>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Plus

                                                                            
Query: 67       tctacgtggattgtgctccaagcaggatgttcgaggctaaatttacatcattatttgtca 126
                ||||| ||||||||||| |||| || ||||| ||||| ||||| ||||||| ||||||||
Sbjct: 34169468 tctacatggattgtgcttcaagaagaatgtttgaggccaaattaacatcataatttgtca 34169527

                                                                            
Query: 127      gtgcaagagcctgaattgcagaagcacgatcaaaacccatggagacaagcgtggcaatcg 186
                ||||||||||| | ||||||||| ||||||||||||||||||| ||||| || || || |
Sbjct: 34169528 gtgcaagagcccgtattgcagaaccacgatcaaaacccatggaaacaagtgtagcgattg 34169587

                                 
Query: 187      acgactccgttggatct 203
                | |||||| ||||||||
Sbjct: 34169588 aagactccattggatct 34169604



 Score =  125 bits (63), Expect = 2e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                            
Query: 356      cctgcggataccaaatatattcagacggtacaaaagcccagcaagtataccagacagtcc 415
                ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 34170843 cctgcggatgccaaatatattcagacgatacaaaagcccagccagtataccagaaagtcc 34170902

                                                       
Query: 416      aggtataacagaacgtcttccagatgagaaaagaagctg 454
                ||||||||  ||||| | ||||||||||||||| |||||
Sbjct: 34170903 aggtataattgaacgccatccagatgagaaaagtagctg 34170941



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 452      ctggagccctgccaaatatatgaatgacttgtcacataattgcactccaaatatgcgaa 510
                |||||| |||||||||||||||||||||||||||| |||  |||  |||||||||||||
Sbjct: 34171029 ctggagtcctgccaaatatatgaatgacttgtcacttaagcgcaacccaaatatgcgaa 34171087



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 285      tgataagagttgttagagaagggccatgacaaccgcgaaaacagtga 331
                ||||||||||||||  ||||||| ||||| |||||||| | ||||||
Sbjct: 34170425 tgataagagttgttcaagaaggggcatgaaaaccgcgagagcagtga 34170471

>dbj|AP003073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0702B09
          Length = 172541

 Score =  129 bits (65), Expect = 1e-26
 Identities = 119/137 (86%)
 Strand = Plus / Plus

                                                                        
Query: 67   tctacgtggattgtgctccaagcaggatgttcgaggctaaatttacatcattatttgtca 126
            ||||| ||||||||||| |||| || ||||| ||||| ||||| ||||||| ||||||||
Sbjct: 5154 tctacatggattgtgcttcaagaagaatgtttgaggccaaattaacatcataatttgtca 5213

                                                                        
Query: 127  gtgcaagagcctgaattgcagaagcacgatcaaaacccatggagacaagcgtggcaatcg 186
            ||||||||||| | ||||||||| ||||||||||||||||||| ||||| || || || |
Sbjct: 5214 gtgcaagagcccgtattgcagaaccacgatcaaaacccatggaaacaagtgtagcgattg 5273

                             
Query: 187  acgactccgttggatct 203
            | |||||| ||||||||
Sbjct: 5274 aagactccattggatct 5290



 Score =  125 bits (63), Expect = 2e-25
 Identities = 90/99 (90%)
 Strand = Plus / Plus

                                                                        
Query: 356  cctgcggataccaaatatattcagacggtacaaaagcccagcaagtataccagacagtcc 415
            ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 6529 cctgcggatgccaaatatattcagacgatacaaaagcccagccagtataccagaaagtcc 6588

                                                   
Query: 416  aggtataacagaacgtcttccagatgagaaaagaagctg 454
            ||||||||  ||||| | ||||||||||||||| |||||
Sbjct: 6589 aggtataattgaacgccatccagatgagaaaagtagctg 6627



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                       
Query: 452  ctggagccctgccaaatatatgaatgacttgtcacataattgcactccaaatatgcgaa 510
            |||||| |||||||||||||||||||||||||||| |||  |||  |||||||||||||
Sbjct: 6715 ctggagtcctgccaaatatatgaatgacttgtcacttaagcgcaacccaaatatgcgaa 6773



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 285  tgataagagttgttagagaagggccatgacaaccgcgaaaacagtga 331
            ||||||||||||||  ||||||| ||||| |||||||| | ||||||
Sbjct: 6111 tgataagagttgttcaagaaggggcatgaaaaccgcgagagcagtga 6157

>emb|BX119916.10| Zebrafish DNA sequence from clone CH211-202I5 in linkage group 11,
              complete sequence
          Length = 196164

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 17     taactaaatgtttcacatttac 38
              ||||||||||||||||||||||
Sbjct: 164500 taactaaatgtttcacatttac 164479

>gb|AC122014.3| Mus musculus chromosome 1 clone RP24-358F15, complete sequence
          Length = 168526

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   atttacatcattatttgtcag 127
             |||||||||||||||||||||
Sbjct: 81429 atttacatcattatttgtcag 81409

>gb|AC006377.3| Homo sapiens BAC clone RP11-450H7 from 7, complete sequence
          Length = 176463

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 23     aatgtttcacatttacaaagtatca 47
              ||||||| |||||||||||||||||
Sbjct: 102038 aatgttttacatttacaaagtatca 102062

>emb|AL121653.2|CNS01DS3 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 164M19 of
              library CITB_978_SKB from chromosome 2 of Homo sapiens
              (Human)
          Length = 138909

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 21     taaatgtttcacatttacaaagtat 45
              ||||||||| |||||||||||||||
Sbjct: 106844 taaatgttttacatttacaaagtat 106820

>ref|XM_518446.1| PREDICTED: Pan troglodytes similar to dynein, axonemal, heavy
            polypeptide 8 (LOC462662), mRNA
          Length = 7984

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 436  cagatgagaaaagaagctgg 455
            ||||||||||||||||||||
Sbjct: 1702 cagatgagaaaagaagctgg 1721

>gb|AC108318.8| Rattus norvegicus 2 BAC CH230-256E18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 210322

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     actaaatgtttcacatttac 38
              ||||||||||||||||||||
Sbjct: 184889 actaaatgtttcacatttac 184908

>ref|XM_597912.2| PREDICTED: Bos taurus hypothetical LOC519687 (LOC519687), mRNA
          Length = 2218

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 441 gagaaaagaagctggagccc 460
           ||||||||||||||||||||
Sbjct: 601 gagaaaagaagctggagccc 620

>gb|AF356519.1| Homo sapiens axonemal dynein heavy chain 8 (DNAH8) mRNA, complete
           cds
          Length = 13860

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 cagatgagaaaagaagctgg 455
           ||||||||||||||||||||
Sbjct: 738 cagatgagaaaagaagctgg 757

>gb|AC116586.6| Mus musculus BAC clone RP23-402K15 from chromosome 7, complete sequence
          Length = 191174

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     tcacatttacaaagtatcag 48
              ||||||||||||||||||||
Sbjct: 143477 tcacatttacaaagtatcag 143496

>gb|AC116709.4| Mus musculus chromosome 1, clone RP23-91L14, complete sequence
          Length = 188848

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tgtttcacatttacaaagta 44
              ||||||||||||||||||||
Sbjct: 117101 tgtttcacatttacaaagta 117120

>emb|AL591719.8| Human DNA sequence from clone RP11-293A10 on chromosome 1 Contains the
             3' end of a novel gene (FLJ10330), a novel gene
             (FLJ35838), the 5' end of the STXBP3 gene for syntaxin
             binding protein 3, a novel gene and a chromosome 20 open
             reading frame 147 (C20orf147) pseudogene, complete
             sequence
          Length = 96417

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 439   atgagaaaagaagctggagccctg 462
             ||||||| ||||||||||||||||
Sbjct: 48348 atgagaatagaagctggagccctg 48325

>gb|AC164076.3| Mus musculus chromosome 1, clone RP24-287C18, complete sequence
          Length = 185185

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 25  tgtttcacatttacaaagta 44
           ||||||||||||||||||||
Sbjct: 965 tgtttcacatttacaaagta 984

>emb|AL035555.11|HS217P22 Human DNA sequence from clone RP1-217P22 on chromosome 6p21.1-21.31
            Contains part of the DNAH8 gene for dynein axonemal heavy
            polypeptide 8 and a novel pseudogene similar to part of
            zuotin related factor-1 (ZRF1), complete sequence
          Length = 130796

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 436  cagatgagaaaagaagctgg 455
            ||||||||||||||||||||
Sbjct: 8756 cagatgagaaaagaagctgg 8775

>gb|AC111678.6| Rattus norvegicus 18 BAC CH230-60A14 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 146568

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     atttacaaagtatcagtcttcagc 56
              ||||| ||||||||||||||||||
Sbjct: 101111 atttagaaagtatcagtcttcagc 101088

>gb|AC114147.5| Rattus norvegicus  BAC CH230-144F3 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 214988

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    atttacaaagtatcagtcttcagc 56
             ||||| ||||||||||||||||||
Sbjct: 58829 atttagaaagtatcagtcttcagc 58806

>ref|NM_001371.1| Homo sapiens dynein, axonemal, heavy polypeptide 8 (DNAH8), mRNA
          Length = 13860

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 cagatgagaaaagaagctgg 455
           ||||||||||||||||||||
Sbjct: 738 cagatgagaaaagaagctgg 757

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 104      taaatttacatcattatttg 123
                ||||||||||||||||||||
Sbjct: 33276092 taaatttacatcattatttg 33276111

>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1311_D08
          Length = 163702

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    taaatttacatcattatttg 123
              ||||||||||||||||||||
Sbjct: 105401 taaatttacatcattatttg 105420

>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1715_H01
          Length = 138733

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   taaatttacatcattatttg 123
             ||||||||||||||||||||
Sbjct: 16842 taaatttacatcattatttg 16861

>emb|AL807391.10| Mouse DNA sequence from clone RP23-432D24 on chromosome X, complete
             sequence
          Length = 111019

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 479   cttgtcacataattgcactccaaa 502
             ||||||||||||||| ||||||||
Sbjct: 30057 cttgtcacataattgaactccaaa 30080

>gb|AC150744.2| Mus musculus BAC clone RP24-98O8 from 7, complete sequence
          Length = 191727

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     tcacatttacaaagtatcag 48
              ||||||||||||||||||||
Sbjct: 114914 tcacatttacaaagtatcag 114895


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,730,518
Number of Sequences: 3902068
Number of extensions: 4730518
Number of successful extensions: 80267
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80180
Number of HSP's gapped (non-prelim): 87
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)