ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A me... 31 1.0
2ATM_NEUCR (Q7RZT9) Serine/threonine-protein kinase tel-1 (EC 2.7... 28 5.0
3FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein ... 28 6.5
4K10_DROME (P13468) DNA-binding protein K10 (Female sterile prote... 28 8.6

>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 11  HPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQRRSIPPS*HGLKLKANTTHA 166
           HP P S P+  P+    H HP P+ +  P  Q  S P   HG +L  +T+++
Sbjct: 213 HPHPHSHPHSHPHP---HPHPHPHQIPHPHPQPHSQP---HGHRLLRSTSNS 258



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>ATM_NEUCR (Q7RZT9) Serine/threonine-protein kinase tel-1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase tel-1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2953

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 3    LNNIQDLTLDQTEARIPKLNTSIRHLTGFTDRTFKDDQSLHLDTDLNLK 149
            ++N+ +  LDQT+    KL+ +++     T    +D+Q L ++T L L+
Sbjct: 1798 VHNVLEYELDQTQGMKQKLSEALKEWLTSTSPAARDNQKLLINTILYLR 1846



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>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor (ECM3|
            homolog) (NV domain-containing protein 1)
          Length = 3160

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +3

Query: 27   LDQTEARIPKLNTSIRHLTGFTDRTFK------DDQSLHLDTDLNLKQTRHTPTI*WRSG 188
            L +TE  +  ++T + H++    +  K        + LH+    +L+  +H     W SG
Sbjct: 836  LRETELHVSDVDTDVTHISFTLTQAPKHGHMQISGRPLHVGGQFHLEDIKHGRISYWNSG 895

Query: 189  DES 197
            DES
Sbjct: 896  DES 898



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>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)|
          Length = 463

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 5   KQHPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQRRSIPPS 127
           +QHP P+     SP  Q   +HPSPN    P   ++  P S
Sbjct: 128 QQHPSPNQQQPPSPNQQ---QHPSPNQQQHPSPNQQQHPNS 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,778,030
Number of Sequences: 219361
Number of extensions: 575464
Number of successful extensions: 1156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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