ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46h11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene Length = 1154 Score = 389 bits (196), Expect = e-105 Identities = 205/208 (98%) Strand = Plus / Minus Query: 1 acttaaacaacatccaggacctgactctggaccaaactgaagcccgtatacccaaactga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1076 acttaaacaacatccaggacctgactctggaccaaactgaagcccgtatacccaaactga 1017 Query: 61 acacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatccc 120 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1016 acacaagcatccgtcacctaacggacttcacagaccggaccttcaaagacgatcaatccc 957 Query: 121 tccatcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatgga 180 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 956 tccatcttgacacggacttagacgtaaagcaaacacgacacacgccaacaatttaatgga 897 Query: 181 ggtccggtgatgagtctcggggcacggc 208 |||||||||||||||||||||||||||| Sbjct: 896 ggtccggtgatgagtctcggggcacggc 869
>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds Length = 2254 Score = 194 bits (98), Expect = 7e-47 Identities = 98/98 (100%) Strand = Plus / Minus Query: 111 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 2187 Query: 171 atttaatggaggtccggtgatgagtctcggggcacggc 208 |||||||||||||||||||||||||||||||||||||| Sbjct: 2186 atttaatggaggtccggtgatgagtctcggggcacggc 2149
>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA, complete cds Length = 1242 Score = 143 bits (72), Expect = 2e-31 Identities = 135/152 (88%), Gaps = 3/152 (1%) Strand = Plus / Minus Query: 52 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 110 |||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978 Query: 111 gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 169 |||||| |||| ||| |||||||| |||| ||| |||||||||||| |||||||||||| Sbjct: 977 gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 919 Query: 170 aatttaatggaggtccggtgatgagtctcggg 201 |||| ||| |||||||||| | |||||||||| Sbjct: 918 aattcaatcgaggtccggtcacgagtctcggg 887 Score = 63.9 bits (32), Expect = 2e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 6 aacaacatccaggacctgactctggaccaaactgaa 41 |||||||||||||||||||||||| ||||||||||| Sbjct: 1063 aacaacatccaggacctgactctgaaccaaactgaa 1028
>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene) Length = 1127 Score = 135 bits (68), Expect = 6e-29 Identities = 134/152 (88%), Gaps = 3/152 (1%) Strand = Plus / Minus Query: 52 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 110 |||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976 Query: 111 gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 169 |||||| |||| ||| |||||||| |||| ||| |||||||||||| |||||||||||| Sbjct: 975 gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaac 917 Query: 170 aatttaatggaggtccggtgatgagtctcggg 201 |||| ||| | |||||||| | |||||||||| Sbjct: 916 aattcaatcggggtccggtcacgagtctcggg 885 Score = 63.9 bits (32), Expect = 2e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 6 aacaacatccaggacctgactctggaccaaactgaa 41 |||||||||||||||||||||||| ||||||||||| Sbjct: 1061 aacaacatccaggacctgactctgaaccaaactgaa 1026
>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence Length = 1130 Score = 135 bits (68), Expect = 6e-29 Identities = 134/152 (88%), Gaps = 3/152 (1%) Strand = Plus / Minus Query: 52 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 110 |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttcaa-gac 951 Query: 111 gatcaatccctcc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaac 169 |||||| |||||| | |||||||| ||||| || |||||||||||| |||||||||||| Sbjct: 950 gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 891 Query: 170 aatttaatggaggtccggtgatgagtctcggg 201 |||| ||| ||| |||||| | |||||||||| Sbjct: 890 aattcaatcgagctccggtcacgagtctcggg 859 Score = 63.9 bits (32), Expect = 2e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 6 aacaacatccaggacctgactctggaccaaactgaa 41 |||||||||||||||||||||||| ||||||||||| Sbjct: 1035 aacaacatccaggacctgactctgaaccaaactgaa 1000
>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete cds Length = 1136 Score = 135 bits (68), Expect = 6e-29 Identities = 133/152 (87%), Gaps = 2/152 (1%) Strand = Plus / Minus Query: 52 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 110 |||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979 Query: 111 gatcaatccct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaac 169 |||||| |||| ||| |||||||| ||||| || |||||||||||| |||||||||||| Sbjct: 978 gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaac 919 Query: 170 aatttaatggaggtccggtgatgagtctcggg 201 |||| ||| |||||||||| | | |||||||| Sbjct: 918 aattcaatcgaggtccggtcacgggtctcggg 887 Score = 61.9 bits (31), Expect = 7e-07 Identities = 34/35 (97%) Strand = Plus / Minus Query: 7 acaacatccaggacctgactctggaccaaactgaa 41 ||||||||||||||||||||||| ||||||||||| Sbjct: 1063 acaacatccaggacctgactctgaaccaaactgaa 1029
>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA, complete cds Length = 1181 Score = 133 bits (67), Expect = 2e-28 Identities = 125/143 (87%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 60 aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 119 |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||| || Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979 Query: 120 ct-ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatg 178 || ||| |||||||| ||||| || |||||||||||| |||||||||||||||| ||| Sbjct: 978 ctcccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatc 919 Query: 179 gaggtccggtgatgagtctcggg 201 |||||||||| | | |||||||| Sbjct: 918 gaggtccggtcacgggtctcggg 896
>gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, complete cds Length = 808 Score = 65.9 bits (33), Expect = 5e-08 Identities = 33/33 (100%) Strand = Plus / Minus Query: 176 atggaggtccggtgatgagtctcggggcacggc 208 ||||||||||||||||||||||||||||||||| Sbjct: 808 atggaggtccggtgatgagtctcggggcacggc 776
>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete sequence Length = 205838 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Plus Query: 21 ctgactctggaccaaactgaagcc 44 |||||||||||||||||||||||| Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence Length = 156547 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 acccaaactgaacacaagcat 70 ||||||||||||||||||||| Sbjct: 134241 acccaaactgaacacaagcat 134261
>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete sequences Length = 181678 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 15 caggacctgactctggaccaaactgaag 42 |||||| ||||||||||||| ||||||| Sbjct: 3276 caggacttgactctggaccagactgaag 3249
>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete sequences Length = 155513 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 15 caggacctgactctggaccaaactgaag 42 |||||| ||||||||||||| ||||||| Sbjct: 131204 caggacttgactctggaccagactgaag 131177
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105 Length = 340000 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 15 caggacctgactctggaccaaactgaag 42 |||||| ||||||||||||| ||||||| Sbjct: 80688 caggacttgactctggaccagactgaag 80661
>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete sequence Length = 136804 Score = 40.1 bits (20), Expect = 2.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 15 caggacctgactctggaccaaactgaag 42 |||||| ||||||||||||| ||||||| Sbjct: 102805 caggacttgactctggaccagactgaag 102778 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,405,531 Number of Sequences: 3902068 Number of extensions: 1405531 Number of successful extensions: 105955 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105916 Number of HSP's gapped (non-prelim): 33 length of query: 208 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 186 effective length of database: 17,147,199,772 effective search space: 3189379157592 effective search space used: 3189379157592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
