ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46h08 |
|---|---|
| Clone Library Name | barley_pub |
>PAP2_ORYSA (Q6K439) Probable plastid-lipid-associated protein 2, chloroplast| precursor (Fibrillin-like protein 2) Length = 319 Score = 106 bits (264), Expect = 3e-23 Identities = 53/61 (86%), Positives = 58/61 (95%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 SIENAASSVA+TISGQPPLKIP R+++A SWLLTTYLD ELRISRGDGSSIFVLFKEGS+ Sbjct: 257 SIENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGST 316 Query: 293 L 291 L Sbjct: 317 L 317
>PAP1_BRACM (Q94FZ9) Plastid lipid-associated protein 1, chloroplast precursor| Length = 327 Score = 87.4 bits (215), Expect = 2e-17 Identities = 42/61 (68%), Positives = 50/61 (81%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 S+++ ASSVA+TIS QPPLK +SA SWLLTTYLD +LRISRGDG S+FVL +EGSS Sbjct: 264 SVQDTASSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDLRISRGDGGSVFVLIREGSS 323 Query: 293 L 291 L Sbjct: 324 L 324
>PAP1_ARATH (O81439) Probable plastid-lipid associated protein 1, chloroplast| precursor (AtPap1) (Fibrillin 1) Length = 318 Score = 86.3 bits (212), Expect = 4e-17 Identities = 41/61 (67%), Positives = 50/61 (81%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 S+++ ASSVA+TIS QPPLK S++ SWLLTTYLD +LRISRGDG S++VL KEGSS Sbjct: 255 SVQDTASSVARTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVLIKEGSS 314 Query: 293 L 291 L Sbjct: 315 L 315
>LIPC_SOLTU (P80471) Light-induced protein, chloroplast precursor| (Chloroplastic drought-induced stress protein CDSP-34) Length = 326 Score = 85.9 bits (211), Expect = 5e-17 Identities = 41/61 (67%), Positives = 49/61 (80%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 S+++ ASSVAK+IS QPP+K P + +A SWLLTTYLD ELRISRGD S+FVL KEGS Sbjct: 263 SVQDTASSVAKSISSQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSP 322 Query: 293 L 291 L Sbjct: 323 L 323
>PAP2_ARATH (O49629) Probable plastid-lipid associated protein 2, chloroplast| precursor (AtPap2) (Fibrillin 2) Length = 310 Score = 85.1 bits (209), Expect = 8e-17 Identities = 40/61 (65%), Positives = 50/61 (81%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 S+++ ASSVA+TIS QPPLK +++A SWLLTTYLD ++RISRGDG S+FVL KEGS Sbjct: 247 SVQDTASSVARTISSQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSP 306 Query: 293 L 291 L Sbjct: 307 L 307
>PAP2_BRACM (Q94KU6) Plastid lipid-associated protein 2, chloroplast precursor| Length = 319 Score = 84.7 bits (208), Expect = 1e-16 Identities = 40/61 (65%), Positives = 49/61 (80%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 S+++ A+SVA+TIS QPPLK +SA SWLLTTYLD ++RISRGDG S+FVL KEGS Sbjct: 256 SVQDTATSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSP 315 Query: 293 L 291 L Sbjct: 316 L 316
>LIPC_SOLDE (O99019) Light-induced protein, chloroplast precursor (C40.4)| Length = 326 Score = 82.4 bits (202), Expect = 5e-16 Identities = 39/61 (63%), Positives = 47/61 (77%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 S+++ ASSV K+IS QPP+K P + +A SWLLTTYLD ELRI RGD S+FVL KEGS Sbjct: 263 SVQDTASSVVKSISSQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGSP 322 Query: 293 L 291 L Sbjct: 323 L 323
>CHRC_CUCSA (Q96398) Chromoplast-specific carotenoid-associated protein,| chloroplast precursor Length = 322 Score = 82.0 bits (201), Expect = 7e-16 Identities = 39/60 (65%), Positives = 47/60 (78%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 S+++ AS+VAKTIS QPP+K + SWLLTTYLD +LRISRGDG S+FVL KEGSS Sbjct: 259 SLQDTASNVAKTISSQPPIKFSISNTRVESWLLTTYLDEDLRISRGDGGSVFVLLKEGSS 318
>PAP_CITUN (Q9ZWQ8) Plastid-lipid associated protein, chloroplast precursor| (CitPAP) Length = 323 Score = 80.5 bits (197), Expect = 2e-15 Identities = 39/61 (63%), Positives = 46/61 (75%) Frame = -1 Query: 473 SIENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 S+++ ASSVAKTIS QPPLK + +A SWLLTTYLD +LRISR D S+FV KEGS Sbjct: 260 SVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSP 319 Query: 293 L 291 L Sbjct: 320 L 320
>PAP3_BRACM (Q94KU5) Plastid lipid-associated protein 3, chloroplast precursor| Length = 360 Score = 77.4 bits (189), Expect = 2e-14 Identities = 36/60 (60%), Positives = 48/60 (80%) Frame = -1 Query: 470 IENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 291 +++ A+++++ ISGQPPLK+PF SWLLTTYLD +LRISRGDG +FVL +EGSSL Sbjct: 299 LQDVAANISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDG-GLFVLAREGSSL 357
>PAP3_ARATH (O82291) Probable plastid-lipid associated protein 3, chloroplast| precursor (AtPap3) (Fibrillin 3) Length = 376 Score = 76.6 bits (187), Expect = 3e-14 Identities = 35/60 (58%), Positives = 48/60 (80%) Frame = -1 Query: 470 IENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 291 +++ A+++++ +SGQPPLK+PF SWLLTTYLD +LRISRGDG +FVL +EGSSL Sbjct: 315 LQDVAANISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDG-GLFVLAREGSSL 373
>PG1_PEA (Q9ZP40) Plastoglobulin 1, chloroplast precursor| Length = 358 Score = 75.5 bits (184), Expect = 7e-14 Identities = 36/60 (60%), Positives = 46/60 (76%) Frame = -1 Query: 470 IENAASSVAKTISGQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 291 +EN +++++ ISGQ PLKIP E SWL+TTYLD +LRISRGDG +FVL +EGSSL Sbjct: 297 LENVVANISRVISGQSPLKIPIPGERTSSWLITTYLDKDLRISRGDG-GLFVLAREGSSL 355
>PAP3_ORYSA (Q7XBW5) Probable plastid-lipid associated protein 3, chloroplast| precursor Length = 374 Score = 71.2 bits (173), Expect = 1e-12 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%) Frame = -1 Query: 470 IENAASSVAKTISGQPPLKIPFRSES-AGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 294 ++ A +S+A +ISGQPPLK+P + A SWLLTTYLD +LRISRGDG +F+L KEGS Sbjct: 311 LQQAFASIAGSISGQPPLKLPIPGNNRARSWLLTTYLDKDLRISRGDG-GLFILVKEGSP 369 Query: 293 L 291 L Sbjct: 370 L 370
>HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT domain-containing| protein 1) (E3 ligase for inhibin receptor) (EULIR) Length = 2612 Score = 30.0 bits (66), Expect = 3.2 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -1 Query: 470 IENAASSVAKTISGQPPLKIPFRSE-SAGSWLLTTYLDAELRISRGDGSSIFVL 312 ++ A V + S QP L P ++ + G+W LT + E+ I DG +L Sbjct: 728 LQRARGQVKPSTSSQPILSAPGPTKLTVGNWSLTCLKEGEIAIHNSDGQQATIL 781
>CCS_CAPAN (Q42435) Capsanthin/capsorubin synthase, chloroplast precursor (EC| 5.3.99.8) Length = 498 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 333 ISSRDSKLGIKVGCEQPGPSTLAPERYLQWGLTGDGLGDRGC 458 ++ + SK GIKV C P P ++ P Y W + LG C Sbjct: 96 LAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDC 137
>NPT2A_RABIT (Q28620) Sodium-dependent phosphate transport protein 2A| (Sodium/phosphate cotransporter 2A) (Na(+)/Pi cotransporter 2A) (Sodium-phosphate transport protein 2A) (Na(+)-dependent phosphate cotransporter 2A) (NaPi-2a) (Solute carrier family 34 Length = 642 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -2 Query: 370 PTLMPSLESLEEMAA-ASLCCSRKEARSQYRP 278 P M SL+ L+ + A+LCCSR E RS P Sbjct: 583 PHWMHSLQPLDHLITHATLCCSRSEPRSPQLP 614 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,991,550 Number of Sequences: 219361 Number of extensions: 1146432 Number of successful extensions: 2526 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2499 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2525 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
