ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46h06 |
|---|---|
| Clone Library Name | barley_pub |
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 33.5 bits (75), Expect = 0.37 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = +1 Query: 82 PVTTKPIRKTTSKGVHPSCLGQPACTTPEKQA 177 P T K TT KG P+ L +PA TTP+K A Sbjct: 698 PTTPKETAPTTPKGTAPTTLKEPAPTTPKKPA 729 Score = 32.7 bits (73), Expect = 0.63 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = +1 Query: 82 PVTTKPIRKTTSKGVHPSCLGQPACTTPEKQA 177 P T K TT KG P+ L +PA TTP+K A Sbjct: 767 PTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPA 798 Score = 30.0 bits (66), Expect = 4.1 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = +1 Query: 82 PVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTTALLNQGLQKSPSMPKK 237 P T K TT+K P+ +PA TTP+K A PTT + +P+ PK+ Sbjct: 546 PTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPA-PTTP-----KEPAPTTPKE 591 Score = 29.6 bits (65), Expect = 5.3 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = +1 Query: 82 PVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTTALLNQGLQKSPSMPKK 237 P T K TT K P+ +PA TTP++ A PTT + +P+ PKK Sbjct: 578 PTTPKEPAPTTPKEPAPTTTKKPAPTTPKEPA-PTTP-----KETAPTTPKK 623 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +1 Query: 76 LDPVTTKPIRKTTSKGVHPSCLGQPACTTPEKQA--HPTTALLNQGLQKSPSMPKK 237 L P T + TT + + P+ +P TTPE+ A P A N + +P+ PK+ Sbjct: 632 LAPTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKE 687 Score = 28.9 bits (63), Expect = 9.1 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +1 Query: 82 PVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTT 189 P T K + TT + + P+ +PA TTPE+ A PTT Sbjct: 618 PTTPKKLTPTTPEKLAPTTPEKPAPTTPEELA-PTT 652
>HCPD_HELPY (O24968) Putative beta-lactamase hcpD precursor (EC 3.5.2.6)| (Cysteine-rich protein D) (PBP 4) (Penicillin-binding protein 4) Length = 306 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = -3 Query: 249 MASSFFRHRRGLLQALIQKCSSRVCLFFRGSA--SWLAQAAWMNPFACSFSYGFCCN 85 + + + +RRG C S ++F G+ A+A +++ +ACS +YG CN Sbjct: 116 LPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCN 172
>MURD_LEPIN (Q8F7V4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 463 Score = 30.8 bits (68), Expect = 2.4 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 403 FLPFT----NIALFILFFFSTRGRIEFFQTQTPTFAVLSNPTMLFPKRLQISVDKNGVFF 236 +LP T N+A IL G+ E QT+ P F L P R QI+ +K G+ F Sbjct: 261 YLPGTHNRENLAASILAAEEIGGKPESIQTRIPLFRGL-------PHRFQIAGEKLGISF 313 Query: 235 FSASKGT 215 + SK T Sbjct: 314 INDSKST 320
>MURD_LEPIC (Q72NP4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 463 Score = 30.8 bits (68), Expect = 2.4 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = -2 Query: 403 FLPFT----NIALFILFFFSTRGRIEFFQTQTPTFAVLSNPTMLFPKRLQISVDKNGVFF 236 +LP T N+A IL G+ E QT+ P F L P R QI+ +K G+ F Sbjct: 261 YLPGTHNRENLAASILAAEEIGGKPESIQTRIPLFRGL-------PHRFQIAGEKLGISF 313 Query: 235 FSASKGT 215 + SK T Sbjct: 314 INDSKST 320
>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1054 Score = 30.4 bits (67), Expect = 3.1 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = +1 Query: 79 DPVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTTALLNQGLQKSPSMPKK 237 +P T K TT K P+ L +P TTP K+ PTT + P+ PK+ Sbjct: 454 EPTTPKEPEPTTPKEPEPTTLKEPEPTTP-KEPEPTTP-----KEPEPTTPKE 500 Score = 30.4 bits (67), Expect = 3.1 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = +1 Query: 79 DPVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTTALLNQGLQKSPSMPKK 237 +P TTK TT K P+ +P TTP K+ PTT + P+ PK+ Sbjct: 438 EPTTTKEPESTTRKEPEPTTPKEPEPTTP-KEPEPTTL-----KEPEPTTPKE 484 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = +1 Query: 79 DPVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTTALLNQGLQKSPSMPKK 237 +P T K TT K P+ +P TTP K+ PTT + P+ PKK Sbjct: 566 EPTTPKEPEPTTPKEPEPTTRKEPEPTTP-KEPEPTTP-----KEPEPTTPKK 612 Score = 29.3 bits (64), Expect = 7.0 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +1 Query: 79 DPVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTTALLNQGLQKSPSMPK 234 +P T K TT K P+ +P TTP+K TT+ L+ + PK Sbjct: 582 EPTTRKEPEPTTPKEPEPTTPKEPEPTTPKKPEPTTTSPKTTTLKATTLAPK 633 Score = 29.3 bits (64), Expect = 7.0 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = +1 Query: 79 DPVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTTALLNQGLQKSPSMPKK 237 +P T K TT K P+ +P TTP K+ PTT + P+ PKK Sbjct: 502 EPTTPKEPEPTTPKEPEPTTPKEPEPTTP-KEPEPTTP-----KEPEPTTPKK 548
>SYQ_PSEAE (Q9I2U8) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 556 Score = 30.0 bits (66), Expect = 4.1 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -1 Query: 467 DPSFSRASYQGEFEFYKNPFFISSLYKYRPFHPVF 363 +PS +A+ + F+F + +F++ L RP PVF Sbjct: 509 EPSLGQANPEDRFQFEREGYFVADLKDSRPGKPVF 543
>NAC9_ARATH (Q9ZVH0) Putative NAC domain-containing protein 9 (ANAC009)| Length = 418 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 10/79 (12%) Frame = +3 Query: 303 RTAKVGVWV*KNSIRPLVEKKNRM-----KRAIFVKGRNEK-----WVFVKFKLPLVTSP 452 R G W + RP+ + K +F KGR K W+ +F+LP ++ P Sbjct: 90 RVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLSEP 149 Query: 453 RKRRVSFFFSLYSLP*TWS 509 FF S S +W+ Sbjct: 150 SPPSKRFFDSPVSPNDSWA 168
>CYSH_PSEAE (O05927) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8)| (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) Length = 267 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +2 Query: 260 RYLKPFGKQHG--GI*EDGKGRCLGLKKLDPASRR 358 R L+P K+ G DG G C G++K++P R+ Sbjct: 117 RLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRK 151
>OR83C_DROME (Q9VNK9) Putative odorant receptor 83c| Length = 397 Score = 29.3 bits (64), Expect = 7.0 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +1 Query: 259 QIFEAFWETAWWDLRGRQR*VFGF 330 Q++E+ W++L G QR +FGF Sbjct: 332 QVYESICNVTWYELSGEQRKLFGF 355
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 82 PVTTKPIRKTTSKGVHPSCLGQPACTTPEKQAHPTTALLNQGLQKS 219 P ++ P + T +HPS + QPA TTP AH A + G+ S Sbjct: 1187 PQSSFPAAQQTVFTIHPSHV-QPAYTTPPHMAHVPQAHVQSGMVPS 1231
>YAIH_LACLA (Q9CJB2) Hypothetical UPF0177 protein yaiH| Length = 236 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 8/43 (18%) Frame = -2 Query: 460 LFLGLVTKGSLNFTKTHFS--------FLPFTNIALFILFFFS 356 LFLG++ L + K S FL FT I LFI++FF+ Sbjct: 65 LFLGILICYKLGYYKNTLSIFKIKNILFLLFTTIVLFIIYFFT 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,589,912 Number of Sequences: 219361 Number of extensions: 1811584 Number of successful extensions: 4814 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4583 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4793 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
