ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genom... 60 8e-06
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 8e-06
3gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genom... 60 8e-06
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
5dbj|AK120539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
6emb|AJ889574.1| Oreochromis mossambicus partial vtg gene for vit... 52 0.002
7gb|AF072686.1|AF072686 Oreochromis aureus vitellogenin gene, com... 52 0.002
8dbj|AK125408.1| Homo sapiens cDNA FLJ43419 fis, clone OCBBF2026368 44 0.46
9dbj|AK125386.1| Homo sapiens cDNA FLJ43396 fis, clone OCBBF2009095 44 0.46
10gb|AC104687.3| Homo sapiens BAC clone RP11-123J14 from 4, comple... 44 0.46
11gb|AC182673.2| Populus trichocarpa clone Pop1-26A1, complete seq... 42 1.8
12gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 42 1.8
13emb|Z70211.1|CEK11E4 Caenorhabditis elegans Cosmid K11E4, comple... 42 1.8
14gb|AC116598.3| Mus musculus BAC clone RP24-419D22 from chromosom... 42 1.8
15gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, co... 42 1.8
16gb|AC105174.7| Mus musculus chromosome 5, clone RP24-230L5, comp... 42 1.8
17gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete se... 42 1.8
18gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosom... 42 1.8
19emb|AL133454.6|CNS01DV5 Human chromosome 14 DNA sequence BAC R-5... 42 1.8
20gb|AY572268.1| Aristolochia grandiflora ribulose-1,5-bisphosphat... 40 7.1
21gb|AY572260.1| Aristolochia gigantea ribulose-1,5-bisphosphate c... 40 7.1
22gb|AC133495.4| Mus musculus BAC clone RP24-331G15 from chromosom... 40 7.1
23gb|AY616754.1| Homo sapiens biliverdin reductase A (BLVRA) gene,... 40 7.1
24gb|AC115359.5| Mus musculus BAC clone RP23-190K20 from chromosom... 40 7.1
25gb|DQ352370.1| Loropetalum chinense voucher Ickert-Bond 1325 rib... 40 7.1
26gb|AC183987.3| Pan troglodytes BAC clone CH251-265I5 from chromo... 40 7.1
27gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome... 40 7.1
28gb|AC124425.3| Mus musculus BAC clone RP24-230N16 from chromosom... 40 7.1
29gb|AC125359.4| Mus musculus BAC clone RP23-102I17 from chromosom... 40 7.1
30gb|AC119034.2| Homo sapiens 3 BAC RP11-303O22 (Roswell Park Canc... 40 7.1
31ref|XM_765451.1| Giardia lamblia ATCC 50803 DNA-binding protein ... 40 7.1
32emb|AL512427.10| Human DNA sequence from clone RP11-325M4 on chr... 40 7.1
33emb|AL390237.9| Human DNA sequence from clone RP11-278J20 on chr... 40 7.1
34emb|AJ417690.1|AAC417690 Actinobacillus actinomycetemcomitans mu... 40 7.1
35emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in... 40 7.1
36gb|AF061999.1| Loropetalum chinense ribulose 1,5-bisphosphate ca... 40 7.1
37emb|BX537351.16| Zebrafish DNA sequence from clone DKEYP-84B10 i... 40 7.1
38emb|BX293556.14| Zebrafish DNA sequence from clone DKEY-21N20 in... 40 7.1
39dbj|AB237042.1| Loropetalum chinense chloroplast rbcL gene for r... 40 7.1
40gb|AC005189.2| Homo sapiens PAC clone RP5-905J8 from 7p11.2-p21,... 40 7.1
41gb|AY034012.1| Veronicastrum sibiricum ribulose-1,5-bisphosphate... 40 7.1
42gb|AC099541.2| Homo sapiens chromosome 3 clone RP11-520A21, comp... 40 7.1
43gb|AC093878.3| Homo sapiens BAC clone RP11-638O6 from 4, complet... 40 7.1
44gb|AC104189.2| Homo sapiens chromosome 3 clone RP11-465K13, comp... 40 7.1
45gb|AC008043.5| Drosophila melanogaster, chromosome 3R, region 94... 40 7.1
46dbj|AB205600.1| Aristolochia reniformis chloroplast rbcL gene fo... 40 7.1
47dbj|AB205591.1| Aristolochia gigantea chloroplast rbcL gene for ... 40 7.1
48dbj|AB205590.1| Aristolochia eriantha chloroplast rbcL gene for ... 40 7.1
49dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
50gb|AC008144.5|AC008144 Drosophila melanogaster, chromosome 3R, r... 40 7.1
51gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome... 40 7.1
52gb|AC093590.2| Homo sapiens BAC clone RP11-47G14 from 2, complet... 40 7.1
53gb|AC026161.4|AC026161 Homo sapiens chromosome 3 clone RP11-105K... 40 7.1
54emb|AL928915.24| Mouse DNA sequence from clone RP23-276J8 on chr... 40 7.1
55dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
56gb|AY961989.1| Homo sapiens RAD18 homolog (S. cerevisiae) (RAD18... 40 7.1
57gb|AE003737.3| Drosophila melanogaster chromosome 3R, section 75... 40 7.1
58gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 7.1
59emb|AJ247614.1|DSE247614 Drymonia serrulata partial chloroplast ... 40 7.1
60gb|AC034186.5| Homo sapiens chromosome 3 clone RP11-19E8 map 3p,... 40 7.1 
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete
             sequence
          Length = 129440

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 74    atcttgatcctgttacaacaaaacccataagaaaaactacaagcaaaggg 123
             ||||||||||||||||||||||||||| ||   | |||||||||||||||
Sbjct: 57248 atcttgatcctgttacaacaaaacccacaaaggagactacaagcaaaggg 57199



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 192   acttctgaatcaag-gcttgcaaaagtcc 219
             |||||||||||||| ||||||||||||||
Sbjct: 57133 acttctgaatcaagagcttgcaaaagtcc 57105



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 309   gcaaaggtaggtgtttgggtttgaaaaaactcgatcc 345
             |||||||| ||| ||||||||||||||| ||| ||||
Sbjct: 57007 gcaaaggttggtatttgggtttgaaaaacctcaatcc 56971



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 427   tcaaactccccttggtaactag-ccctagaaaaagacgggtctc 469
             |||||||||||||| |||  || |||||||||||||| ||||||
Sbjct: 56892 tcaaactccccttgataaacaggccctagaaaaagacaggtctc 56849



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 484   tctactctctcccatgaacatggagtga 511
             ||||| |||||||| |||||||||||||
Sbjct: 56837 tctaccctctcccaagaacatggagtga 56810
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 74       atcttgatcctgttacaacaaaacccataagaaaaactacaagcaaaggg 123
                ||||||||||||||||||||||||||| ||   | |||||||||||||||
Sbjct: 29225433 atcttgatcctgttacaacaaaacccacaaaggagactacaagcaaaggg 29225384



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                             
Query: 192      acttctgaatcaag-gcttgcaaaagtcc 219
                |||||||||||||| ||||||||||||||
Sbjct: 29225318 acttctgaatcaagagcttgcaaaagtcc 29225290



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 309      gcaaaggtaggtgtttgggtttgaaaaaactcgatcc 345
                |||||||| ||| ||||||||||||||| ||| ||||
Sbjct: 29225192 gcaaaggttggtatttgggtttgaaaaacctcaatcc 29225156



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                            
Query: 427      tcaaactccccttggtaactag-ccctagaaaaagacgggtctc 469
                |||||||||||||| |||  || |||||||||||||| ||||||
Sbjct: 29225077 tcaaactccccttgataaacaggccctagaaaaagacaggtctc 29225034



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 484      tctactctctcccatgaacatggagtga 511
                ||||| |||||||| |||||||||||||
Sbjct: 29225022 tctaccctctcccaagaacatggagtga 29224995
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>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete
              sequence
          Length = 139788

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                
Query: 74     atcttgatcctgttacaacaaaacccataagaaaaactacaagcaaaggg 123
              ||||||||||||||||||||||||||| ||   | |||||||||||||||
Sbjct: 130567 atcttgatcctgttacaacaaaacccacaaaggagactacaagcaaaggg 130616



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 309    gcaaaggtaggtgtttgggtttgaaaaaactcgatcc 345
              |||||||| ||| ||||||||||||||| ||| ||||
Sbjct: 130808 gcaaaggttggtatttgggtttgaaaaacctcaatcc 130844



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                           
Query: 192    acttctgaatcaag-gcttgcaaaagtcc 219
              |||||||||||||| ||||||||||||||
Sbjct: 130682 acttctgaatcaagagcttgcaaaagtcc 130710



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 484    tctactctctcccatgaacatggagtga 511
              ||||| |||||||| |||||||||||||
Sbjct: 130978 tctaccctctcccaagaacatggagtga 131005



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                          
Query: 427    tcaaactccccttggtaactag-ccctagaaaaagacgggtctc 469
              |||||||||||||| |||  || |||||||||||||| ||||||
Sbjct: 130923 tcaaactccccttgataaacaggccctagaaaaagacaggtctc 130966
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 74       atcttgatcctgttacaacaaaacccataagaaaaactacaagcaaaggg 123
                ||||||||||||||||||||||||||| ||   | |||||||||||||||
Sbjct: 29316809 atcttgatcctgttacaacaaaacccacaaaggagactacaagcaaaggg 29316760



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                             
Query: 192      acttctgaatcaag-gcttgcaaaagtcc 219
                |||||||||||||| ||||||||||||||
Sbjct: 29316694 acttctgaatcaagagcttgcaaaagtcc 29316666



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 309      gcaaaggtaggtgtttgggtttgaaaaaactcgatcc 345
                |||||||| ||| ||||||||||||||| ||| ||||
Sbjct: 29316568 gcaaaggttggtatttgggtttgaaaaacctcaatcc 29316532



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                            
Query: 427      tcaaactccccttggtaactag-ccctagaaaaagacgggtctc 469
                |||||||||||||| |||  || |||||||||||||| ||||||
Sbjct: 29316453 tcaaactccccttgataaacaggccctagaaaaagacaggtctc 29316410



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 484      tctactctctcccatgaacatggagtga 511
                ||||| |||||||| |||||||||||||
Sbjct: 29316398 tctaccctctcccaagaacatggagtga 29316371
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>dbj|AK120539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F07, full
            insert sequence
          Length = 1970

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 74   atcttgatcctgttacaacaaaacccataagaaaaactacaagcaaaggg 123
            ||||||||||||||||||||||||||| ||   | |||||||||||||||
Sbjct: 1914 atcttgatcctgttacaacaaaacccacaaaggagactacaagcaaaggg 1865



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                         
Query: 192  acttctgaatcaag-gcttgcaaaagtcc 219
            |||||||||||||| ||||||||||||||
Sbjct: 1799 acttctgaatcaagagcttgcaaaagtcc 1771



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 309  gcaaaggtaggtgtttgggtttgaaaaaactcgatcc 345
            |||||||| ||| ||||||||||||||| ||| ||||
Sbjct: 1673 gcaaaggttggtatttgggtttgaaaaacctcaatcc 1637



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                        
Query: 427  tcaaactccccttggtaactag-ccctagaaaaagacgggtctc 469
            |||||||||||||| |||  || |||||||||||||| ||||||
Sbjct: 1558 tcaaactccccttgataaacaggccctagaaaaagacaggtctc 1515



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 484  tctactctctcccatgaacatggagtga 511
            ||||| |||||||| |||||||||||||
Sbjct: 1503 tctaccctctcccaagaacatggagtga 1476
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>emb|AJ889574.1| Oreochromis mossambicus partial vtg gene for vitellogenin, promoter
           and exon 1
          Length = 3061

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 19  tattcatttattctttatacttgtat 44
           ||||||||||||||||||||||||||
Sbjct: 125 tattcatttattctttatacttgtat 150
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>gb|AF072686.1|AF072686 Oreochromis aureus vitellogenin gene, complete cds
          Length = 11453

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 19  tattcatttattctttatacttgtat 44
           ||||||||||||||||||||||||||
Sbjct: 78  tattcatttattctttatacttgtat 103
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>dbj|AK125408.1| Homo sapiens cDNA FLJ43419 fis, clone OCBBF2026368
          Length = 3036

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 388 ttgtaaagggaagaaatgaaaaatgg 413
           ||||||| ||||||||||||||||||
Sbjct: 724 ttgtaaaaggaagaaatgaaaaatgg 749
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>dbj|AK125386.1| Homo sapiens cDNA FLJ43396 fis, clone OCBBF2009095
          Length = 2550

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 388  ttgtaaagggaagaaatgaaaaatgg 413
            ||||||| ||||||||||||||||||
Sbjct: 2132 ttgtaaaaggaagaaatgaaaaatgg 2157
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>gb|AC104687.3| Homo sapiens BAC clone RP11-123J14 from 4, complete sequence
          Length = 176662

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 388   ttgtaaagggaagaaatgaaaaatgg 413
             ||||||| ||||||||||||||||||
Sbjct: 94345 ttgtaaaaggaagaaatgaaaaatgg 94320
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>gb|AC182673.2| Populus trichocarpa clone Pop1-26A1, complete sequence
          Length = 80768

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   taagaaaaactacaagcaaag 121
             |||||||||||||||||||||
Sbjct: 73886 taagaaaaactacaagcaaag 73866
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 368    caggatgaaaagggcgatatt 388
              |||||||||||||||||||||
Sbjct: 284939 caggatgaaaagggcgatatt 284919
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>emb|Z70211.1|CEK11E4 Caenorhabditis elegans Cosmid K11E4, complete sequence
          Length = 33995

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 405   gaaaaatgggtttttgtaaaattcaaact 433
             |||||||| |||||| |||||||||||||
Sbjct: 28350 gaaaaatgagtttttttaaaattcaaact 28322
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>gb|AC116598.3| Mus musculus BAC clone RP24-419D22 from chromosome 5, complete sequence
          Length = 175438

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 88    acaacaaaacccataagaaaa 108
             |||||||||||||||||||||
Sbjct: 92042 acaacaaaacccataagaaaa 92062
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>gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, complete sequence
          Length = 165863

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 393   aagggaagaaatgaaaaatgg 413
             |||||||||||||||||||||
Sbjct: 87566 aagggaagaaatgaaaaatgg 87546
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>gb|AC105174.7| Mus musculus chromosome 5, clone RP24-230L5, complete sequence
          Length = 179947

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 88    acaacaaaacccataagaaaa 108
             |||||||||||||||||||||
Sbjct: 25868 acaacaaaacccataagaaaa 25848
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>gb|AC183426.2| Populus trichocarpa clone Pop1-45L17, complete sequence
          Length = 50019

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   taagaaaaactacaagcaaag 121
             |||||||||||||||||||||
Sbjct: 19790 taagaaaaactacaagcaaag 19810
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>gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosome 13, complete sequence
          Length = 178290

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 393    aagggaagaaatgaaaaatgg 413
              |||||||||||||||||||||
Sbjct: 148991 aagggaagaaatgaaaaatgg 148971
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>emb|AL133454.6|CNS01DV5 Human chromosome 14 DNA sequence BAC R-580E16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165159

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 29     ttctttatacttgtatgcaag 49
              |||||||||||||||||||||
Sbjct: 100640 ttctttatacttgtatgcaag 100660
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>gb|AY572268.1| Aristolochia grandiflora ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit (rbcL) gene, partial
           cds; chloroplast
          Length = 1329

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 714 gatgaaaagggcgatatttg 733
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>gb|AY572260.1| Aristolochia gigantea ribulose-1,5-bisphosphate
           carboxylase/oxygenase large subunit (rbcL) gene, partial
           cds; chloroplast
          Length = 1311

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 691 gatgaaaagggcgatatttg 710
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>gb|AC133495.4| Mus musculus BAC clone RP24-331G15 from chromosome 14, complete
             sequence
          Length = 195118

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   gtttttgtaaaattcaaact 433
             ||||||||||||||||||||
Sbjct: 29328 gtttttgtaaaattcaaact 29309
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>gb|AY616754.1| Homo sapiens biliverdin reductase A (BLVRA) gene, complete cds
          Length = 52622

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   tgggaaacagcatggtggga 296
             ||||||||||||||||||||
Sbjct: 35202 tgggaaacagcatggtggga 35183
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>gb|AC115359.5| Mus musculus BAC clone RP23-190K20 from chromosome 2, complete sequence
          Length = 184634

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   attcaaactccccttggtaa 444
             ||||||||||||||||||||
Sbjct: 99277 attcaaactccccttggtaa 99296
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>gb|DQ352370.1| Loropetalum chinense voucher Ickert-Bond 1325 ribulose
           1,5-bisphosphate carboxylase/oxygenase large subunit
           (rbcL) gene, partial cds; chloroplast
          Length = 1419

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 716 gatgaaaagggcgatatttg 735
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>gb|AC183987.3| Pan troglodytes BAC clone CH251-265I5 from chromosome 6, complete
             sequence
          Length = 162913

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ccttttgggaaacagcatgg 291
             ||||||||||||||||||||
Sbjct: 38786 ccttttgggaaacagcatgg 38805
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>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence
          Length = 160517

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ttcatttattctttatactt 40
              ||||||||||||||||||||
Sbjct: 131294 ttcatttattctttatactt 131275
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>gb|AC124425.3| Mus musculus BAC clone RP24-230N16 from chromosome 5, complete
            sequence
          Length = 178931

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   ttcatttattctttatactt 40
            ||||||||||||||||||||
Sbjct: 5708 ttcatttattctttatactt 5689
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>gb|AC125359.4| Mus musculus BAC clone RP23-102I17 from chromosome 14, complete sequence
          Length = 192163

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    gtttttgtaaaattcaaact 433
              ||||||||||||||||||||
Sbjct: 181902 gtttttgtaaaattcaaact 181883
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>gb|AC119034.2| Homo sapiens 3 BAC RP11-303O22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173651

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    agaaatgaaaaatgggtttt 418
              ||||||||||||||||||||
Sbjct: 164614 agaaatgaaaaatgggtttt 164595
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>ref|XM_765451.1| Giardia lamblia ATCC 50803 DNA-binding protein (GLP_567_29376_33209)
            partial mRNA
          Length = 3834

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  atggagtgattgataccaaa 522
            ||||||||||||||||||||
Sbjct: 1040 atggagtgattgataccaaa 1059
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>emb|AL512427.10| Human DNA sequence from clone RP11-325M4 on chromosome 6 Contains a
              retinoblastoma binding protein 4 (RBBP4) pseudogene,
              complete sequence
          Length = 201657

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ccttttgggaaacagcatgg 291
              ||||||||||||||||||||
Sbjct: 145014 ccttttgggaaacagcatgg 144995
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>emb|AL390237.9| Human DNA sequence from clone RP11-278J20 on chromosome 6 Contains a
              retinoblastoma binding protein 4 (RBBP4) pseudogene and a
              KIAA0797 pseudogene, complete sequence
          Length = 140120

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ccttttgggaaacagcatgg 291
              ||||||||||||||||||||
Sbjct: 119301 ccttttgggaaacagcatgg 119282
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>emb|AJ417690.1|AAC417690 Actinobacillus actinomycetemcomitans mukB gene
          Length = 4491

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  ctgaatcaaggcttgcaaaa 215
            ||||||||||||||||||||
Sbjct: 3847 ctgaatcaaggcttgcaaaa 3866
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>emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in linkage group 12,
             complete sequence
          Length = 126042

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    atttattctttatacttgta 43
             ||||||||||||||||||||
Sbjct: 28896 atttattctttatacttgta 28915
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>gb|AF061999.1| Loropetalum chinense ribulose 1,5-bisphosphate carboxylase (rbcL)
           gene, chloroplast gene encoding chloroplast protein,
           partial cds
          Length = 1408

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 730 gatgaaaagggcgatatttg 749
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>emb|BX537351.16| Zebrafish DNA sequence from clone DKEYP-84B10 in linkage group 17,
             complete sequence
          Length = 161005

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   gaagccttttgggaaacagc 287
             ||||||||||||||||||||
Sbjct: 14323 gaagccttttgggaaacagc 14342
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>emb|BX293556.14| Zebrafish DNA sequence from clone DKEY-21N20 in linkage group 11,
              complete sequence
          Length = 212880

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     ttgatcctgttacaacaaaa 96
              ||||||||||||||||||||
Sbjct: 190792 ttgatcctgttacaacaaaa 190811
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>dbj|AB237042.1| Loropetalum chinense chloroplast rbcL gene for
           ribulose-1,5-bisphosphate carboxylase/oxygenase large
           subunit, partial cds, clone:71
          Length = 1152

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 650 gatgaaaagggcgatatttg 669
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>gb|AC005189.2| Homo sapiens PAC clone RP5-905J8 from 7p11.2-p21, complete sequence
          Length = 176413

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  tgggaaacagcatggtggga 296
            ||||||||||||||||||||
Sbjct: 5660 tgggaaacagcatggtggga 5679
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>gb|AY034012.1| Veronicastrum sibiricum ribulose-1,5-bisphosphate carboxylase
           (rbcL) gene, partial cds; chloroplast gene for
           chloroplast product
          Length = 1263

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 687 gatgaaaagggcgatatttg 706
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>gb|AC099541.2| Homo sapiens chromosome 3 clone RP11-520A21, complete sequence
          Length = 187072

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   gaaatgaaaaatgggttttt 419
             ||||||||||||||||||||
Sbjct: 40006 gaaatgaaaaatgggttttt 39987
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>gb|AC093878.3| Homo sapiens BAC clone RP11-638O6 from 4, complete sequence
          Length = 176018

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   ttttgggaaacagcatggtg 293
             ||||||||||||||||||||
Sbjct: 17120 ttttgggaaacagcatggtg 17101
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>gb|AC104189.2| Homo sapiens chromosome 3 clone RP11-465K13, complete sequence
          Length = 179322

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   gaaatgaaaaatgggttttt 419
             ||||||||||||||||||||
Sbjct: 16631 gaaatgaaaaatgggttttt 16650
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>gb|AC008043.5| Drosophila melanogaster, chromosome 3R, region 94A-94A, BAC clone
             BACR05A08, complete sequence
          Length = 169581

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    aacaaaacccataagaaaaa 109
             ||||||||||||||||||||
Sbjct: 15308 aacaaaacccataagaaaaa 15327
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>dbj|AB205600.1| Aristolochia reniformis chloroplast rbcL gene for
           ribulose-1,5-bisphosphate carboxylase/oxygenase, partial
           cds
          Length = 1417

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 720 gatgaaaagggcgatatttg 739
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>dbj|AB205591.1| Aristolochia gigantea chloroplast rbcL gene for
           ribulose-1,5-bisphosphate carboxylase/oxygenase, partial
           cds
          Length = 1417

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 720 gatgaaaagggcgatatttg 739
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>dbj|AB205590.1| Aristolochia eriantha chloroplast rbcL gene for
           ribulose-1,5-bisphosphate carboxylase/oxygenase, partial
           cds
          Length = 1417

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 720 gatgaaaagggcgatatttg 739
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     cacagatatttgaagccttt 276
               ||||||||||||||||||||
Sbjct: 8118923 cacagatatttgaagccttt 8118942
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>gb|AC008144.5|AC008144 Drosophila melanogaster, chromosome 3R, region 93F-93F, BAC clone
             BACR04F21, complete sequence
          Length = 171226

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    aacaaaacccataagaaaaa 109
             ||||||||||||||||||||
Sbjct: 10071 aacaaaacccataagaaaaa 10052
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>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence
          Length = 245443

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ttcatttattctttatactt 40
              ||||||||||||||||||||
Sbjct: 200874 ttcatttattctttatactt 200855
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>gb|AC093590.2| Homo sapiens BAC clone RP11-47G14 from 2, complete sequence
          Length = 126965

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 392   aaagggaagaaatgaaaaatgggtttttgtaa 423
             |||||||||||| ||||||||| |||| ||||
Sbjct: 66687 aaagggaagaaaagaaaaatggattttagtaa 66718
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>gb|AC026161.4|AC026161 Homo sapiens chromosome 3 clone RP11-105K13 map 3p, complete sequence
          Length = 167579

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   caccctactactgcacttct 197
             ||||||||||||||||||||
Sbjct: 98519 caccctactactgcacttct 98500
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>emb|AL928915.24| Mouse DNA sequence from clone RP23-276J8 on chromosome 2, complete
              sequence
          Length = 145879

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    attcaaactccccttggtaa 444
              ||||||||||||||||||||
Sbjct: 142971 attcaaactccccttggtaa 142990
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>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1047A05
          Length = 157517

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   cacagatatttgaagccttt 276
             ||||||||||||||||||||
Sbjct: 87234 cacagatatttgaagccttt 87253
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>gb|AY961989.1| Homo sapiens RAD18 homolog (S. cerevisiae) (RAD18) gene, complete cds
          Length = 87575

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   caccctactactgcacttct 197
             ||||||||||||||||||||
Sbjct: 43230 caccctactactgcacttct 43211
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>gb|AE003737.3| Drosophila melanogaster chromosome 3R, section 75 of 118 of the complete
              sequence
          Length = 178251

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     aacaaaacccataagaaaaa 109
              ||||||||||||||||||||
Sbjct: 176313 aacaaaacccataagaaaaa 176332
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 406     aaaaatgggtttttgtaaaa 425
               ||||||||||||||||||||
Sbjct: 5975513 aaaaatgggtttttgtaaaa 5975532
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>emb|AJ247614.1|DSE247614 Drymonia serrulata partial chloroplast rbcL gene for ribulose
           1,5-bisphophate carboxylase, large subunit
          Length = 1329

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 gatgaaaagggcgatatttg 390
           ||||||||||||||||||||
Sbjct: 720 gatgaaaagggcgatatttg 739
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>gb|AC034186.5| Homo sapiens chromosome 3 clone RP11-19E8 map 3p, complete sequence
          Length = 150262

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    caccctactactgcacttct 197
              ||||||||||||||||||||
Sbjct: 128427 caccctactactgcacttct 128408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,520,411
Number of Sequences: 3902068
Number of extensions: 5520411
Number of successful extensions: 109742
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109507
Number of HSP's gapped (non-prelim): 220
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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