ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46h01 |
|---|---|
| Clone Library Name | barley_pub |
>PSD8_DICDI (P02889) Probable 26S proteasome non-ATPase regulatory subunit 8| (Vegetative cell protein X) (M4 protein) Length = 263 Score = 70.9 bits (172), Expect = 1e-12 Identities = 38/90 (42%), Positives = 60/90 (66%) Frame = -3 Query: 451 LLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQK 272 +LA +++++IA CSEK + LS+ DA+++ +F+ + + QQYI E + W V+ G V+ Q Sbjct: 178 ILADSIKEDIANCSEKSFKTLSLKDAEKVLLFNDNNQFQQYIKERN--WKVQ-GDVI-QF 233 Query: 271 AKESQPCKEIPAAPVINQTLGYARELERIV 182 EIP+ +I+QTL YA+ELERIV Sbjct: 234 GNNDNQTVEIPSLQLIHQTLHYAKELERIV 263
>PSD8_MOUSE (Q9CX56) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit S14) Length = 257 Score = 52.4 bits (124), Expect = 5e-07 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Frame = -3 Query: 451 LLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQK 272 +L T+RDEIAGC EK Y+ + ++A ++ FS+ K++ Y + W + + Sbjct: 169 ILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKR--GWVLGPNNYYSFA 226 Query: 271 AKESQP-CKEIPAAPVINQTLGYARELERIV 182 +++ +P IP + Q + YAR+LE IV Sbjct: 227 SQQQKPEDSTIPFTELAKQVIEYARQLEMIV 257
>PSD8_PONPY (Q5RE15) 26S proteasome non-ATPase regulatory subunit 8| Length = 257 Score = 52.0 bits (123), Expect = 7e-07 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Frame = -3 Query: 451 LLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQK 272 +L T+RDEIAGC EK Y+ + ++A ++ F++ K++ Y + W + + Sbjct: 169 ILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGPNNYYSFA 226 Query: 271 AKESQP-CKEIPAAPVINQTLGYARELERIV 182 +++ +P IP+ + Q + YAR+LE IV Sbjct: 227 SQQQKPEDTTIPSTELAKQVIEYARQLEMIV 257
>PSD8_HUMAN (P48556) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit S14) (p31) Length = 257 Score = 52.0 bits (123), Expect = 7e-07 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Frame = -3 Query: 451 LLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQK 272 +L T+RDEIAGC EK Y+ + ++A ++ F++ K++ Y + W + + Sbjct: 169 ILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR--GWVLGPNNYYSFA 226 Query: 271 AKESQP-CKEIPAAPVINQTLGYARELERIV 182 +++ +P IP+ + Q + YAR+LE IV Sbjct: 227 SQQQKPEDTTIPSTELAKQVIEYARQLEMIV 257
>RPN12_SCHPO (P50524) 26S proteasome regulatory subunit rpn12| Length = 270 Score = 47.4 bits (111), Expect = 2e-05 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 17/107 (15%) Frame = -3 Query: 451 LLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQK 272 ++ VR+EIA C+EK Y + +S+A + + KE ++ +AEE WD++DG + F K Sbjct: 166 IVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEK-LAEER-GWDIRDGVIYFPK 223 Query: 271 AK-----------------ESQPCKEIPAAPVINQTLGYARELERIV 182 E P I Q L Y ELE+IV Sbjct: 224 EANALETEDGMLIDEEDELELPPTASKHTISSIRQLLSYTSELEQIV 270
>PSD8_CAEEL (Q23449) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit rpn-12) Length = 250 Score = 47.0 bits (110), Expect = 2e-05 Identities = 26/90 (28%), Positives = 48/90 (53%) Frame = -3 Query: 451 LLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLFQK 272 ++ T+R EIA EK + L+ DA M +F +D++++++ E +W + +F+ Sbjct: 163 IMLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQER--KWHLDGERYVFEI 220 Query: 271 AKESQPCKEIPAAPVINQTLGYARELERIV 182 + + V QTL YA++LE+IV Sbjct: 221 EVAQEKPVNLDTVRVATQTLFYAKQLEQIV 250
>RPN12_YEAST (P32496) 26S proteasome regulatory subunit RPN12 (Nuclear integrity| protein 1) Length = 274 Score = 47.0 bits (110), Expect = 2e-05 Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 7/97 (7%) Frame = -3 Query: 451 LLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQQYIAEEHPEWDVKDGSVLF-- 278 +L +RDEIA +E YD+L +S+ K + F+++KE +++ E + W + + V F Sbjct: 180 ILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNSKVYFNN 237 Query: 277 ---QKA--KESQPCKEIPAAPVINQTLGYARELERIV 182 +KA ++ +E +I + + YA +E IV Sbjct: 238 QSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274
>BLS_STRCL (Q9R8E3) Carboxyethyl-arginine beta-lactam-synthase (EC 6.3.3.4)| (Beta-lactam synthetase) Length = 513 Score = 32.3 bits (72), Expect = 0.57 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = -2 Query: 359 VQLRQGTAAVHRRGTPRVGCQGRQRLVPEGEGVAALQ 249 + L GTA HR TP + +R++PEGE VAA++ Sbjct: 195 IDLGSGTAVTHRTWTPGLS----RRILPEGEAVAAVR 227
>MK14A_CYPCA (Q90336) Mitogen-activated protein kinase 14a (EC 2.7.11.24)| (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (cp38a) Length = 361 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQK 122
>MK14A_BRARE (Q9DGE2) Mitogen-activated protein kinase 14a (EC 2.7.11.24)| (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (zp38a) Length = 361 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFTPATSLKEFNDVYLVTHLMGADLNNIVKCQK 122
>MK14B_BRARE (Q9DGE1) Mitogen-activated protein kinase 14b (EC 2.7.11.24)| (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (zp38b) Length = 348 Score = 30.4 bits (67), Expect = 2.2 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFSPATSLEGFNDVYLVTHLMGADLNNIVKCQK 122
>MK14B_CYPCA (Q9I958) Mitogen-activated protein kinase 14b (EC 2.7.11.24)| (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (cp38b) Length = 361 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDAFSPATCLAGFNDVYLVTHLMGADLNNIVKCQK 122
>FTHS_RHILO (Q98HQ4) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 559 Score = 29.6 bits (65), Expect = 3.7 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 442 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELQ 335 K+VRD++ + GY L + AK + FS+D L+ Sbjct: 468 KSVRDQLHAWEQAGYGNLPVCMAKTQYSFSTDPNLR 503
>Y787_SYNY3 (Q55946) Hypothetical protein sll0787| Length = 322 Score = 29.3 bits (64), Expect = 4.8 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -2 Query: 368 DVYVQLRQGTAAVHRRGTPRVGCQGRQRLVPEGEGV 261 D+ ++L+Q +H++ QG+QRL+ +GE + Sbjct: 4 DLIIELQQTLGILHKQDIQLASRQGQQRLIGDGEAI 39
>EPHA1_HUMAN (P21709) Ephrin type-A receptor 1 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor EPH) Length = 976 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/65 (29%), Positives = 26/65 (40%) Frame = -2 Query: 344 GTAAVHRRGTPRVGCQGRQRLVPEGEGVAALQGDTGGARHQPDPWLREGIGKDCVICLSS 165 GT H R +PR R P+GE + + G H + G G+ CV C S Sbjct: 229 GTCLPHARASPRPSGAPRMHCSPDGEWLVPV-----GRCHCEPGYEEGGSGEACVACPSG 283 Query: 164 LSTLD 150 +D Sbjct: 284 SYRMD 288
>CCA1_SCHPO (Q9UTQ0) Probable tRNA nucleotidyltransferase (EC 2.7.7.25) (tRNA| adenylyltransferase) (tRNA CCA-pyrophosphorylase) (CCA-adding enzyme) Length = 500 Score = 29.3 bits (64), Expect = 4.8 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -3 Query: 358 FSSDKELQQYIAEEHPEWDVK 296 F + LQ Y+A++HP+W+ K Sbjct: 67 FEFAQHLQSYLAQQHPDWETK 87
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +1 Query: 193 PIPSRSQGSG**RAPPVSPCRAATP---SPSGTRRCRP 297 P+P R SG APP+SP + P SP G+ R P Sbjct: 664 PVPPRPPSSGPPPAPPLSPALSGLPRPASPYGSLRRHP 701
>SOS1_HUMAN (Q07889) Son of sevenless homolog 1 (SOS-1)| Length = 1333 Score = 28.5 bits (62), Expect = 8.2 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 238 PVSPCRAATPSPSGTRRCRP*HP-TRGVPLRCTAAVPCRS*T*TSASHRLLTGNHIP 405 P +P TPSP GTRR P P T+ V L A P R T HIP Sbjct: 1255 PFTPPPPQTPSPHGTRRHLPSPPLTQEVDLHSIAGPP--------VPPRQSTSQHIP 1303
>MK14_RAT (P70618) Mitogen-activated protein kinase 14 (EC 2.7.11.24)| (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (CRK1) Length = 359 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P L F + TH + ++N VKCQK Sbjct: 84 GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK 120
>MK14_PANTR (Q95NE7) Mitogen-activated protein kinase 14 (EC 2.7.11.24)| (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (Stress-activated protein kinase 2a) Length = 359 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P L F + TH + ++N VKCQK Sbjct: 84 GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK 120
>MK14_MOUSE (P47811) Mitogen-activated protein kinase 14 (EC 2.7.11.24)| (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (CRK1) Length = 359 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P L F + TH + ++N VKCQK Sbjct: 84 GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK 120
>MK14_HUMAN (Q16539) Mitogen-activated protein kinase 14 (EC 2.7.11.24)| (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) (Cytokine suppressive anti-inflammatory drug-binding protein) (CSAID-binding protein) (CSBP) (MAX-interacting prote Length = 359 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P L F + TH + ++N VKCQK Sbjct: 84 GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK 120
>MK14_CANFA (O02812) Mitogen-activated protein kinase 14 (EC 2.7.11.24)| (Mitogen-activated protein kinase p38 alpha) (MAP kinase p38 alpha) Length = 359 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1 Query: 129 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 25 GLLD P L F + TH + ++N VKCQK Sbjct: 84 GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK 120
>SPR1B_MOUSE (Q62267) Cornifin B (Small proline-rich protein 1B) (SPR1B) (SPR1| B) Length = 153 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/38 (34%), Positives = 16/38 (42%) Frame = +1 Query: 235 PPVSPCRAATPSPSGTRRCRP*HPTRGVPLRCTAAVPC 348 PP PC + +P T+ P HP P A PC Sbjct: 28 PPPEPCVSQVKTPCDTKVPEPCHPKAPEPCHPKAPEPC 65
>RNHL_NEUCR (Q9P5X8) Probable ribonuclease HI large subunit (EC 3.1.26.4)| (RNase HI large subunit) (RNase H(35)) Length = 317 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = -3 Query: 157 LWTEFPMKRWIIGLPCDSAVLFWFNRLFHPLF---PKC 53 LW + M W G P DS + W + HP+F P+C Sbjct: 218 LWADRTMA-WGSGYPSDSKCVSWLKQNMHPVFGWGPEC 254
>ACHA3_CARAU (P18845) Neuronal acetylcholine receptor protein, alpha-3 subunit| precursor (GF-alpha-3) Length = 512 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -2 Query: 299 QGRQRLVPEGEGVAALQGDTGGARHQPDPWLREGIGKDC 183 QG + GEG AAL+G GG P ++E I DC Sbjct: 389 QGAMNSLEFGEGKAALEGKKGGCPCHP---IKEAIEGDC 424 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,826,573 Number of Sequences: 219361 Number of extensions: 1467376 Number of successful extensions: 4745 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4734 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
