Clone Name | rbart46g11 |
---|---|
Clone Library Name | barley_pub |
>gb|AY963808.1| Triticum aestivum putative S-locus receptor kinase gene, partial cds; and mitochondrial Mn-superoxide dismutase (MnSOD) gene, complete cds, nuclear gene encoding mitochondrial protein Length = 11304 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 5 ccctctgttccatattagttgtcgctcatttagtacaaa 43 ||||| ||||||||||| |||||||| |||||||||||| Sbjct: 8486 ccctccgttccatattacttgtcgctgatttagtacaaa 8448 Score = 46.1 bits (23), Expect = 0.079 Identities = 35/39 (89%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgtcgctcatttagta 39 ||||||||| ||||||||||| ||||| || |||||||| Sbjct: 8402 tactccctccgttccatattacttgtcactgatttagta 8440
>emb|AJ277378.1|TTU277378 Triticum turgidum subsp. durum Pdi gene for protein disulfide isomerase, exons 1-8, clone pPDIGW2VT Length = 2721 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 4 tccctctgttccatattagttgtc 27 |||||||||||||||||||||||| Sbjct: 1349 tccctctgttccatattagttgtc 1326
>gb|AY110669.1| Zea mays CL6544_1 mRNA sequence Length = 933 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 342 ctacttcagttttgacttggcaga 365 |||||||||||||||||||||||| Sbjct: 740 ctacttcagttttgacttggcaga 717
>emb|AJ868103.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide isomerase, exons 1-10, clone GPDI-4B Length = 3527 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 4 tccctctgttccatattagttgtc 27 |||||||||||||||||||||||| Sbjct: 1380 tccctctgttccatattagttgtc 1357
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 13 tccatattagttgtcgctcatttagtacaa 42 ||||||||| ||||||||||| |||||||| Sbjct: 27836 tccatattacttgtcgctcatctagtacaa 27865
>gb|AY544178.1|AY544177S2 Triticum aestivum protein disulfide isomerase (PDI4D) gene, exons 4, 5 and partial cds Length = 441 Score = 44.1 bits (22), Expect = 0.31 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgtcgctcatttagtacaa 42 |||||||||||||| ||||||||| | ||| ||||||||||| Sbjct: 183 tactccctctgttc-atattagttattgcttatttagtacaa 223
>gb|AY544172.1|AY544172S1 Triticum aestivum protein disulfide isomerase (PDI4A) gene, exons 3 through 6 and partial cds Length = 1391 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 ccctctgttccatattagttgt 26 |||||||||||||||||||||| Sbjct: 411 ccctctgttccatattagttgt 390
>gb|AY544169.1| Aegilops tauschii protein disulfide isomerase (PDI4D) gene, complete cds Length = 3526 Score = 44.1 bits (22), Expect = 0.31 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgtcgctcatttagtacaa 42 |||||||||||||| ||||||||| | ||| ||||||||||| Sbjct: 1323 tactccctctgttc-atattagttattgcttatttagtacaa 1363
>emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3 Length = 196149 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgt 26 ||||||||||||| |||||||||||| Sbjct: 185906 tactccctctgtttcatattagttgt 185881
>emb|AJ277377.1|TTU277377 Triticum turgidum subsp. durum Pdi gene for protein disulfide isomerase, exons 1-10, clone pPDIGW1VT Length = 3476 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 ccctctgttccatattagttgt 26 |||||||||||||||||||||| Sbjct: 1341 ccctctgttccatattagttgt 1320
>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence Length = 86801 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgt 26 ||||||||||||| |||||||||||| Sbjct: 33347 tactccctctgtttcatattagttgt 33322
>dbj|AB010699.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9 Length = 61001 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgt 26 ||||||||||||| |||||||||||| Sbjct: 8994 tactccctctgtttcatattagttgt 8969
>gb|AC007627.3|AC007627 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence Length = 157000 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgt 26 ||||||||||||| |||||||||||| Sbjct: 4976 tactccctctgtttcatattagttgt 4951
>gb|AC007399.1|AC007399 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence Length = 105223 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgt 26 ||||||||||||| |||||||||||| Sbjct: 61915 tactccctctgtttcatattagttgt 61890
>emb|AJ868104.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide isomerase, exons 1-10, clone GPDI-4D Length = 3466 Score = 44.1 bits (22), Expect = 0.31 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgtcgctcatttagtacaa 42 |||||||||||||| ||||||||| | ||| ||||||||||| Sbjct: 1296 tactccctctgttc-atattagttattgcttatttagtacaa 1336
>emb|AJ868102.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide isomerase, exons 1-10, clone GPDI-4A Length = 3561 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 ccctctgttccatattagttgt 26 |||||||||||||||||||||| Sbjct: 1372 ccctctgttccatattagttgt 1351
>gb|AF007269.1|IG002N01 Arabidopsis thaliana BAC IG002N01 Length = 124225 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgt 26 ||||||||||||| |||||||||||| Sbjct: 1789 tactccctctgtttcatattagttgt 1814
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 10923946 tactccctctgttccatatta 10923966
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 57083 tactccctctgttccatatta 57063
>gb|AC105183.8| Homo sapiens chromosome 18, clone RP11-348C8, complete sequence Length = 141512 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 244 atcaggcaatccttccatctgtctt 268 ||||||||| ||||||||||||||| Sbjct: 24889 atcaggcaagccttccatctgtctt 24913
>gb|AC105094.6| Homo sapiens chromosome 18, clone RP11-1096D5, complete sequence Length = 210317 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 244 atcaggcaatccttccatctgtctt 268 ||||||||| ||||||||||||||| Sbjct: 49478 atcaggcaagccttccatctgtctt 49454
>gb|AC110997.4| Homo sapiens chromosome 18, clone RP11-56J20, complete sequence Length = 160456 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 244 atcaggcaatccttccatctgtctt 268 ||||||||| ||||||||||||||| Sbjct: 62971 atcaggcaagccttccatctgtctt 62947
>gb|AC090281.8| Homo sapiens chromosome 8, clone RP5-1009N12, complete sequence Length = 114875 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 109 ctgcagtcgaagtaatctaaaagta 133 ||||||||||||||||| ||||||| Sbjct: 43270 ctgcagtcgaagtaatcaaaaagta 43246
>gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complete sequence Length = 174347 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 ctgcagtcgaagtaatctaaaagta 133 ||||||||||||||||| ||||||| Sbjct: 138817 ctgcagtcgaagtaatcaaaaagta 138841
>emb|BX470189.5| Zebrafish DNA sequence from clone DKEY-195M1 in linkage group 5, complete sequence Length = 183070 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 cttgagcagttcagcaatcag 286 ||||||||||||||||||||| Sbjct: 66214 cttgagcagttcagcaatcag 66194
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 19641375 tactccctctgttccatatta 19641395
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 8431783 tactccctctgttccatatta 8431803
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 27385346 tactccctctgttccatatta 27385366 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 21389096 tactccctctgttccatatta 21389116
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 10922047 tactccctctgttccatatta 10922067
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 13094015 tactccctctgttccatatta 13093995 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgtcg 28 |||| ||||||| ||||||||||||||| Sbjct: 30322597 tactgcctctgtcccatattagttgtcg 30322570 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatt 20 |||||||||||||||||||| Sbjct: 24540880 tactccctctgttccatatt 24540899
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 329 gacaataaagtacctacttcagttttgacttggcaga 365 |||||| |||| |||||||||||| ||||||||||| Sbjct: 20938585 gacaatgaagtgtctacttcagtttcgacttggcaga 20938621
>dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1110C07 Length = 173859 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 329 gacaataaagtacctacttcagttttgacttggcaga 365 |||||| |||| |||||||||||| ||||||||||| Sbjct: 157027 gacaatgaagtgtctacttcagtttcgacttggcaga 157063
>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1014_G12 Length = 158830 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 329 gacaataaagtacctacttcagttttgacttggcaga 365 |||||| |||| |||||||||||| ||||||||||| Sbjct: 1787 gacaatgaagtgtctacttcagtttcgacttggcaga 1823
>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163077 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 tacaaatgagaaaaattaatt 209 ||||||||||||||||||||| Sbjct: 23569 tacaaatgagaaaaattaatt 23589
>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1217_D10 Length = 103188 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 47500 tactccctctgttccatatta 47520
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0513E02 Length = 141477 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 23596 tactccctctgttccatatta 23616
>dbj|AP005192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485A07 Length = 166397 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 4415 tactccctctgttccatatta 4435
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 128173 tactccctctgttccatatta 128193
>emb|BX005002.9| Zebrafish DNA sequence from clone CH211-130M12, complete sequence Length = 170274 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 taaagtacctacttcagtttt 354 ||||||||||||||||||||| Sbjct: 85977 taaagtacctacttcagtttt 85997
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476C12 Length = 157570 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 70592 tactccctctgttccatatta 70572
>dbj|AK068308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146J22, full insert sequence Length = 950 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 329 gacaataaagtacctacttcagttttgacttggcaga 365 |||||| |||| |||||||||||| ||||||||||| Sbjct: 778 gacaatgaagtgtctacttcagtttcgacttggcaga 742
>emb|CR792426.18| Zebrafish DNA sequence from clone DKEY-23A11 in linkage group 3, complete sequence Length = 210874 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 caatcagatgatgaagatgaa 300 ||||||||||||||||||||| Sbjct: 205435 caatcagatgatgaagatgaa 205415
>gb|AC158911.7| Mus musculus chromosome 5, clone RP24-363D4, complete sequence Length = 119381 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 gatgaactacatcaataaagg 315 ||||||||||||||||||||| Sbjct: 69410 gatgaactacatcaataaagg 69390
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 19567589 tactccctctgttccatatta 19567609
>emb|AL928967.9| Zebrafish DNA sequence from clone CH211-153A8, complete sequence Length = 186487 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 334 taaagtacctacttcagtttt 354 ||||||||||||||||||||| Sbjct: 40388 taaagtacctacttcagtttt 40408
>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133659 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tactccctctgttccatatta 21 ||||||||||||||||||||| Sbjct: 85618 tactccctctgttccatatta 85598
>gb|DQ257569.1| Hordeum vulgare subsp. vulgare clone DsA12 flanking Ds insertion sequence Length = 450 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgtcgctca 32 ||||||||||| | ||||||| |||||||||| Sbjct: 303 tactccctctgatacatattatttgtcgctca 272
>ref|NM_193445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 729 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 ctacttcagttttgacttggcaga 365 |||||||||||| ||||||||||| Sbjct: 729 ctacttcagtttcgacttggcaga 706
>gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0019E05, complete sequence Length = 129021 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatt 20 |||||||||||||||||||| Sbjct: 109489 tactccctctgttccatatt 109508
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgtcgctca 32 ||||||||||| | ||||||| |||||||||| Sbjct: 2603 tactccctctgatacatattatttgtcgctca 2572
>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12 map E60284SA, complete sequence Length = 139190 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatt 20 |||||||||||||||||||| Sbjct: 26018 tactccctctgttccatatt 26037
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 aatctaaaagtacataatga 141 |||||||||||||||||||| Sbjct: 44301 aatctaaaagtacataatga 44320
>gb|DQ464301.1| HIV-1 isolate 04CM038 from Cameroon envelope glycoprotein (env) gene, partial cds Length = 535 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 aattaattgttacagtatta 221 |||||||||||||||||||| Sbjct: 137 aattaattgttacagtatta 118
>gb|DQ464293.1| HIV-1 isolate 04CM012 from Cameroon envelope glycoprotein (env) gene, partial cds Length = 532 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 aattaattgttacagtatta 221 |||||||||||||||||||| Sbjct: 137 aattaattgttacagtatta 118
>ref|XM_390740.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10564.1) partial mRNA Length = 8961 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 atcaataaagggctcggaca 324 |||||||||||||||||||| Sbjct: 6876 atcaataaagggctcggaca 6857
>gb|AF461945.1| HIV-1 isolate FI042 from France envelope glycoprotein (env) gene, partial cds Length = 345 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 aattaattgttacagtatta 221 |||||||||||||||||||| Sbjct: 136 aattaattgttacagtatta 117
>emb|AL365366.20| Human DNA sequence from clone RP11-553N16 on chromosome 1 Contains the 3' end of the gene for a novel protein (FLJ16613), a ribosomal protein L6 (RPL6) pseudogene, the EXO1 gene for exonuclease 1, the 5' end of a ribosomal protein L23a (RPL23a) pseudogene and a CpG island, complete sequence Length = 143967 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ttgggagaaattattctgta 88 |||||||||||||||||||| Sbjct: 36821 ttgggagaaattattctgta 36802
>gb|AC131154.2| Homo sapiens 3 BAC RP13-489G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189348 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 aattattctgtaaaaggaagagtc 100 ||||||||||| |||||||||||| Sbjct: 94256 aattattctgtgaaaggaagagtc 94233
>emb|AL109837.22|HS1128N12 Human DNA sequence from clone RP5-1128N12 on chromosome 20 Contains the PGAM3P gene for phosphoglycerate mutase 3 pseudogene and a CpG island, complete sequence Length = 139214 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcaggcaatccttccatctg 264 |||||||||||||||||||| Sbjct: 85400 tcaggcaatccttccatctg 85381
>gb|BT009524.1| Triticum aestivum clone wr1.pk0108.c6:fis, full insert mRNA sequence Length = 874 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 aaatgctgcagtcgaagtaatcta 127 ||||||||||| |||||||||||| Sbjct: 364 aaatgctgcagccgaagtaatcta 387
>emb|X65606.1|HVBKIN12G H.vulgare BKIN12 gene for protein kinase Length = 5574 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 tccatattagttgtcgctcattta 36 |||||||||||||||||| ||||| Sbjct: 4008 tccatattagttgtcgctgattta 3985
>emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in linkage group 6, complete sequence Length = 219514 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gtacaaatgagaaaaattaa 207 |||||||||||||||||||| Sbjct: 34515 gtacaaatgagaaaaattaa 34496
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 atcagatgatgaagatgaac 301 |||||||||||||||||||| Sbjct: 430407 atcagatgatgaagatgaac 430388
>emb|CR559943.6| Zebrafish DNA sequence from clone CH211-200O8 in linkage group 13, complete sequence Length = 147505 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 aattattctgtaaaaggaagagtc 100 ||||||||| |||||||||||||| Sbjct: 57065 aattattctttaaaaggaagagtc 57088
>emb|BX664752.20| Zebrafish DNA sequence from clone DKEYP-111E5 in linkage group 6, complete sequence Length = 156503 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 aatgagaaaaattaattgtt 212 |||||||||||||||||||| Sbjct: 13281 aatgagaaaaattaattgtt 13262
>gb|AC183494.1| Brassica oleracea Contig C, complete sequence Length = 285752 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgtcg 28 ||||||||| ||| |||||||||||||| Sbjct: 133319 tactccctccgtttcatattagttgtcg 133346
>emb|AL831730.18| Zebrafish DNA sequence from clone DKEY-76A17 in linkage group 6, complete sequence Length = 159826 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gtacaaatgagaaaaattaa 207 |||||||||||||||||||| Sbjct: 154618 gtacaaatgagaaaaattaa 154599
>ref|XM_396199.2| PREDICTED: Apis mellifera similar to Nuclear pore complex protein Nup160 homolog (LOC412746), mRNA Length = 8160 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 aatcagatgatgaagatgaa 300 |||||||||||||||||||| Sbjct: 6353 aatcagatgatgaagatgaa 6372
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatt 20 |||||||||||||||||||| Sbjct: 17234687 tactccctctgttccatatt 17234706
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 ccctctgttccatattagttgtcg 28 ||||| |||||||||||||||||| Sbjct: 17024854 ccctccgttccatattagttgtcg 17024877 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tactccctctgttccatatt 20 |||||||||||||||||||| Sbjct: 5897865 tactccctctgttccatatt 5897846
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgtcg 28 ||||| |||| ||||||||||||||||| Sbjct: 14808614 tactctctctattccatattagttgtcg 14808641
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 aatctaaaagtacataatga 141 |||||||||||||||||||| Sbjct: 27813884 aatctaaaagtacataatga 27813903
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete sequence Length = 135216 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 ccctctgttccatattagttgtcg 28 ||||| |||||||||||||||||| Sbjct: 65346 ccctccgttccatattagttgtcg 65369
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgtcg 28 ||||| |||| ||||||||||||||||| Sbjct: 94003 tactctctctattccatattagttgtcg 94030
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0014G10 Length = 164147 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 tactccctctgttccatattagttgtcg 28 ||||| |||| ||||||||||||||||| Sbjct: 16953 tactctctctattccatattagttgtcg 16980
>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1014_H03 Length = 132696 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatt 20 |||||||||||||||||||| Sbjct: 54981 tactccctctgttccatatt 55000
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgtcg 28 |||| ||||||| ||||||||||||||| Sbjct: 3457 tactgcctctgtcccatattagttgtcg 3430
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 tactccctctgttccatattagttgtcg 28 |||| ||||||| ||||||||||||||| Sbjct: 123514 tactgcctctgtcccatattagttgtcg 123487
>emb|AL845324.16| Zebrafish DNA sequence from clone CH211-122L14 in linkage group 20, complete sequence Length = 160892 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 atcagatgatgaagatgaac 301 |||||||||||||||||||| Sbjct: 53305 atcagatgatgaagatgaac 53286
>gb|AC004664.1|AC004664 Homo sapiens chromosome 4 clone C0500H20 map 4p16, complete sequence Length = 172072 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 tacctacttcagttttgact 358 |||||||||||||||||||| Sbjct: 33014 tacctacttcagttttgact 32995
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 ccctctgttccatattagttgtcg 28 ||||| |||||||||||||||||| Sbjct: 17033894 ccctccgttccatattagttgtcg 17033917 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tactccctctgttccatatt 20 |||||||||||||||||||| Sbjct: 5899051 tactccctctgttccatatt 5899032
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tactccctctgttccatatt 20 |||||||||||||||||||| Sbjct: 17329873 tactccctctgttccatatt 17329892 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,855,000 Number of Sequences: 3902068 Number of extensions: 3855000 Number of successful extensions: 92811 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 91962 Number of HSP's gapped (non-prelim): 852 length of query: 365 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 343 effective length of database: 17,147,199,772 effective search space: 5881489521796 effective search space used: 5881489521796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)