>NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 699

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/63 (38%), Positives = 36/63 (57%)
 Frame = -3

Query: 481 DERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDLQTHSIK 302
           D R+ DNS+ AK GA   +G +A ++L   +G+ FRHE           G I +Q +SIK
Sbjct: 636 DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIK 695

Query: 301 FNN 293
           F++
Sbjct: 696 FDS 698

>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 704

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = -3

Query: 481 DERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDLQTHSIK 302
           D R+ DNS+ AK GA   +G +A ++L   +G+ FRHE           G I +Q +S+K
Sbjct: 641 DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVK 700

Query: 301 FNN 293
           F++
Sbjct: 701 FDS 703

>SRP40_YEAST (P32583) Suppressor protein SRP40|
          Length = 406

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 25/67 (37%), Positives = 32/67 (47%)
 Frame = -3

Query: 493 IKFADERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDLQT 314
           I F    L DN+Y    GA   +G KA E LG+VRG+DF              G I L++
Sbjct: 343 INFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGSYRGGSITLES 399

Query: 313 HSIKFNN 293
            S KF +
Sbjct: 400 GSYKFQD 406

>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor|
          Length = 332

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -1

Query: 468 KIIRIGLRVVLTLGTV--RRHRRFLDKLEEGILGTRRPRRSAEPT 340
           K+I+  LR+V+++     +R+  FLD ++EG LG  R     +PT
Sbjct: 100 KMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPT 144

>VG12_BPP22 (P03006) Replicative DNA helicase (EC 3.6.1.-) (Replication protein|
           gp12)
          Length = 458

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 450 LRVVLTLGTVRRHRRFLDKLEEGILGTRRPRRSAEPTRVGSLI 322
           +R  ++ GT+    R +D+L + +   R+PR   +P R+G +I
Sbjct: 109 MREPISNGTLDASGRAMDELVKRLSSIRKPRNEVKPVRLGEII 151

>YMFP_ECOLI (P75981) Hypothetical protein ymfP in lambdoid prophage e14 region|
          Length = 263

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 499 EDIKFADERLQDNSYWA-KGGADSGYGAKAQEILGQVRGRDFRH 371
           E+++    R+ +  YW  +GGAD  Y   A+E+ G  R   +RH
Sbjct: 88  EELETWRARVIERYYWTPQGGADGDYVVWAKEVPGITRAWTYRH 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,450,610
Number of Sequences: 219361
Number of extensions: 1287005
Number of successful extensions: 3307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3307
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)