ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46g05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB118018.1| Oryza sativa (japonica cultivar-group) bip132 mRNA for BRI1-KD interacting protein 132, partial cds Length = 1131 Score = 212 bits (107), Expect = 8e-52 Identities = 191/219 (87%) Strand = Plus / Minus Query: 274 gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 333 ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| || || Sbjct: 869 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 810 Query: 334 cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaa 393 ||||| |||||||||| |||||||||||||||||||| || ||||| |||||||||||| Sbjct: 809 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaagccccttcctctaa 750 Query: 394 cttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcaccacccttagccc 453 |||| ||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 749 cttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcaccacccttagccc 690 Query: 454 aatacgaattatcttgtagtctttcatcagcaaatttaa 492 |||| || ||||| || || || |||||||||||||||| Sbjct: 689 aatatgagttatcctgaagcctatcatcagcaaatttaa 651
>dbj|AK101273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033A11, full insert sequence Length = 1604 Score = 212 bits (107), Expect = 8e-52 Identities = 191/219 (87%) Strand = Plus / Minus Query: 274 gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 333 ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| || || Sbjct: 1361 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 1302 Query: 334 cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaa 393 ||||| |||||||||| |||||||||||||||||||| || ||||| |||||||||||| Sbjct: 1301 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaagccccttcctctaa 1242 Query: 394 cttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcaccacccttagccc 453 |||| ||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 1241 cttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcaccacccttagccc 1182 Query: 454 aatacgaattatcttgtagtctttcatcagcaaatttaa 492 |||| || ||||| || || || |||||||||||||||| Sbjct: 1181 aatatgagttatcctgaagcctatcatcagcaaatttaa 1143
>gb|AY111278.1| Zea mays CL31341_-1 mRNA sequence Length = 625 Score = 127 bits (64), Expect = 4e-26 Identities = 173/211 (81%) Strand = Plus / Plus Query: 278 tcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacccacc 337 |||||||||||||||||| | ||||| |||||||||||||| || || || ||| || Sbjct: 245 tcactcgtcgtctgaattctcgaacttgatcgagtgggtttgcaggtcgatttgcccgcc 304 Query: 338 cttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 397 | ||||||| || |||||||||||||| |||||||||||||| |||| | ||||| Sbjct: 305 cctgtaggtgccacgcttcttcttggttttctcgtgcctaaannnnnttcccttgacttg 364 Query: 398 tccaagaatctcctgtgccttcgcaccgtacccagagtcagcaccacccttagcccaata 457 ||||| |||||||||||||| || ||||| || | ||| || ||||||||||||||||| Sbjct: 365 gccaaggatctcctgtgcctttgcgccgtaaccggtgtctgcgccacccttagcccaata 424 Query: 458 cgaattatcttgtagtctttcatcagcaaat 488 ||| ||||| || || || ||||| |||||| Sbjct: 425 cgagttatcctgaagcctgtcatctgcaaat 455
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 99.6 bits (50), Expect = 8e-18 Identities = 92/106 (86%) Strand = Plus / Minus Query: 274 gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 333 ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| || || Sbjct: 26026469 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 26026410 Query: 334 cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaa 379 ||||| |||||||||| |||||||||||||||||||| || ||||| Sbjct: 26026409 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaa 26026364 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 383 ccttcctctaacttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcacc 442 ||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||||| ||||| Sbjct: 26026236 ccttcctctaacttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcacc 26026177 Query: 443 accct 447 ||||| Sbjct: 26026176 accct 26026172 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 445 ccttagcccaatacgaattatcttgtagtctttcatcagcaaatttaa 492 ||||||||||||| || ||||| || || || |||||||||||||||| Sbjct: 26025596 ccttagcccaatatgagttatcctgaagcctatcatcagcaaatttaa 26025549
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 99.6 bits (50), Expect = 8e-18 Identities = 92/106 (86%) Strand = Plus / Minus Query: 274 gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 333 ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| || || Sbjct: 25954645 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 25954586 Query: 334 cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaa 379 ||||| |||||||||| |||||||||||||||||||| || ||||| Sbjct: 25954585 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaa 25954540 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Minus Query: 383 ccttcctctaacttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcacc 442 ||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||||| ||||| Sbjct: 25954412 ccttcctctaacttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcacc 25954353 Query: 443 accct 447 ||||| Sbjct: 25954352 accct 25954348 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Minus Query: 445 ccttagcccaatacgaattatcttgtagtctttcatcagcaaatttaa 492 ||||||||||||| || ||||| || || || |||||||||||||||| Sbjct: 25953772 ccttagcccaatatgagttatcctgaagcctatcatcagcaaatttaa 25953725
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 99.6 bits (50), Expect = 8e-18 Identities = 92/106 (86%) Strand = Plus / Plus Query: 274 gcgatcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacc 333 ||||||||||||| ||||||| ||| ||||| || ||||||||||||| ||| || || Sbjct: 85202 gcgatcactcgtcatctgaatcgttgaacttgattgagtgggtttgtaaatcgatctgcc 85261 Query: 334 cacccttgtaggttccgcgcttcttcttggtcttctcgtgcctaaa 379 ||||| |||||||||| |||||||||||||||||||| || ||||| Sbjct: 85262 cacccctgtaggttccacgcttcttcttggtcttctcatgtctaaa 85307 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 383 ccttcctctaacttgtccaagaatctcctgtgccttcgcaccgtacccagagtcagcacc 442 ||||||||||||||| ||||||| ||| |||||||| ||||| ||||||||||| ||||| Sbjct: 85435 ccttcctctaacttgcccaagaacctcttgtgcctttgcaccatacccagagtctgcacc 85494 Query: 443 accct 447 ||||| Sbjct: 85495 accct 85499 Score = 48.1 bits (24), Expect = 0.028 Identities = 42/48 (87%) Strand = Plus / Plus Query: 445 ccttagcccaatacgaattatcttgtagtctttcatcagcaaatttaa 492 ||||||||||||| || ||||| || || || |||||||||||||||| Sbjct: 86075 ccttagcccaatatgagttatcctgaagcctatcatcagcaaatttaa 86122
>gb|AC174357.6| Medicago truncatula clone mth2-26c10, complete sequence Length = 98743 Score = 56.0 bits (28), Expect = 1e-04 Identities = 88/108 (81%) Strand = Plus / Plus Query: 278 tcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacccacc 337 |||||| || ||||||| |||||||||| ||||||| |||| |||||| | ||||| Sbjct: 95178 tcactcctcatctgaataattaaacttaactgagtgggaatgtaaatcaataagtccacc 95237 Query: 338 cttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatccct 385 | | ||||| || || |||||||||||||| ||||| | ||||||||| Sbjct: 95238 cctataggtcccacgtttcttcttggtcttttcgtggcgaaaatccct 95285
>gb|AC126781.22| Medicago truncatula clone mth2-12m15, complete sequence Length = 116119 Score = 56.0 bits (28), Expect = 1e-04 Identities = 88/108 (81%) Strand = Plus / Minus Query: 278 tcactcgtcgtctgaattgttaaacttaatcgagtgggtttgtagatcaatgaacccacc 337 |||||| || ||||||| |||||||||| ||||||| |||| |||||| | ||||| Sbjct: 105883 tcactcctcatctgaataattaaacttaactgagtgggaatgtaaatcaataagtccacc 105824 Query: 338 cttgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatccct 385 | | ||||| || || |||||||||||||| ||||| | ||||||||| Sbjct: 105823 cctataggtcccacgtttcttcttggtcttttcgtggcgaaaatccct 105776
>gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178607 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 348 ccgcgcttcttcttggtcttctcgtg 373 |||||||||||||||||||||||||| Sbjct: 50329 ccgcgcttcttcttggtcttctcgtg 50304
>ref|NM_168941.2| Drosophila melanogaster Nopp140 CG7421-RA, transcript variant A (Nopp140), mRNA Length = 3104 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 348 ccgcgcttcttcttggtcttctcgtg 373 |||||||||||||||||||||||||| Sbjct: 2497 ccgcgcttcttcttggtcttctcgtg 2472
>ref|NM_168940.1| Drosophila melanogaster Nopp140 CG7421-RB, transcript variant B (Nopp140), mRNA Length = 2747 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 348 ccgcgcttcttcttggtcttctcgtg 373 |||||||||||||||||||||||||| Sbjct: 2140 ccgcgcttcttcttggtcttctcgtg 2115
>gb|AY061181.1| Drosophila melanogaster LD14807 full length cDNA Length = 1585 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 348 ccgcgcttcttcttggtcttctcgtg 373 |||||||||||||||||||||||||| Sbjct: 961 ccgcgcttcttcttggtcttctcgtg 936
>gb|BT021407.1| Drosophila melanogaster LD06749 full insert cDNA Length = 3072 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 348 ccgcgcttcttcttggtcttctcgtg 373 |||||||||||||||||||||||||| Sbjct: 2457 ccgcgcttcttcttggtcttctcgtg 2432
>gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76 of 83 of the complete sequence Length = 294272 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 348 ccgcgcttcttcttggtcttctcgtg 373 |||||||||||||||||||||||||| Sbjct: 255589 ccgcgcttcttcttggtcttctcgtg 255564
>gb|AF162774.2| Drosophila melanogaster Nopp140-like nucleolar protein (Nopp140) mRNA, complete cds Length = 3028 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 348 ccgcgcttcttcttggtcttctcgtg 373 |||||||||||||||||||||||||| Sbjct: 2399 ccgcgcttcttcttggtcttctcgtg 2374
>ref|NM_125094.2| Arabidopsis thaliana unknown protein AT5G57120 mRNA, complete cds Length = 1333 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Minus Query: 340 tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 397 ||||| |||| || |||||||| |||||||| || | |||||||||||||| ||||| Sbjct: 1041 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 984
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 472 gtctttcatcagcaaatttaatatct 497 ||||||||||| |||||||||||||| Sbjct: 500933 gtctttcatcatcaaatttaatatct 500908
>gb|AE014212.1| Streptococcus agalactiae 2603V/R section 22 of 100 of the complete genome Length = 20965 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 472 gtctttcatcagcaaatttaatatct 497 ||||||||||| |||||||||||||| Sbjct: 18968 gtctttcatcatcaaatttaatatct 18943
>emb|AL766845.1|SAG766845 Streptococcus agalactiae NEM316 complete genome, segment 3 Length = 178050 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 472 gtctttcatcagcaaatttaatatct 497 ||||||||||| |||||||||||||| Sbjct: 143460 gtctttcatcatcaaatttaatatct 143435
>gb|AY127952.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, complete cds Length = 993 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Minus Query: 340 tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 397 ||||| |||| || |||||||| |||||||| || | |||||||||||||| ||||| Sbjct: 928 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 871
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 10217359 tagtctttcatcagcaagtttaatat 10217384
>gb|DP000055.1| Pan troglodytes chromosome Y chry_random_1 genomic scaffold Length = 276070 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 131368 tagtctttcatcagcaagtttaatat 131393
>gb|AC164571.3| Pan troglodytes BAC clone CH251-967O8 from chromosome y, complete sequence Length = 225200 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 210424 tagtctttcatcagcaagtttaatat 210449
>gb|AY056089.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, complete cds Length = 549 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Minus Query: 340 tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 397 ||||| |||| || |||||||| |||||||| || | |||||||||||||| ||||| Sbjct: 484 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 427
>gb|AY045686.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, complete cds Length = 1258 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Minus Query: 340 tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 397 ||||| |||| || |||||||| |||||||| || | |||||||||||||| ||||| Sbjct: 1037 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 980
>gb|AY037212.1| Arabidopsis thaliana AT5g57120/MUL3_6 mRNA, complete cds Length = 1279 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Minus Query: 340 tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 397 ||||| |||| || |||||||| |||||||| || | |||||||||||||| ||||| Sbjct: 1036 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 979
>gb|AC175060.2| Pan troglodytes BAC clone CH251-724O9 from chromosome y, complete sequence Length = 196548 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 51840 tagtctttcatcagcaagtttaatat 51865
>gb|AC172373.3| Pan troglodytes BAC clone CH251-1081D19 from chromosome y, complete sequence Length = 194913 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 168646 tagtctttcatcagcaagtttaatat 168621
>gb|AY084589.1| Arabidopsis thaliana clone 11265 mRNA, complete sequence Length = 1258 Score = 44.1 bits (22), Expect = 0.43 Identities = 49/58 (84%) Strand = Plus / Minus Query: 340 tgtaggttccgcgcttcttcttggtcttctcgtgcctaaaatcccttcctctaacttg 397 ||||| |||| || |||||||| |||||||| || | |||||||||||||| ||||| Sbjct: 1041 tgtagcttcctcgtttcttcttcgtcttctcatgtcggaaatcccttcctctcacttg 984
>gb|AC163766.3| Pan troglodytes BAC clone CH251-115P4 from chromosome y, complete sequence Length = 185225 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 13858 tagtctttcatcagcaactttaatat 13833
>gb|AC163728.4| Pan troglodytes BAC clone CH251-589C1 from chromosome y, complete sequence Length = 206451 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 66751 tagtctttcatcagcaagtttaatat 66776
>gb|AC163716.3| Pan troglodytes BAC clone CH251-828J24 from chromosome y, complete sequence Length = 165274 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 99825 tagtctttcatcagcaagtttaatat 99800
>gb|AC163727.3| Pan troglodytes BAC clone CH251-1132L6 from chromosome y, complete sequence Length = 191546 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 470 tagtctttcatcagcaaatttaatat 495 ||||||||||||||||| |||||||| Sbjct: 131354 tagtctttcatcagcaagtttaatat 131379
>dbj|AP006140.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT37A01, TM0244, complete sequence Length = 102724 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Minus Query: 383 ccttcctctaacttgtccaagaatctcctgtgccttcgcacc 424 ||||||||||||||| |||||||| || ||||| || ||||| Sbjct: 88860 ccttcctctaacttggccaagaatttcttgtgcttttgcacc 88819 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 297 ttaaacttaatcgagtgggtttgtagatcaat 328 |||||||| || ||||||| |||||||||||| Sbjct: 89299 ttaaactttattgagtgggattgtagatcaat 89268
>gb|DP000056.1| Pan troglodytes chromosome Y chry_random_3 genomic scaffold Length = 331329 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 tagtctttcatcagcaaatttaata 494 ||||||||||||||||| ||||||| Sbjct: 194965 tagtctttcatcagcaagtttaata 194989
>gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete sequence Length = 86223 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 aaaatggtacgtctcactgag 90 ||||||||||||||||||||| Sbjct: 52718 aaaatggtacgtctcactgag 52698
>gb|AC163726.3| Pan troglodytes BAC clone CH251-653B19 from chromosome y, complete sequence Length = 207364 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 470 tagtctttcatcagcaaatttaata 494 ||||||||||||||||| ||||||| Sbjct: 71013 tagtctttcatcagcaagtttaata 71037
>gb|U37548.1| Caenorhabditis elegans cosmid C54D2, complete sequence Length = 43589 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 18 tacaacaatacttactacgcagta 41 ||||||||||||| |||||||||| Sbjct: 13335 tacaacaatacttcctacgcagta 13312
>ref|XM_457674.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B16775g) partial mRNA Length = 4527 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ttcaatgcttttgcttcttt 175 |||||||||||||||||||| Sbjct: 1687 ttcaatgcttttgcttcttt 1706
>gb|AC151903.3| Mus musculus BAC clone RP23-216I7 from chromosome 14, complete sequence Length = 232727 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 atggggaaatgtcacaagac 260 |||||||||||||||||||| Sbjct: 38280 atggggaaatgtcacaagac 38299
>gb|BT006020.1| Drosophila melanogaster GM04911 full insert cDNA Length = 2069 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 acaattcaatgcttttgctt 171 |||||||||||||||||||| Sbjct: 850 acaattcaatgcttttgctt 869
>gb|AC122479.3| Mus musculus BAC clone RP24-344E5 from chromosome 14, complete sequence Length = 185254 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 atggggaaatgtcacaagac 260 |||||||||||||||||||| Sbjct: 56739 atggggaaatgtcacaagac 56720
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ttcaatgcttttgcttcttt 175 |||||||||||||||||||| Sbjct: 1322806 ttcaatgcttttgcttcttt 1322787
>ref|NM_001039730.1| Xenopus tropicalis nucleolar and coiled-body phosphoprotein 1 (nolc1), mRNA Length = 3167 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ttcttcttggtcttctcgtg 373 |||||||||||||||||||| Sbjct: 2711 ttcttcttggtcttctcgtg 2692
>emb|AL121800.1|DMBN5I9 Drosophila melanogaster BAC clone BACN5I9 Length = 96433 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 acaattcaatgcttttgctt 171 |||||||||||||||||||| Sbjct: 10167 acaattcaatgcttttgctt 10148
>emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chromosome 11 Contains the 3' end of a novel gene, two novel genes, the 5' end of the Brip1 gene for BRCA1 interacting protein C-terminal helicase 1 and a mitochondrial F0 complex H+ transporting ATP synthase subunit g (Atp5l) pseudogene, complete sequence Length = 200624 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ggggaaatgtcacaagactt 262 |||||||||||||||||||| Sbjct: 82763 ggggaaatgtcacaagactt 82744
>emb|AL731821.10| Mouse DNA sequence from clone RP23-81G15 on chromosome 4, complete sequence Length = 126671 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ttcttcctttcagcaagact 219 |||||||||||||||||||| Sbjct: 104222 ttcttcctttcagcaagact 104241
>gb|AC108480.3| Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175996 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 acaattcaatgcttttgctt 171 |||||||||||||||||||| Sbjct: 157371 acaattcaatgcttttgctt 157352
>dbj|AK137575.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830145M22 product:hypothetical protein, full insert sequence Length = 2315 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ggggaaatgtcacaagactt 262 |||||||||||||||||||| Sbjct: 1329 ggggaaatgtcacaagactt 1348
>gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, complete sequence Length = 143642 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tgccttcacttcttcctttc 210 |||||||||||||||||||| Sbjct: 6810 tgccttcacttcttcctttc 6791
>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16, complete sequence Length = 196875 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acaacaattcaatgcttttg 168 |||||||||||||||||||| Sbjct: 144733 acaacaattcaatgcttttg 144714
>emb|AJ011432.1|RNO011432 Rattus norvegicus gdnf gene Length = 19571 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gttccgcgcttcttcttggt 364 |||||||||||||||||||| Sbjct: 10199 gttccgcgcttcttcttggt 10218
>emb|CR848207.2| Xenopus tropicalis finished cDNA, clone TGas105h10 Length = 3167 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ttcttcttggtcttctcgtg 373 |||||||||||||||||||| Sbjct: 2711 ttcttcttggtcttctcgtg 2692
>gb|AE003427.3| Drosophila melanogaster chromosome X, section 11 of 74 of the complete sequence Length = 213230 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 acaattcaatgcttttgctt 171 |||||||||||||||||||| Sbjct: 47045 acaattcaatgcttttgctt 47064
>gb|AC124711.3| Mus musculus BAC clone RP24-100M12 from 12, complete sequence Length = 225134 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 tctttcatcagcaaatttaa 492 |||||||||||||||||||| Sbjct: 82601 tctttcatcagcaaatttaa 82620
>gb|AF023840.1|AF023840 Homo sapiens natural killer group protein 2-A (NKG2-A) gene, complete cds Length = 17549 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 aatcgagtgggtttgtagatcaat 328 |||| ||||||||||||||||||| Sbjct: 3272 aatctagtgggtttgtagatcaat 3295
>gb|BC064870.1| Xenopus tropicalis nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone IMAGE:5335805), partial cds Length = 3154 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ttcttcttggtcttctcgtg 373 |||||||||||||||||||| Sbjct: 2685 ttcttcttggtcttctcgtg 2666 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,808,255 Number of Sequences: 3902068 Number of extensions: 4808255 Number of successful extensions: 89864 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89691 Number of HSP's gapped (non-prelim): 172 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
