ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46g04 |
|---|---|
| Clone Library Name | barley_pub |
>NUOL_RICPR (Q9ZCG1) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH| dehydrogenase I, chain L) (NDH-1, chain L) Length = 653 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/63 (26%), Positives = 33/63 (52%) Frame = -2 Query: 339 KVMKGGWNVHLDALFPQLILCGMVVITSIPFYEAMFLRKDKGRIPFQVTLAFIGFVMLAL 160 K ++ W++++D L + + V + + Y ++ +DKG I F L+ F ML L Sbjct: 73 KNLQVNWSIYIDQLTSIMFIAVTFVSSVVHIYSLGYMAEDKGIIRFLSFLSLFTFFMLML 132 Query: 159 LAA 151 ++A Sbjct: 133 VSA 135
>NUOL_RICCN (Q92G97) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH| dehydrogenase I, chain L) (NDH-1, chain L) Length = 657 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/60 (26%), Positives = 31/60 (51%) Frame = -2 Query: 330 KGGWNVHLDALFPQLILCGMVVITSIPFYEAMFLRKDKGRIPFQVTLAFIGFVMLALLAA 151 K W++++D L + + V + + Y ++ +DKG I F L+ F ML L+++ Sbjct: 76 KVNWSIYIDQLTSIMFIAVTWVSSIVHIYSLGYMAEDKGIIRFLSFLSLFTFFMLMLVSS 135
>NU5M_TRIRE (Q8SHP7) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3)| Length = 692 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Frame = -2 Query: 321 WNVHLDALFPQLILCGMVVITSIPFYEAMFLRKDKGRIPFQVTLAFIGFVMLALLAA--- 151 WN D+L +++ +V+ + + FY ++ D F L+ F+M+ L+ Sbjct: 74 WNFQFDSLTVSMLIPVLVISSLVHFYSIGYMSHDPHSQRFFSYLSLFTFMMIILVTGNNY 133 Query: 150 --MV*GPTRSTVCD*VLKLVWF 91 M G VC +L WF Sbjct: 134 LLMFVGWEGVGVCSYLLVSFWF 155
>ENV_FENV1 (P31791) Env polyprotein precursor [Contains: Glycoprotein GP70;| Transmembrane protein p15E] Length = 671 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 235 VPEEGQRQNTIPSYTSFYWLCDVGLTGCNGLR 140 VP GQ + + YW+C+ GLT C L+ Sbjct: 401 VPSVGQGPYYLTAPNGTYWVCNTGLTPCISLQ 432
>ATPG_CLOPA (Q93Q45) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 281 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +1 Query: 220 VLPQEHCFIEWDTGDHHHPTENELGEKCIQVYIPSTFHDF---A*PSQQANKVEQRDS 384 VLP + I++D P NEL E + VY+ S +F + S+QA+K+ DS Sbjct: 185 VLPFDMKDIKYDGSIEFEPEINELIEGIVAVYLKSQLFNFLLNSKASEQASKMTAMDS 242
>RL8_XENTR (Q6PBF0) 60S ribosomal protein L8| Length = 256 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -1 Query: 379 RVALPCLPAGRAKQSHERWMECTP---GCTFPPAHSLWDGGDHQY 254 R+ P L AGRA ++ C P G P + GG+HQ+ Sbjct: 173 RIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 217
>RL8_XENLA (P41116) 60S ribosomal protein L8| Length = 256 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -1 Query: 379 RVALPCLPAGRAKQSHERWMECTP---GCTFPPAHSLWDGGDHQY 254 R+ P L AGRA ++ C P G P + GG+HQ+ Sbjct: 173 RIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 217
>RL8_RAT (P62919) 60S ribosomal protein L8| Length = 256 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -1 Query: 379 RVALPCLPAGRAKQSHERWMECTP---GCTFPPAHSLWDGGDHQY 254 R+ P L AGRA ++ C P G P + GG+HQ+ Sbjct: 173 RIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 217
>RL8_PONPY (Q5R7Y8) 60S ribosomal protein L8| Length = 256 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -1 Query: 379 RVALPCLPAGRAKQSHERWMECTP---GCTFPPAHSLWDGGDHQY 254 R+ P L AGRA ++ C P G P + GG+HQ+ Sbjct: 173 RIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 217
>RL8_MOUSE (P62918) 60S ribosomal protein L8| Length = 256 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -1 Query: 379 RVALPCLPAGRAKQSHERWMECTP---GCTFPPAHSLWDGGDHQY 254 R+ P L AGRA ++ C P G P + GG+HQ+ Sbjct: 173 RIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 217
>RL8_HUMAN (P62917) 60S ribosomal protein L8| Length = 256 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -1 Query: 379 RVALPCLPAGRAKQSHERWMECTP---GCTFPPAHSLWDGGDHQY 254 R+ P L AGRA ++ C P G P + GG+HQ+ Sbjct: 173 RIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 217
>RL8_BRARE (Q6P0V6) 60S ribosomal protein L8| Length = 256 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -1 Query: 379 RVALPCLPAGRAKQSHERWMECTP---GCTFPPAHSLWDGGDHQY 254 R+ P L AGRA ++ C P G P + GG+HQ+ Sbjct: 173 RIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 217
>POLG_DEN3 (P27915) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3390 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 15/67 (22%) Frame = -1 Query: 421 IRVVGTGICDHRDYRVALPCLPAGRAKQSHERWMECTPG---------------CTFPPA 287 +R V T +CDHR A+ A A + W+E CT+P + Sbjct: 944 LREVYTQLCDHRLMSAAVKDERAVHADMGY--WIESQKNGSWKLEKASLIEVKTCTWPKS 1001 Query: 286 HSLWDGG 266 H+LW G Sbjct: 1002 HTLWSNG 1008 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,544,890 Number of Sequences: 219361 Number of extensions: 1650596 Number of successful extensions: 3443 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3340 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3443 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
