Clone Name | rbart46g02 |
---|---|
Clone Library Name | barley_pub |
>TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrinsic protein| 1.2) (OsTIP1.2) Length = 252 Score = 34.3 bits (77), Expect = 0.075 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -1 Query: 382 FIGQRPHEQLPTAEY 338 FIGQRPH+QLPTA+Y Sbjct: 238 FIGQRPHDQLPTADY 252
>SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 955 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +2 Query: 110 INLDHGIKAFITEDVHQDKRLFLTDSHTV-----YPEF---LKDKRVTMKLNWL 247 + L H I FITE + Q +L S +PE+ L DK++ +++NW+ Sbjct: 747 LKLAHPIMPFITETIWQRIKLIQNISEKTIMLQDFPEYNHKLFDKKILVQMNWM 800
>RS13_EHRRW (Q5HAU3) 30S ribosomal protein S13| Length = 123 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +2 Query: 95 QICTNINLDHGIKAF-ITEDVHQDKRLFLTDSHTVYPEFLKDKRVTMKLNWLTD 253 +IC + N+DH I+ +++D R F+ +++ V + K+ V+M + +LTD Sbjct: 32 KICESCNIDHNIRVVNLSDDEIIRIRNFIRENYVVEGDLRKE--VSMNIKFLTD 83
>RS13_EHRRG (Q5FFR9) 30S ribosomal protein S13| Length = 123 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +2 Query: 95 QICTNINLDHGIKAF-ITEDVHQDKRLFLTDSHTVYPEFLKDKRVTMKLNWLTD 253 +IC + N+DH I+ +++D R F+ +++ V + K+ V+M + +LTD Sbjct: 32 KICESCNIDHNIRVVNLSDDEIIRIRNFIRENYVVEGDLRKE--VSMNIKFLTD 83
>YCE5_YEAST (P25574) Hypothetical 87.2 kDa protein in APA1/DTP-PDI1 intergenic| region Length = 760 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +2 Query: 107 NINLDHGIKAFITEDVHQDKRLFLTDSHTVYPEFLKDKRV 226 ++ +D G+K F T+ H + +F D H + E KD+ + Sbjct: 327 DLEIDQGVKMFWTDKNHDELVVFSHDGHYLTIEVTKDQPI 366
>SAS6_DROME (Q9VAC8) Spindle assembly abnormal protein 6 homolog| Length = 472 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 40 KARACTQDWQDIKLLGQTANLYKH 111 KAR CT Q+ KL G AN+ KH Sbjct: 290 KARVCTLKEQNDKLHGDVANIRKH 313
>DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1475 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 156 CTSSVMNAFIPWSRLMFVQICCLS*QFDVLPILCTCSGFCPV 31 CT + S LMF+ +C +PILC +G+C V Sbjct: 551 CTYLEGYDYFSGSELMFIYVCVF---LGFVPILCAGAGYCVV 589 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,929,164 Number of Sequences: 219361 Number of extensions: 826157 Number of successful extensions: 1664 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1624 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1664 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)