ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrin... 34 0.075
2SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 3.1
3RS13_EHRRW (Q5HAU3) 30S ribosomal protein S13 28 4.1
4RS13_EHRRG (Q5FFR9) 30S ribosomal protein S13 28 4.1
5YCE5_YEAST (P25574) Hypothetical 87.2 kDa protein in APA1/DTP-PD... 28 4.1
6SAS6_DROME (Q9VAC8) Spindle assembly abnormal protein 6 homolog 28 7.0
7DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-) 28 7.0

>TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrinsic protein|
           1.2) (OsTIP1.2)
          Length = 252

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = -1

Query: 382 FIGQRPHEQLPTAEY 338
           FIGQRPH+QLPTA+Y
Sbjct: 238 FIGQRPHDQLPTADY 252



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>SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 955

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = +2

Query: 110 INLDHGIKAFITEDVHQDKRLFLTDSHTV-----YPEF---LKDKRVTMKLNWL 247
           + L H I  FITE + Q  +L    S        +PE+   L DK++ +++NW+
Sbjct: 747 LKLAHPIMPFITETIWQRIKLIQNISEKTIMLQDFPEYNHKLFDKKILVQMNWM 800



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>RS13_EHRRW (Q5HAU3) 30S ribosomal protein S13|
          Length = 123

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 95  QICTNINLDHGIKAF-ITEDVHQDKRLFLTDSHTVYPEFLKDKRVTMKLNWLTD 253
           +IC + N+DH I+   +++D     R F+ +++ V  +  K+  V+M + +LTD
Sbjct: 32  KICESCNIDHNIRVVNLSDDEIIRIRNFIRENYVVEGDLRKE--VSMNIKFLTD 83



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>RS13_EHRRG (Q5FFR9) 30S ribosomal protein S13|
          Length = 123

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 95  QICTNINLDHGIKAF-ITEDVHQDKRLFLTDSHTVYPEFLKDKRVTMKLNWLTD 253
           +IC + N+DH I+   +++D     R F+ +++ V  +  K+  V+M + +LTD
Sbjct: 32  KICESCNIDHNIRVVNLSDDEIIRIRNFIRENYVVEGDLRKE--VSMNIKFLTD 83



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>YCE5_YEAST (P25574) Hypothetical 87.2 kDa protein in APA1/DTP-PDI1 intergenic|
           region
          Length = 760

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 107 NINLDHGIKAFITEDVHQDKRLFLTDSHTVYPEFLKDKRV 226
           ++ +D G+K F T+  H +  +F  D H +  E  KD+ +
Sbjct: 327 DLEIDQGVKMFWTDKNHDELVVFSHDGHYLTIEVTKDQPI 366



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>SAS6_DROME (Q9VAC8) Spindle assembly abnormal protein 6 homolog|
          Length = 472

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 40  KARACTQDWQDIKLLGQTANLYKH 111
           KAR CT   Q+ KL G  AN+ KH
Sbjct: 290 KARVCTLKEQNDKLHGDVANIRKH 313



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>DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-)|
          Length = 1475

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 156 CTSSVMNAFIPWSRLMFVQICCLS*QFDVLPILCTCSGFCPV 31
           CT      +   S LMF+ +C        +PILC  +G+C V
Sbjct: 551 CTYLEGYDYFSGSELMFIYVCVF---LGFVPILCAGAGYCVV 589


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,929,164
Number of Sequences: 219361
Number of extensions: 826157
Number of successful extensions: 1664
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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