ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189497.1| Oryza sativa (japonica cultivar-group), predic... 74 4e-10
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
4dbj|AK111768.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
5dbj|AK111747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
6dbj|AB114829.1| Oryza sativa (japonica cultivar-group) OsTIP1 mR... 74 4e-10
7gb|U92651.2|BOU92651 Brassica oleracea var. botrytis tonoplast i... 46 0.083
8emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 44 0.33
9gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete se... 44 0.33
10gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intr... 44 0.33
11gb|AC146049.4| Pan troglodytes BAC clone RP43-72L7 from chromoso... 42 1.3
12dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
13ref|XM_470213.1| Oryza sativa (japonica cultivar-group), predic... 40 5.1
14gb|AC168309.2| Mus musculus chromosome 1, clone wi1-2866I16, com... 40 5.1
15gb|AC145376.3| Pan troglodytes BAC clone RP43-59A12 from 7, comp... 40 5.1
16gb|AC102374.7| Mus musculus chromosome 1, clone RP23-278G2, comp... 40 5.1
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.1
18gb|AF521135.1| Kandelia candel tonoplast intrinsic protein (TIP)... 40 5.1
19emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chr... 40 5.1
20gb|AC090498.4| Homo sapiens chromosome 7 clone RP11-84E17, compl... 40 5.1
21gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Can... 40 5.1
22emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein 40 5.1
23emb|AJ242805.1|SST242805 Sporobolus stapfianus mRNA for putative... 40 5.1
24emb|AL954726.31| Zebrafish DNA sequence from clone CH211-274A9 i... 40 5.1
25gb|AC099674.2| Homo sapiens chromosome 1 clone RP11-143H12, comp... 40 5.1
26gb|AC096922.2| Homo sapiens chromosome 3 clone RP11-436J20, comp... 40 5.1
27gb|AC104837.2| Homo sapiens chromosome 1 clone RP4-641G12, compl... 40 5.1
28gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 40 5.1
29gb|AC158335.1| Homo sapiens chromosome 3 clone WI2-3777M4, compl... 40 5.1
30dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
31dbj|AB206104.1| Mimosa pudica tip1;1 mRNA for tonoplast intrinsi... 40 5.1
32dbj|D25534.1|RICYK333 Oryza sativa yk333 mRNA for gamma-Tip, com... 40 5.1
33emb|BX469934.5| Zebrafish DNA sequence from clone CH211-209P5, c... 40 5.1
34dbj|AK110727.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
35gb|AC009999.2|T20M3 Sequence of BAC T20M3 from Arabidopsis thali... 40 5.1
36dbj|AK104123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
37dbj|AK068986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
38dbj|AK060994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
39dbj|AK059438.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
40dbj|AK058322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
41emb|BX005001.6| Zebrafish DNA sequence from clone DKEY-202E22 in... 40 5.1 
>ref|NM_189497.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 759

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 335 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 383
           |||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 759 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 711
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                                 
Query: 335      tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 383
                |||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 43108668 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 43108716



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 276     ttctcaatctctcatggcgat 296
               |||||||||||||||||||||
Sbjct: 3810439 ttctcaatctctcatggcgat 3810419
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>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0459B04
          Length = 142475

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                               
Query: 335    tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 383
              |||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 105697 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 105745
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>dbj|AK111768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066H10, full
           insert sequence
          Length = 1346

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 335 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 383
           |||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 783 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 735
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>dbj|AK111747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050B20, full
           insert sequence
          Length = 1149

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 335 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 383
           |||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 832 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 784
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>dbj|AB114829.1| Oryza sativa (japonica cultivar-group) OsTIP1 mRNA for tonoplast
           intrinsic protein, complete cds
          Length = 970

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                            
Query: 335 tcagtactcggcggtggggagctgctcgtgcgggcgctggccgatgaag 383
           |||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 769 tcagtagtcggcggtgggcagctggtcgtgcgggcgctggccgatgaag 721
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>gb|U92651.2|BOU92651 Brassica oleracea var. botrytis tonoplast intrinsic protein
           bobTIP26-1 mRNA, complete cds
          Length = 942

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 334 ttcagtactcggcggtggggagctgctcgtg 364
           ||||||| ||||||||||||||||| |||||
Sbjct: 793 ttcagtagtcggcggtggggagctgttcgtg 763
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>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
              novel gene, the 5' end of the TCF8 gene for transcription
              factor 8 (represses interleukin 2 expression)
              (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
              pseudogene similar to part of serine palmitoyltransferase,
              long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1,
              SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 186    cacacacagtttaccctgaatt 207
              ||||||||||||||||||||||
Sbjct: 184855 cacacacagtttaccctgaatt 184834
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>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence
          Length = 198084

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 186   cacacacagtttaccctgaatt 207
             ||||||||||||||||||||||
Sbjct: 67269 cacacacagtttaccctgaatt 67248
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>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA,
           complete cds
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 335 tcagtactcggcggtggggagctgctcgtg 364
           |||||| |||| ||||||||||||||||||
Sbjct: 847 tcagtagtcggtggtggggagctgctcgtg 818
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>gb|AC146049.4| Pan troglodytes BAC clone RP43-72L7 from chromosome 7, complete
             sequence
          Length = 154822

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 123   atggaataaaagcattcataactga 147
             ||||||||||||||| |||||||||
Sbjct: 48438 atggaataaaagcatacataactga 48462
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>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0089K24
          Length = 154137

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 276   ttctcaatctctcatggcgat 296
             |||||||||||||||||||||
Sbjct: 83981 ttctcaatctctcatggcgat 83961
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>ref|XM_470213.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 751 agtagtcggtggtggggagctgctcgtg 724
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>gb|AC168309.2| Mus musculus chromosome 1, clone wi1-2866I16, complete sequence
          Length = 40737

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 251  gatgacacgatgacacttgcttgatttc 278
            ||||||| ||||||| ||||||||||||
Sbjct: 2691 gatgacatgatgacaattgcttgatttc 2664
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>gb|AC145376.3| Pan troglodytes BAC clone RP43-59A12 from 7, complete sequence
          Length = 221727

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    gatgacacgatgacacttgc 270
              ||||||||||||||||||||
Sbjct: 108005 gatgacacgatgacacttgc 107986
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>gb|AC102374.7| Mus musculus chromosome 1, clone RP23-278G2, complete sequence
          Length = 170448

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 251   gatgacacgatgacacttgcttgatttc 278
             ||||||| ||||||| ||||||||||||
Sbjct: 25899 gatgacatgatgacaattgcttgatttc 25926
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 337     agtactcggcggtggggagctgctcgtg 364
               |||| |||| ||||||||||||||||||
Sbjct: 2544731 agtagtcggtggtggggagctgctcgtg 2544758
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>gb|AF521135.1| Kandelia candel tonoplast intrinsic protein (TIP) mRNA, complete
           cds
          Length = 1099

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 gcggtggggagctgctcgtg 364
           ||||||||||||||||||||
Sbjct: 847 gcggtggggagctgctcgtg 828
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>emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chromosome 1 Contains a
             ribosomal protein S15 (RPS15) pseudogene, three novel
             genes (LOC388753), the 3' end of the TARBP1 gene for TAR
             (HIV) RNA binding protein 1 and a CpG island, complete
             sequence
          Length = 92628

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 162   acaagagattattcctgactgact 185
             ||||||| ||||||||||||||||
Sbjct: 68131 acaagagcttattcctgactgact 68108
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>gb|AC090498.4| Homo sapiens chromosome 7 clone RP11-84E17, complete sequence
          Length = 188036

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   gatgacacgatgacacttgc 270
             ||||||||||||||||||||
Sbjct: 67930 gatgacacgatgacacttgc 67911
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>gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109471

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   actgatgacacgatgacact 267
             ||||||||||||||||||||
Sbjct: 67496 actgatgacacgatgacact 67515
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>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein
          Length = 1020

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 814 agtagtcggtggtggggagctgctcgtg 787
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>emb|AJ242805.1|SST242805 Sporobolus stapfianus mRNA for putative gamma tonoplast intrinsic
           protein (TIP)
          Length = 1146

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 833 agtagtcggtggtggggagctgctcgtg 806
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>emb|AL954726.31| Zebrafish DNA sequence from clone CH211-274A9 in linkage group 23,
              complete sequence
          Length = 164507

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     tttgtacaaacattaatctt 118
              ||||||||||||||||||||
Sbjct: 115044 tttgtacaaacattaatctt 115063
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>gb|AC099674.2| Homo sapiens chromosome 1 clone RP11-143H12, complete sequence
          Length = 181928

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  atggaataaaagcattcata 142
            ||||||||||||||||||||
Sbjct: 1131 atggaataaaagcattcata 1150
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>gb|AC096922.2| Homo sapiens chromosome 3 clone RP11-436J20, complete sequence
          Length = 218652

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   ttgaccatggaataaaagca 136
             ||||||||||||||||||||
Sbjct: 58459 ttgaccatggaataaaagca 58440
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>gb|AC104837.2| Homo sapiens chromosome 1 clone RP4-641G12, complete sequence
          Length = 151265

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    atggaataaaagcattcata 142
              ||||||||||||||||||||
Sbjct: 112972 atggaataaaagcattcata 112991
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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 337    agtactcggcggtggggagctgctcgtg 364
              |||| |||| ||||||||||||||||||
Sbjct: 125363 agtagtcggtggtggggagctgctcgtg 125336
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>gb|AC158335.1| Homo sapiens chromosome 3 clone WI2-3777M4, complete sequence
          Length = 43533

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   ttgaccatggaataaaagca 136
             ||||||||||||||||||||
Sbjct: 22694 ttgaccatggaataaaagca 22675
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 337     agtactcggcggtggggagctgctcgtg 364
               |||| |||| ||||||||||||||||||
Sbjct: 2544841 agtagtcggtggtggggagctgctcgtg 2544868
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>dbj|AB206104.1| Mimosa pudica tip1;1 mRNA for tonoplast intrinsic protein 1;1,
           complete cds
          Length = 1067

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 824 agtaatcggtggtggggagctgctcgtg 797
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>dbj|D25534.1|RICYK333 Oryza sativa yk333 mRNA for gamma-Tip, complete cds
          Length = 1080

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 829 agtagtcggtggtggggagctgctcgtg 802
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>emb|BX469934.5| Zebrafish DNA sequence from clone CH211-209P5, complete sequence
          Length = 225586

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gaatgcttgtcataaatatt 23
              ||||||||||||||||||||
Sbjct: 181013 gaatgcttgtcataaatatt 180994
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>dbj|AK110727.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E06, full
           insert sequence
          Length = 1024

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 182 agtagtcggtggtggggagctgctcgtg 209
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>gb|AC009999.2|T20M3 Sequence of BAC T20M3 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 79554

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  gtacaaacattaatcttgac 121
            ||||||||||||||||||||
Sbjct: 5058 gtacaaacattaatcttgac 5039
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>dbj|AK104123.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C12, full
           insert sequence
          Length = 1034

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 838 agtagtcggtggtggggagctgctcgtg 811
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>dbj|AK068986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003E16, full
           insert sequence
          Length = 1082

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 840 agtagtcggtggtggggagctgctcgtg 813
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>dbj|AK060994.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E02, full
           insert sequence
          Length = 870

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 674 agtagtcggtggtggggagctgctcgtg 647
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>dbj|AK059438.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G11, full
           insert sequence
          Length = 551

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 364 agtagtcggtggtggggagctgctcgtg 337
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>dbj|AK058322.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B06, full
           insert sequence
          Length = 1055

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 337 agtactcggcggtggggagctgctcgtg 364
           |||| |||| ||||||||||||||||||
Sbjct: 836 agtagtcggtggtggggagctgctcgtg 809
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>emb|BX005001.6| Zebrafish DNA sequence from clone DKEY-202E22 in linkage group 21,
             complete sequence
          Length = 159375

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aataaaagcattcataactg 146
             ||||||||||||||||||||
Sbjct: 53977 aataaaagcattcataactg 53996


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,742,565
Number of Sequences: 3902068
Number of extensions: 3742565
Number of successful extensions: 64225
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64095
Number of HSP's gapped (non-prelim): 130
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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