ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IL16_MACMU (O62675) Interleukin-16 precursor (IL-16) (Lymphocyte... 31 0.71
2IL16_MACFA (O62676) Interleukin-16 precursor (IL-16) (Lymphocyte... 31 0.71
3IL16_CERAE (O62674) Interleukin-16 precursor (IL-16) (Lymphocyte... 31 0.71
4ALFC_PEA (Q01516) Fructose-bisphosphate aldolase 1, chloroplast ... 29 2.7

>IL16_MACMU (O62675) Interleukin-16 precursor (IL-16) (Lymphocyte|
           chemoattractant factor) (LCF)
          Length = 630

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 153 HPNNN*ENKTPQNDVHLIYKSSRRRLISRGNPSGTCPSWPRRS 281
           HP+ N       N    +YKS+ R  + +G P    P+W R+S
Sbjct: 52  HPDGNPPKLDTANGTPKVYKSADRSTVKKGPPVAPKPAWFRQS 94



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>IL16_MACFA (O62676) Interleukin-16 precursor (IL-16) (Lymphocyte|
           chemoattractant factor) (LCF)
          Length = 630

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 153 HPNNN*ENKTPQNDVHLIYKSSRRRLISRGNPSGTCPSWPRRS 281
           HP+ N       N    +YKS+ R  + +G P    P+W R+S
Sbjct: 52  HPDGNPPKLDTANGTPKVYKSADRSTVKKGPPVAPKPAWFRQS 94



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>IL16_CERAE (O62674) Interleukin-16 precursor (IL-16) (Lymphocyte|
           chemoattractant factor) (LCF)
          Length = 631

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 153 HPNNN*ENKTPQNDVHLIYKSSRRRLISRGNPSGTCPSWPRRS 281
           HP+ N       N    +YKS+ R  + +G P    P+W R+S
Sbjct: 52  HPDGNPPKLDTANGTPKVYKSADRSTVKKGPPVAPKPAWFRQS 94



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>ALFC_PEA (Q01516) Fructose-bisphosphate aldolase 1, chloroplast precursor|
           (EC 4.1.2.13) (Fragment)
          Length = 356

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 285 GESDEAKKGMFQKGYPY 235
           GES+EAKK +F KGY Y
Sbjct: 340 GESEEAKKELFVKGYSY 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,854,113
Number of Sequences: 219361
Number of extensions: 641994
Number of successful extensions: 1159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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