ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184115.2| Oryza sativa (japonica cultivar-group), mRNA 72 1e-09
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
3dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
4dbj|AK099387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
5dbj|AK059097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
6gb|BT017456.1| Zea mays clone EL01N0407B10.c mRNA sequence 66 7e-08
7gb|AY106811.1| Zea mays PCO109530 mRNA sequence 64 3e-07
8gb|AY342279.1| Amblyomma sp. USNTC 118150(X) 12S ribosomal RNA g... 44 0.24
9gb|BC054998.1| Xenopus laevis hypothetical protein LOC398677, mR... 42 0.94
10ref|XM_542921.2| PREDICTED: Canis familiaris similar to ProSAPiP... 42 0.94
11ref|XM_855813.1| PREDICTED: Canis familiaris similar to ProSAPiP... 42 0.94
12gb|AC008040.7| Homo sapiens 3 BAC RP11-379K17 (Roswell Park Canc... 42 0.94
13emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 o... 42 0.94
14gb|AC022089.7| Homo sapiens chromosome 5 clone CTB-125N5, comple... 42 0.94
15gb|AC010428.7| Homo sapiens chromosome 5 clone CTD-2199C13, comp... 42 0.94
16gb|AC011403.4|AC011403 Homo sapiens chromosome 5 clone CTB-3P13,... 42 0.94
17gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, compl... 42 0.94
18gb|AC078795.19| Homo sapiens 3 BAC RP11-362K14 (Roswell Park Can... 42 0.94
19emb|AL954387.17| Zebrafish DNA sequence from clone CH211-288B20 ... 42 0.94
20emb|Z49913.1|CEZK938 Caenorhabditis elegans Cosmid ZK938, comple... 42 0.94
21gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, comp... 42 0.94
22emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chr... 42 0.94
23emb|AL591970.10| Mouse DNA sequence from clone RP23-190L21 on ch... 42 0.94
24gb|AC152394.11| Mus musculus chromosome 15, clone RP23-100K19, c... 40 3.7
25gb|AC102000.14| Mus musculus chromosome 15, clone RP24-467P24, c... 40 3.7
26emb|Z78063.1|CEF45D3 Caenorhabditis elegans Cosmid F45D3, comple... 40 3.7
27ref|XM_670365.1| Plasmodium berghei strain ANKA hypothetical pro... 40 3.7
28emb|AL590009.10| Human DNA sequence from clone RP11-181P4 on chr... 40 3.7
29emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BA... 40 3.7
30emb|CR855273.7| Zebrafish DNA sequence from clone DKEYP-34E1 in ... 40 3.7
31emb|BX539315.5| Zebrafish DNA sequence from clone DKEY-245E14, c... 40 3.7
32emb|BX072577.14| Zebrafish DNA sequence from clone CH211-151G22 ... 40 3.7
33gb|AC013719.8| Homo sapiens BAC clone RP11-270E5 from 2, complet... 40 3.7
34gb|AC007458.14| Homo sapiens 12 BAC RP11-444B24 (Roswell Park Ca... 40 3.7
35gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana... 40 3.7
36emb|AL928946.17| Zebrafish DNA sequence from clone CH211-265D20 ... 40 3.7
37emb|BX927393.12| Zebrafish DNA sequence from clone CH211-231B2 i... 40 3.7
38emb|BX000429.7| Zebrafish DNA sequence from clone DKEY-77G18, co... 40 3.7
39gb|AC147448.2| Gallus gallus BAC clone CH261-2D18 from chromosom... 40 3.7
40gb|AC147645.3| Gallus gallus BAC clone CH261-121C23 from chromos... 40 3.7
41emb|AL954347.10| Mouse DNA sequence from clone RP23-438I5 on chr... 40 3.7
42emb|AL732463.7| Mouse DNA sequence from clone RP23-216N18 on chr... 40 3.7 
>ref|NM_184115.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1421

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 230  catcagtaggggtaacccttctggaacatgcccttcttggcctcgtcgctctcgcc 285
            |||||||| | ||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1234 catcagtaagtgtagcccttctggaacattcccttcttggcctcatcgctctcgcc 1179
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                       
Query: 230     catcagtaggggtaacccttctggaacatgcccttcttggcctcgtcgctctcgcc 285
               |||||||| | ||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1018248 catcagtaagtgtagcccttctggaacattcccttcttggcctcatcgctctcgcc 1018193
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>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0494A10
          Length = 145576

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                     
Query: 230   catcagtaggggtaacccttctggaacatgcccttcttggcctcgtcgctctcgcc 285
             |||||||| | ||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 55916 catcagtaagtgtagcccttctggaacattcccttcttggcctcatcgctctcgcc 55861
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>dbj|AK099387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075H15, full
            insert sequence
          Length = 1477

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 230  catcagtaggggtaacccttctggaacatgcccttcttggcctcgtcgctctcgcc 285
            |||||||| | ||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1233 catcagtaagtgtagcccttctggaacattcccttcttggcctcatcgctctcgcc 1178
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>dbj|AK059097.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C06, full
            insert sequence
          Length = 1421

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 230  catcagtaggggtaacccttctggaacatgcccttcttggcctcgtcgctctcgcc 285
            |||||||| | ||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1234 catcagtaagtgtagcccttctggaacattcccttcttggcctcatcgctctcgcc 1179
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>gb|BT017456.1| Zea mays clone EL01N0407B10.c mRNA sequence
          Length = 859

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                            
Query: 234 agtaggggtaacccttctggaacatgcccttcttggcctcgtcgctctc 282
           |||||| ||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 737 agtaggtgtagcccttctggaacatgcctttcttcgcctcgtcgctctc 689
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>gb|AY106811.1| Zea mays PCO109530 mRNA sequence
          Length = 1545

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                
Query: 234  agtaggggtaacccttctggaacatgcccttcttggcctcgtcgctctcgcc 285
            |||||| ||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct: 1242 agtaggtgtagcccttctggaacatgcctttcttggcatcatcgctctcgcc 1191
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>gb|AY342279.1| Amblyomma sp. USNTC 118150(X) 12S ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 316

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 159 aataataattaagaaaacaaaa 180
           ||||||||||||||||||||||
Sbjct: 4   aataataattaagaaaacaaaa 25
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>gb|BC054998.1| Xenopus laevis hypothetical protein LOC398677, mRNA (cDNA clone
           IMAGE:6873867), partial cds
          Length = 2010

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 159 aataataattaagaaaacaaaaccc 183
           |||||||||||| ||||||||||||
Sbjct: 834 aataataattaaaaaaacaaaaccc 810
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>ref|XM_542921.2| PREDICTED: Canis familiaris similar to ProSAPiP1 protein, transcript
            variant 1 (LOC485798), mRNA
          Length = 2022

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  tcttggcctcgtcgctctcgc 284
            |||||||||||||||||||||
Sbjct: 1627 tcttggcctcgtcgctctcgc 1607
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>ref|XM_855813.1| PREDICTED: Canis familiaris similar to ProSAPiP1 protein, transcript
            variant 2 (LOC485798), mRNA
          Length = 1884

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  tcttggcctcgtcgctctcgc 284
            |||||||||||||||||||||
Sbjct: 1489 tcttggcctcgtcgctctcgc 1469
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>gb|AC008040.7| Homo sapiens 3 BAC RP11-379K17 (Roswell Park Cancer Institue Human BAC
              Library) complete sequence
          Length = 204917

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 104    atacagctaacagtccttggcaccaacac 132
              |||||||||||| |||||| |||||||||
Sbjct: 203379 atacagctaacattccttgtcaccaacac 203407
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>emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 on chromosome 20q12 Contains a
             novel gene, complete sequence
          Length = 125517

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   caataataattaagaaaacaa 178
             |||||||||||||||||||||
Sbjct: 71005 caataataattaagaaaacaa 71025
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>gb|AC022089.7| Homo sapiens chromosome 5 clone CTB-125N5, complete sequence
          Length = 44504

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 47   gaattgtttgttctcataaat 67
            |||||||||||||||||||||
Sbjct: 1544 gaattgtttgttctcataaat 1524
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>gb|AC010428.7| Homo sapiens chromosome 5 clone CTD-2199C13, complete sequence
          Length = 134420

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 47    gaattgtttgttctcataaat 67
             |||||||||||||||||||||
Sbjct: 59479 gaattgtttgttctcataaat 59499
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>gb|AC011403.4|AC011403 Homo sapiens chromosome 5 clone CTB-3P13, complete sequence
          Length = 124552

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    gaattgtttgttctcataaat 67
             |||||||||||||||||||||
Sbjct: 20202 gaattgtttgttctcataaat 20182
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>gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, complete sequence
          Length = 207950

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 63    taaatataacttcaggcaactctaa 87
             ||||||||| |||||||||||||||
Sbjct: 86736 taaatataatttcaggcaactctaa 86760
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>gb|AC078795.19| Homo sapiens 3 BAC RP11-362K14 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 125445

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 104 atacagctaacagtccttggcaccaacac 132
           |||||||||||| |||||| |||||||||
Sbjct: 461 atacagctaacattccttgtcaccaacac 489
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>emb|AL954387.17| Zebrafish DNA sequence from clone CH211-288B20 in linkage group 18,
             complete sequence
          Length = 125744

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   aataataattaagaaaacaaa 179
             |||||||||||||||||||||
Sbjct: 76661 aataataattaagaaaacaaa 76681
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>emb|Z49913.1|CEZK938 Caenorhabditis elegans Cosmid ZK938, complete sequence
          Length = 21971

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 52   gtttgttctcataaatataacttca 76
            ||||||| |||||||||||||||||
Sbjct: 8664 gtttgttttcataaatataacttca 8640
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>gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, complete sequence
          Length = 206640

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 159    aataataattaagaaaacaaaaccc 183
              ||||||||||||||||| |||||||
Sbjct: 115512 aataataattaagaaaaaaaaaccc 115488
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>emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chromosome 4, complete
             sequence
          Length = 187392

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 155   ccccaataataattaagaaaacaaaaccc 183
             |||||||||||||||| |||| |||||||
Sbjct: 14419 ccccaataataattaaaaaaaaaaaaccc 14391
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>emb|AL591970.10| Mouse DNA sequence from clone RP23-190L21 on chromosome 2, complete
              sequence
          Length = 165908

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    caataataattaagaaaacaa 178
              |||||||||||||||||||||
Sbjct: 118861 caataataattaagaaaacaa 118881
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>gb|AC152394.11| Mus musculus chromosome 15, clone RP23-100K19, complete sequence
          Length = 203260

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    aataattaagaaaacaaaac 181
              ||||||||||||||||||||
Sbjct: 170491 aataattaagaaaacaaaac 170510
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>gb|AC102000.14| Mus musculus chromosome 15, clone RP24-467P24, complete sequence
          Length = 171400

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   aataattaagaaaacaaaac 181
             ||||||||||||||||||||
Sbjct: 25415 aataattaagaaaacaaaac 25434
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>emb|Z78063.1|CEF45D3 Caenorhabditis elegans Cosmid F45D3, complete sequence
          Length = 37434

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   taataattaagaaaacaaaa 180
             ||||||||||||||||||||
Sbjct: 23192 taataattaagaaaacaaaa 23211
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>ref|XM_670365.1| Plasmodium berghei strain ANKA hypothetical protein (PB106713.00.0)
           partial mRNA
          Length = 323

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 aattaagaaaacaaaacccc 184
           ||||||||||||||||||||
Sbjct: 236 aattaagaaaacaaaacccc 255
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>emb|AL590009.10| Human DNA sequence from clone RP11-181P4 on chromosome 6 Contains the
             WASF1 gene for WAS protein family member 1 and part of the
             FLJ31482 gene, complete sequence
          Length = 153046

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   ataattaagaaaacaaaacc 182
             ||||||||||||||||||||
Sbjct: 20936 ataattaagaaaacaaaacc 20917
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>emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6
          Length = 93443

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   ataataattaagaaaacaaa 179
             ||||||||||||||||||||
Sbjct: 22475 ataataattaagaaaacaaa 22494
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>emb|CR855273.7| Zebrafish DNA sequence from clone DKEYP-34E1 in linkage group 24,
              complete sequence
          Length = 161081

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ttgtttgttctcataaatat 69
              ||||||||||||||||||||
Sbjct: 118593 ttgtttgttctcataaatat 118574
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>emb|BX539315.5| Zebrafish DNA sequence from clone DKEY-245E14, complete sequence
          Length = 172139

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   caataataattaagaaaacaaaac 181
             |||||||||||| |||||||||||
Sbjct: 98046 caataataattaggaaaacaaaac 98023
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>emb|BX072577.14| Zebrafish DNA sequence from clone CH211-151G22 in linkage group 21,
              complete sequence
          Length = 160341

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    taataattaagaaaacaaaa 180
              ||||||||||||||||||||
Sbjct: 121025 taataattaagaaaacaaaa 121006
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>gb|AC013719.8| Homo sapiens BAC clone RP11-270E5 from 2, complete sequence
          Length = 152996

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    ccccaataataattaagaaa 174
              ||||||||||||||||||||
Sbjct: 128912 ccccaataataattaagaaa 128931
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>gb|AC007458.14| Homo sapiens 12 BAC RP11-444B24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190961

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     taacttcaggcaactctaaa 88
              ||||||||||||||||||||
Sbjct: 113151 taacttcaggcaactctaaa 113170
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>gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I,
             complete sequence
          Length = 114738

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   aataataattaagaaaacaa 178
             ||||||||||||||||||||
Sbjct: 49309 aataataattaagaaaacaa 49328
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>emb|AL928946.17| Zebrafish DNA sequence from clone CH211-265D20 in linkage group 20,
             complete sequence
          Length = 157379

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   taataattaagaaaacaaaa 180
             ||||||||||||||||||||
Sbjct: 28928 taataattaagaaaacaaaa 28947
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>emb|BX927393.12| Zebrafish DNA sequence from clone CH211-231B2 in linkage group 1,
              complete sequence
          Length = 152923

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 158    caataataattaagaaaacaaaac 181
              |||||||||||| |||||||||||
Sbjct: 136831 caataataattaggaaaacaaaac 136854
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>emb|BX000429.7| Zebrafish DNA sequence from clone DKEY-77G18, complete sequence
          Length = 58683

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    tttgttctcataaatataacttca 76
             |||||| |||||||||||||||||
Sbjct: 25761 tttgttttcataaatataacttca 25738
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>gb|AC147448.2| Gallus gallus BAC clone CH261-2D18 from chromosome unknown, complete
              sequence
          Length = 216522

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    gaaaacaaaaccccgcaaaa 190
              ||||||||||||||||||||
Sbjct: 194016 gaaaacaaaaccccgcaaaa 194035
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>gb|AC147645.3| Gallus gallus BAC clone CH261-121C23 from chromosome unknown,
            complete sequence
          Length = 158903

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  aataataattaagaaaacaaaacc 182
            ||||||||||||||||| ||||||
Sbjct: 4241 aataataattaagaaaaaaaaacc 4218
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>emb|AL954347.10| Mouse DNA sequence from clone RP23-438I5 on chromosome 2, complete
             sequence
          Length = 123289

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   aattaagaaaacaaaacccc 184
             ||||||||||||||||||||
Sbjct: 69151 aattaagaaaacaaaacccc 69132
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>emb|AL732463.7| Mouse DNA sequence from clone RP23-216N18 on chromosome X, complete
             sequence
          Length = 158239

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   tctggaacatgcccttcttg 268
             ||||||||||||||||||||
Sbjct: 11555 tctggaacatgcccttcttg 11574


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,497,702
Number of Sequences: 3902068
Number of extensions: 3497702
Number of successful extensions: 76847
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76755
Number of HSP's gapped (non-prelim): 92
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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