ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46f03 |
|---|---|
| Clone Library Name | barley_pub |
>PDIA6_PONPY (Q5R6T1) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| Length = 440 Score = 79.0 bits (193), Expect = 6e-15 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 2/93 (2%) Frame = -2 Query: 466 VGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQ 293 +G+GG+GYPAM A+N +K +A L+ +F I EF++E G P+ G PT+V+ Sbjct: 349 LGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVE 408 Query: 292 SEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 194 EPWDG+DGE+ ED+ L ++ D DEL Sbjct: 409 REPWDGRDGELPVEDDIDLSDVELDDLG-KDEL 440
>PDIA6_HUMAN (Q15084) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) (Thioredoxin domain-containing protein 7) Length = 440 Score = 79.0 bits (193), Expect = 6e-15 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 2/93 (2%) Frame = -2 Query: 466 VGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQ 293 +G+GG+GYPAM A+N +K +A L+ +F I EF++E G P+ G PT+V+ Sbjct: 349 LGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVE 408 Query: 292 SEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 194 EPWDG+DGE+ ED+ L ++ D DEL Sbjct: 409 REPWDGRDGELPVEDDIDLSDVELDDLG-KDEL 440
>PDIA6_MOUSE (Q922R8) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Thioredoxin domain-containing protein 7) Length = 440 Score = 77.4 bits (189), Expect = 2e-14 Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 2/93 (2%) Frame = -2 Query: 466 VGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQ 293 +G+GG+GYPAM A+N +K +A L+ +F I EF++E G P+ G PT+ Sbjct: 349 LGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPTITP 408 Query: 292 SEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 194 EPWDGKDGE+ ED+ L ++ D DEL Sbjct: 409 REPWDGKDGELPVEDDIDLSDVELD-DLEKDEL 440
>PDIA6_RAT (Q63081) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) (Calcium-binding protein 1) (CaBP1) (Thioredoxin domain-containing protein 7) Length = 440 Score = 75.5 bits (184), Expect = 6e-14 Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Frame = -2 Query: 466 VGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQ 293 +G+GG+GYPAM A+N +K +A L+ +F I EF++E G P+ G P + Sbjct: 349 LGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITP 408 Query: 292 SEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 194 EPWDGKDGE+ ED+ L ++ D DEL Sbjct: 409 REPWDGKDGELPVEDDIDLSDVELD-DLEKDEL 440
>PDIA6_MESAU (P38660) Protein disulfide-isomerase A6 precursor (EC 5.3.4.1)| (Protein disulfide isomerase P5) Length = 439 Score = 72.8 bits (177), Expect = 4e-13 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Frame = -2 Query: 466 VGVGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEGA--PTVVQ 293 +G+GG+GYPAM +N +K +A L+ +F I EF++E G P+ G P + Sbjct: 348 LGIGGFGYPAMARINARKMKFALLKGSFSEQGINEFLRELSFGRASTAPVGGGSFPAITA 407 Query: 292 SEPWDGKDGEVIEEDEFSLEELMADSSAPNDEL 194 EPWDG+DGE+ ED+ L ++ D DEL Sbjct: 408 REPWDGRDGELPVEDDIDLSDVELD-DLEKDEL 439
>PDIA6_CAEEL (Q11067) Probable protein disulfide-isomerase A6 precursor (EC| 5.3.4.1) Length = 440 Score = 71.6 bits (174), Expect = 9e-13 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 2/85 (2%) Frame = -2 Query: 460 VGGYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEA--GRGGKGNLPLEGAPTVVQSE 287 VGG+GYPAM ALN +K YA L+ +F I EF+++ G+G +L +G P + ++E Sbjct: 354 VGGFGYPAMTALNFRKNKYAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRGDGFPKIQKTE 413 Query: 286 PWDGKDGEVIEEDEFSLEELMADSS 212 WDGKDG + ED+ L ++ D + Sbjct: 414 KWDGKDGALPAEDDIDLSDIDLDKT 438
>MUTS_DESVH (P61666) DNA mismatch repair protein mutS| Length = 905 Score = 33.9 bits (76), Expect = 0.22 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -2 Query: 454 GYGYPAMVALNVKKGAYAPLRSAFELAEITEFVKEA-GRGGKGNLPLEGAPTVVQS 290 G PAM L + P RS F+L TE V A G G+L LEG P +V++ Sbjct: 183 GVDTPAMATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRA 238
>YAI1_ENCCU (Q8SU96) Hypothetical protein ECU10_1810| Length = 621 Score = 32.3 bits (72), Expect = 0.63 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -2 Query: 397 LRSAFELAEITEFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEED---EFSLEEL 227 LR+A EL + E K G+G K +G+ V + KD E +EE E SLEE+ Sbjct: 345 LRNALELLRMEEKEKSKGKGKKKKGGKKGSGEVTAKMEEEKKDSEEVEESAEAEVSLEEM 404
>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)| Length = 174 Score = 31.2 bits (69), Expect = 1.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQ 360 P G P GRPP++G P + PP Q Sbjct: 100 PPGKPEGRPPQQGGPGKPERPPPQ 123
>PURT_ECOLI (P33221) Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)| (GART 2) (GAR transformylase 2) (5'-phosphoribosylglycinamide transformylase 2) (Formate-dependent GAR transformylase) Length = 391 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -2 Query: 460 VGGYGYPAMV--ALNVKKGAYAPLRSAFELAEITEFVKEAGRGGKGNLPLEG 311 V GYP +V ++ +RSA +LA+ ++ ++ GR G G + +EG Sbjct: 144 VADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEG 195
>PUR7_FUSNN (Q8REV1) Phosphoribosylaminoimidazole-succinocarboxamide synthase| (EC 6.3.2.6) (SAICAR synthetase) Length = 237 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -2 Query: 397 LRSAFELAEIT--EFVKEAGRGGKGNLPLEGAPTVVQSEPWDGKDGEVIEEDEF 242 L+ F+ IT +F E G+ KG + L T WD K GE +++D F Sbjct: 162 LKEKFDNIGITLVDFKIEFGKNSKGEILLADEITPDTCRLWDKKTGEKLDKDRF 215
>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)| Length = 415 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQT 363 P PP+ RPP P R+A PP T Sbjct: 268 PGAPPAARPPASPSPQRQAGPPQAT 292
>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)| Length = 705 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQT 363 P PP+ RPP P R+A PP T Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQAT 564
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 289 PTGPPSGRPPEEGCPFRRALPPSQT 363 P PP+ RPP P R+A PP T Sbjct: 538 PGAPPAARPPASPSPQRQAGPPQAT 562
>PO2F1_XENLA (P16143) POU domain, class 2, transcription factor 1| (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1) (XOct1) Length = 760 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +2 Query: 32 GHPHTLHT-----RAFSHNANIEIKKRHSKKCPVQIVQCTHQNK*SISVPLNATMVRESQ 196 GH H + +A +H+ N++ K + P+Q+VQ + Q ++P MV Q Sbjct: 66 GHLHQVQLAGTSLQAAAHSLNVQTKFKEEPGEPMQVVQPSQQPSLQAAIPQTQLMVAGGQ 125 Query: 197 L 199 + Sbjct: 126 I 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,842,632 Number of Sequences: 219361 Number of extensions: 1323009 Number of successful extensions: 5146 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5129 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
