Clone Information

BLAST Search Result

Clone Name	rbart46f03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY112452.1\| Zea mays CL286_2 mRNA sequence	206	5e-50
2	gb\|AY739290.1\| Zea mays protein disulfide isomerase (PDIL2-3) mR...	206	5e-50
3	dbj\|AK072941.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	176	4e-41
4	dbj\|AK062254.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	1e-38
5	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	107	3e-20
6	dbj\|AP005393.3\| Oryza sativa (japonica cultivar-group) genomic D...	107	3e-20
7	dbj\|AP005559.3\| Oryza sativa (japonica cultivar-group) genomic D...	107	3e-20
8	gb\|AC011382.4\| Homo sapiens chromosome 5 clone CTB-13H5, complet...	44	0.41
9	emb\|BX511005.6\| Zebrafish DNA sequence from clone DKEY-72N1 in l...	42	1.6
10	gb\|AE004686.1\| Pseudomonas aeruginosa PAO1, section 247 of 529 o...	42	1.6
11	gb\|AC156989.3\| Mus musculus chromosome 1, clone RP23-379L2, comp...	42	1.6
12	ref\|XM_483499.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.3
13	gb\|AC110913.13\| Mus musculus chromosome 19, clone RP24-399E19, c...	40	6.3
14	gb\|AC113587.16\| Mus musculus chromosome 15, clone RP24-424I13, c...	40	6.3
15	gb\|AC158606.14\| Mus musculus 10 BAC RP24-456P10 (Roswell Park Ca...	40	6.3
16	ref\|XM_953631.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.3
17	ref\|XM_330307.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.3
18	gb\|AC119218.7\| Mus musculus chromosome 7, clone RP24-200I20, com...	40	6.3
19	gb\|AC131669.3\| Mus musculus BAC clone RP23-307E9 from chromosome...	40	6.3
20	gb\|AC113198.15\| Mus musculus chromosome 14, clone RP23-248E15, c...	40	6.3
21	gb\|AC122250.4\| Mus musculus BAC clone RP23-167A3 from chromosome...	40	6.3
22	emb\|AJ224870.1\|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & n...	40	6.3
23	gb\|AC162304.4\| Mus musculus chromosome 7, clone RP23-350J16, com...	40	6.3
24	gb\|AC114407.24\| Mus musculus chromosome 10, clone RP23-51G1, com...	40	6.3
25	emb\|AL096814.26\|HSDJ139D8 Human DNA sequence from clone RP1-139D...	40	6.3
26	emb\|AL772193.5\| Zebrafish DNA sequence from clone CH211-194C5 in...	40	6.3
27	gb\|AC080066.6\| Homo sapiens BAC clone CTD-2321M19 from 7, comple...	40	6.3
28	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
29	dbj\|AP005529.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
30	dbj\|AP000388.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	6.3
31	emb\|BX470085.6\| Zebrafish DNA sequence from clone DKEY-238K17 in...	40	6.3
32	dbj\|AK119370.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
33	dbj\|AK073978.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
34	tpe\|BN000648.1\| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...	40	6.3
35	emb\|AL355834.4\|CNS05TCN Human chromosome 14 DNA sequence BAC R-9...	40	6.3
36	gb\|AC123724.9\| Mus musculus chromosome 15, clone RP23-432N1, com...	40	6.3
37	emb\|BX005253.10\| Mouse DNA sequence from clone RP23-300D2 on chr...	40	6.3
38	emb\|AL939130.1\|SCO939130 Streptomyces coelicolor A3(2) complete ...	40	6.3
39	emb\|AL135758.32\| Mouse DNA sequence from clone RP21-117J5 on chr...	40	6.3

>gb|AY112452.1| Zea mays CL286_2 mRNA sequence
          Length = 1510

 Score =  206 bits (104), Expect = 5e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                        
Query: 187  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 246
            ||||||||||||| ||||| |  |  ||||||||  |||||||||| ||||| ||||| |
Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315

                                                                        
Query: 247  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 306
            | |||||||| |||||||||||||| ||||||||||| || || |||  ||| || || |
Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255

                                                                        
Query: 307  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 366
            | ||  | | |||||||||||| |||||||| || ||||||||||||||||| |||||| 
Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195

                                                                        
Query: 367  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 426
            |||||||| || ||| |||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135

                                        
Query: 427  gagcgaccatggctggatagccatagcc 454
            |||| |||||||| |||||||| |||||
Sbjct: 1134 gagctaccatggcgggatagccgtagcc 1107

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>gb|AY739290.1| Zea mays protein disulfide isomerase (PDIL2-3) mRNA, complete cds
          Length = 1531

 Score =  206 bits (104), Expect = 5e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                        
Query: 187  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 246
            ||||||||||||| ||||| |  |  ||||||||  |||||||||| ||||| ||||| |
Sbjct: 1374 agaatcacaactcatcgtttgctgaggagctgtcgcccatgagctcgtcgagggagaatt 1315

                                                                        
Query: 247  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 306
            | |||||||| |||||||||||||| ||||||||||| || || |||  ||| || || |
Sbjct: 1314 catcctcctcaatgacctctccatctttgccgtcccacggctcggacgcgactactgtag 1255

                                                                        
Query: 307  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 366
            | ||  | | |||||||||||| |||||||| || ||||||||||||||||| |||||| 
Sbjct: 1254 gtgcatcgttcagaggaaggtttccctttccaccacgccctgcctccttcacgaactcga 1195

                                                                        
Query: 367  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 426
            |||||||| || ||| |||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 1194 tgatttcgtcgcgctggaaggcactacggagtggagcgtatgcacctttcttcacgttga 1135

                                        
Query: 427  gagcgaccatggctggatagccatagcc 454
            |||| |||||||| |||||||| |||||
Sbjct: 1134 gagctaccatggcgggatagccgtagcc 1107

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>dbj|AK072941.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F04, full
            insert sequence
          Length = 1738

 Score =  176 bits (89), Expect = 4e-41
 Identities = 230/277 (83%)
 Strand = Plus / Minus

                                                                        
Query: 187  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 246
            |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 1573 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1514

                                                                        
Query: 247  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 306
            ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 1513 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1454

                                                                        
Query: 307  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 366
            |||  || |||| |||||| || ||||| || ||||||||||| |||||||||||||| |
Sbjct: 1453 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactcag 1394

                                                                        
Query: 367  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 426
            | |||||  | |||| ||| || |||||||| ||||| ||||||||||| ||||||||| 
Sbjct: 1393 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttgt 1334

                                                 
Query: 427  gagcgaccatggctggatagccatagccaccgactcc 463
            |||| ||||| |||||||||||||| ||||| |||||
Sbjct: 1333 gagcaaccatcgctggatagccataaccaccaactcc 1297

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>dbj|AK062254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G06, full
            insert sequence
          Length = 1642

 Score =  168 bits (85), Expect = 1e-38
 Identities = 229/277 (82%)
 Strand = Plus / Minus

                                                                        
Query: 187  agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 246
            |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 1429 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 1370

                                                                        
Query: 247  cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 306
            ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 1369 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 1310

                                                                        
Query: 307  gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactcgg 366
            |||  || |||| |||||| || ||||| || ||||||||||| ||| |||||||||| |
Sbjct: 1309 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccctcacaaactcag 1250

                                                                        
Query: 367  tgatttcggcgagctcgaaggcgctacggagcggagcgtatgcgcctttcttcacgttga 426
            | |||||  | |||| ||| || |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 1249 ttatttcatcaagctggaaagcactacggagtggagcatatgcgccttttttcacgttga 1190

                                                 
Query: 427  gagcgaccatggctggatagccatagccaccgactcc 463
            | || ||||| |||||||||||||| ||||| |||||
Sbjct: 1189 gggcaaccatcgctggatagccataaccaccaactcc 1153

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  107 bits (54), Expect = 3e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                            
Query: 187      agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 246
                |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 16881040 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 16880981

                                                                            
Query: 247      cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 306
                ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 16880980 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 16880921

                                                                          
Query: 307      gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 364
                |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 16880920 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 16880863



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 390      ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 449
                |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 16880755 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 16880696

                              
Query: 450      tagccaccgactcc 463
                || ||||| |||||
Sbjct: 16880695 taaccaccaactcc 16880682

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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score =  107 bits (54), Expect = 3e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 187   agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 246
             |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 10853 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 10794

                                                                         
Query: 247   cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 306
             ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 10793 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 10734

                                                                       
Query: 307   gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 364
             |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 10733 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 10676



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 390   ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 449
             |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 10568 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 10509

                           
Query: 450   tagccaccgactcc 463
             || ||||| |||||
Sbjct: 10508 taaccaccaactcc 10495

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>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1163_C07
          Length = 107121

 Score =  107 bits (54), Expect = 3e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                         
Query: 187   agaatcacaactcgtcgttgggcgcagagctgtccgccatgagctcctcgagcgagaact 246
             |||||||||||||||| ||    | |||| |||| ||||| |||||||| || ||||| |
Sbjct: 78731 agaatcacaactcgtcatttactggagagttgtcggccatcagctcctcaagggagaatt 78672

                                                                         
Query: 247   cgtcctcctcgatgacctctccatccttgccgtcccatggttccgactggaccaccgtcg 306
             ||||||| || || ||||| ||||| ||||||||||||||||| || ||||| | ||| |
Sbjct: 78671 cgtcctcttcaataacctcaccatctttgccgtcccatggttcagattggactatcgttg 78612

                                                                       
Query: 307   gggcgccctccagaggaaggttgccctttccgccgcgccctgcctccttcacaaactc 364
             |||  || |||| |||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct: 78611 gggtaccgtccaaaggaagattacccttcccaccgcgccctgcttccttcacaaactc 78554



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 390   ctacggagcggagcgtatgcgcctttcttcacgttgagagcgaccatggctggatagcca 449
             |||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 78446 ctacggagtggagcatatgcgccttttttcacgttgagagcaaccatcgctggatagcca 78387

                           
Query: 450   tagccaccgactcc 463
             || ||||| |||||
Sbjct: 78386 taaccaccaactcc 78373

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>gb|AC011382.4| Homo sapiens chromosome 5 clone CTB-13H5, complete sequence
          Length = 86829

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 86    ataaagaaaaggcattccaaaaagtg 111
             |||||||| |||||||||||||||||
Sbjct: 50467 ataaagaataggcattccaaaaagtg 50492

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>emb|BX511005.6| Zebrafish DNA sequence from clone DKEY-72N1 in linkage group 5,
             complete sequence
          Length = 139111

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   caaattgtacagtgtacacat 139
             |||||||||||||||||||||
Sbjct: 59485 caaattgtacagtgtacacat 59505

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>gb|AE004686.1| Pseudomonas aeruginosa PAO1, section 247 of 529 of the complete
            genome
          Length = 10905

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 252  tcctcgatgacctctccatcc 272
            |||||||||||||||||||||
Sbjct: 9036 tcctcgatgacctctccatcc 9016

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>gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, complete sequence
          Length = 188691

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    taaagaaaaggcattccaaaa 107
             |||||||||||||||||||||
Sbjct: 24672 taaagaaaaggcattccaaaa 24692

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>ref|XM_483499.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1345

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  tgacctctccatccttgccg 278
            ||||||||||||||||||||
Sbjct: 1050 tgacctctccatccttgccg 1031

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>gb|AC110913.13| Mus musculus chromosome 19, clone RP24-399E19, complete sequence
          Length = 208309

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 325   ggttgccctttccgccgcgccctgcctccttc 356
             ||||||||||||| || | |||||||||||||
Sbjct: 75976 ggttgccctttccccctctccctgcctccttc 76007

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>gb|AC113587.16| Mus musculus chromosome 15, clone RP24-424I13, complete sequence
          Length = 191054

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   atggctggatagccatagcc 454
             ||||||||||||||||||||
Sbjct: 58625 atggctggatagccatagcc 58644

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>gb|AC158606.14| Mus musculus 10 BAC RP24-456P10 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 162274

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    ctaacattgagataaagaaa 94
             ||||||||||||||||||||
Sbjct: 38331 ctaacattgagataaagaaa 38312

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>ref|XM_953631.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial
            mRNA
          Length = 3048

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  tcctcgatgacctctccatc 271
            ||||||||||||||||||||
Sbjct: 1370 tcctcgatgacctctccatc 1351

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>ref|XM_330307.1| Neurospora crassa OR74A hypothetical protein (NCU09658.1) partial
            mRNA
          Length = 3048

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  tcctcgatgacctctccatc 271
            ||||||||||||||||||||
Sbjct: 1370 tcctcgatgacctctccatc 1351

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>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence
          Length = 171061

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    gagaactcgtcctcctcgat 259
              ||||||||||||||||||||
Sbjct: 170896 gagaactcgtcctcctcgat 170915

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>gb|AC131669.3| Mus musculus BAC clone RP23-307E9 from chromosome 7, complete sequence
          Length = 189956

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tgctaacattgagataaaga 92
              ||||||||||||||||||||
Sbjct: 127402 tgctaacattgagataaaga 127383

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>gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, complete sequence
          Length = 236220

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     agataaagaaaaggcattcc 103
              ||||||||||||||||||||
Sbjct: 140406 agataaagaaaaggcattcc 140387

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>gb|AC122250.4| Mus musculus BAC clone RP23-167A3 from chromosome 19, complete sequence
          Length = 202060

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     caaggacacccccacacctt 48
              ||||||||||||||||||||
Sbjct: 137450 caaggacacccccacacctt 137469

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>emb|AJ224870.1|SCAJ4870 Streptomyces clavuligerus lexA, nrdR & nrdJ genes
          Length = 5940

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  ctcgtcctcctcgatgacct 264
            ||||||||||||||||||||
Sbjct: 5665 ctcgtcctcctcgatgacct 5646

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>gb|AC162304.4| Mus musculus chromosome 7, clone RP23-350J16, complete sequence
          Length = 219899

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   gagaactcgtcctcctcgat 259
             ||||||||||||||||||||
Sbjct: 33851 gagaactcgtcctcctcgat 33870

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>gb|AC114407.24| Mus musculus chromosome 10, clone RP23-51G1, complete sequence
          Length = 143388

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   ctaacattgagataaagaaa 94
            ||||||||||||||||||||
Sbjct: 5674 ctaacattgagataaagaaa 5693

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>emb|AL096814.26|HSDJ139D8 Human DNA sequence from clone RP1-139D8 on chromosome 6p12.1-21.1
              Contains genes for GUCA1A (guanylate cyclase activator 1A)
              and GUCA1B (guanylate cyclase activator 1B) both from
              retina, the 3' end of the TReP-132 gene for zinc finger
              transcription regulating protein, the MRPS10 gene for
              mitochondrial ribosomal protein S10, the 5' end the gene
              for a novel protein, the gene for a novel protein and two
              CpG Islands, complete sequence
          Length = 167078

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     cacccccacaccttgcacac 54
              ||||||||||||||||||||
Sbjct: 147301 cacccccacaccttgcacac 147320

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>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7 Contains
              a novel gene similar to PPP1R14B (protein phosphatase 1,
              regulatory (inhibitor) subunit 14B), a novel gene similar
              to BRMS1 (breast cancer metastasis-suppressor 1 (BRMS1),
              the pc gene for pyruvate carboxylase and three putative
              novel retrotransposons, complete sequence
          Length = 192531

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    tgcctccttcacaaactcgg 366
              ||||||||||||||||||||
Sbjct: 144220 tgcctccttcacaaactcgg 144201

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>gb|AC080066.6| Homo sapiens BAC clone CTD-2321M19 from 7, complete sequence
          Length = 75793

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    aagaaaaggcattccaaaaa 108
             ||||||||||||||||||||
Sbjct: 16415 aagaaaaggcattccaaaaa 16396

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 259      tgacctctccatccttgccg 278
                ||||||||||||||||||||
Sbjct: 26540041 tgacctctccatccttgccg 26540060

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>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0702E04
          Length = 190948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   tgacctctccatccttgccg 278
             ||||||||||||||||||||
Sbjct: 88908 tgacctctccatccttgccg 88927

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>dbj|AP000388.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MRI12
          Length = 18212

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   aagaaaaggcattccaaaaa 108
            ||||||||||||||||||||
Sbjct: 9513 aagaaaaggcattccaaaaa 9494

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>emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in linkage group 20,
             complete sequence
          Length = 107263

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   tgcctccttcacaaactcgg 366
             ||||||||||||||||||||
Sbjct: 31198 tgcctccttcacaaactcgg 31217

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>dbj|AK119370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H09, full
            insert sequence
          Length = 2945

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  tgacctctccatccttgccg 278
            ||||||||||||||||||||
Sbjct: 1139 tgacctctccatccttgccg 1158

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>dbj|AK073978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N21, full
            insert sequence
          Length = 1345

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  tgacctctccatccttgccg 278
            ||||||||||||||||||||
Sbjct: 1050 tgacctctccatccttgccg 1031

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>tpe|BN000648.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx119 gene for
            class III peroxidase 119 precursor, exons 1-3
          Length = 2477

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  tgacctctccatccttgccg 278
            ||||||||||||||||||||
Sbjct: 2448 tgacctctccatccttgccg 2429

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>emb|AL355834.4|CNS05TCN Human chromosome 14 DNA sequence BAC R-932A10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 222275

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    cacccccacaccttgcacac 54
             ||||||||||||||||||||
Sbjct: 61935 cacccccacaccttgcacac 61916

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>gb|AC123724.9| Mus musculus chromosome 15, clone RP23-432N1, complete sequence
          Length = 200503

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 435    atggctggatagccatagcc 454
              ||||||||||||||||||||
Sbjct: 182782 atggctggatagccatagcc 182801

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>emb|BX005253.10| Mouse DNA sequence from clone RP23-300D2 on chromosome X, complete
             sequence
          Length = 135141

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    caccagagctttctcccaca 71
             ||||||||||||||||||||
Sbjct: 90871 caccagagctttctcccaca 90890

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>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29
          Length = 303450

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    ggaccaccgtcggggcgccc 314
              ||||||||||||||||||||
Sbjct: 157627 ggaccaccgtcggggcgccc 157646

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>emb|AL135758.32| Mouse DNA sequence from clone RP21-117J5 on chromosome 5, complete
           sequence
          Length = 142667

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 52  caccagagctttctcccaca 71
           ||||||||||||||||||||
Sbjct: 690 caccagagctttctcccaca 709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,401,055
Number of Sequences: 3902068
Number of extensions: 3401055
Number of successful extensions: 63554
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63444
Number of HSP's gapped (non-prelim): 103
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result