Clone Name | rbart46f01 |
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Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 182 bits (92), Expect = 6e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 243 tggaacacgtggtcctgccccggcgtgtccaccagctcggcctccccgcgccacccgctc 302 ||||||| |||||| | ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 5825265 tggaacaagtggtcttcccccggcgtgtccaccagctcggcctccccgtgccaccggctc 5825206 Query: 303 gcgagcagcgccgcatggtacgcccgccccttcaccgccaggaagtcgtcgcccgccacg 362 || | |||||||| |||||||||| ||| ||| |||||||||||||||| || |||||| Sbjct: 5825205 gccacgagcgccgcgtggtacgccctccctttccccgccaggaagtcgtccccggccacg 5825146 Query: 363 gccaccatcgccctcctgcacggcagcgccgc 394 ||||||||| |||||||||||||||||||||| Sbjct: 5825145 gccaccatcaccctcctgcacggcagcgccgc 5825114
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 182 bits (92), Expect = 6e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 243 tggaacacgtggtcctgccccggcgtgtccaccagctcggcctccccgcgccacccgctc 302 ||||||| |||||| | ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 140794 tggaacaagtggtcttcccccggcgtgtccaccagctcggcctccccgtgccaccggctc 140735 Query: 303 gcgagcagcgccgcatggtacgcccgccccttcaccgccaggaagtcgtcgcccgccacg 362 || | |||||||| |||||||||| ||| ||| |||||||||||||||| || |||||| Sbjct: 140734 gccacgagcgccgcgtggtacgccctccctttccccgccaggaagtcgtccccggccacg 140675 Query: 363 gccaccatcgccctcctgcacggcagcgccgc 394 ||||||||| |||||||||||||||||||||| Sbjct: 140674 gccaccatcaccctcctgcacggcagcgccgc 140643
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 182 bits (92), Expect = 6e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 243 tggaacacgtggtcctgccccggcgtgtccaccagctcggcctccccgcgccacccgctc 302 ||||||| |||||| | ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 26040 tggaacaagtggtcttcccccggcgtgtccaccagctcggcctccccgtgccaccggctc 25981 Query: 303 gcgagcagcgccgcatggtacgcccgccccttcaccgccaggaagtcgtcgcccgccacg 362 || | |||||||| |||||||||| ||| ||| |||||||||||||||| || |||||| Sbjct: 25980 gccacgagcgccgcgtggtacgccctccctttccccgccaggaagtcgtccccggccacg 25921 Query: 363 gccaccatcgccctcctgcacggcagcgccgc 394 ||||||||| |||||||||||||||||||||| Sbjct: 25920 gccaccatcaccctcctgcacggcagcgccgc 25889
>dbj|AK108107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B08, full insert sequence Length = 1131 Score = 182 bits (92), Expect = 6e-43 Identities = 137/152 (90%) Strand = Plus / Minus Query: 243 tggaacacgtggtcctgccccggcgtgtccaccagctcggcctccccgcgccacccgctc 302 ||||||| |||||| | ||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 952 tggaacaagtggtcttcccccggcgtgtccaccagctcggcctccccgtgccaccggctc 893 Query: 303 gcgagcagcgccgcatggtacgcccgccccttcaccgccaggaagtcgtcgcccgccacg 362 || | |||||||| |||||||||| ||| ||| |||||||||||||||| || |||||| Sbjct: 892 gccacgagcgccgcgtggtacgccctccctttccccgccaggaagtcgtccccggccacg 833 Query: 363 gccaccatcgccctcctgcacggcagcgccgc 394 ||||||||| |||||||||||||||||||||| Sbjct: 832 gccaccatcaccctcctgcacggcagcgccgc 801
>dbj|AP004247.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-659P15, complete sequence Length = 203084 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 10 gggatttcatggctcatgaggcaaa 34 ||||||||||||||||||||||||| Sbjct: 72507 gggatttcatggctcatgaggcaaa 72531
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Plus Query: 289 cgcgccacccgctcgcgagcagcgccgc 316 ||||||| |||||||||||||||||||| Sbjct: 1207548 cgcgccagccgctcgcgagcagcgccgc 1207575 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 cgtcgcccgccacggccacc 368 |||||||||||||||||||| Sbjct: 2595340 cgtcgcccgccacggccacc 2595359
>gb|U04297.1|OSU04297 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-2b) mRNA, complete cds Length = 1080 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 cggcctccccgcgccacccgc 300 ||||||||||||||||||||| Sbjct: 313 cggcctccccgcgccacccgc 333
>ref|XM_479408.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1350 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gtacgcccgccccttcaccgccag 343 |||||| ||||||||||||||||| Sbjct: 276 gtacgcgcgccccttcaccgccag 253
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccgccacggccaccatcgcc 374 |||||||||||||||||||| Sbjct: 106288 ccgccacggccaccatcgcc 106269
>gb|AY577942.1| Petromyzon marinus clone PAC4 variable lymphocyte receptor (VLR) gene, partial sequence Length = 58162 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cgaccacaattccacttcaa 153 |||||||||||||||||||| Sbjct: 19231 cgaccacaattccacttcaa 19250
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 383 cggcagcgccgcgagccgcggcgc 406 |||||||| ||||||||||||||| Sbjct: 2376339 cggcagcggcgcgagccgcggcgc 2376316
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 cggcagcgccgcgagccgcggcgc 406 |||||||| ||||||||||||||| Sbjct: 2008226 cggcagcggcgcgagccgcggcgc 2008249
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gtacgcccgccccttcaccgccag 343 |||||| ||||||||||||||||| Sbjct: 27693045 gtacgcgcgccccttcaccgccag 27693022
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccgccacggccaccatcgcc 374 |||||||||||||||||||| Sbjct: 2013411 ccgccacggccaccatcgcc 2013392
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 ccgctcgcgagcagcgccgc 316 |||||||||||||||||||| Sbjct: 4986985 ccgctcgcgagcagcgccgc 4986966
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 gcctccccgcgccacccgctcgcg 305 |||||||||||||||| ||||||| Sbjct: 1331074 gcctccccgcgccaccggctcgcg 1331051
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gtacgcccgccccttcaccgccag 343 |||||| ||||||||||||||||| Sbjct: 150038 gtacgcgcgccccttcaccgccag 150015
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 gtacgcccgccccttcaccgccag 343 |||||| ||||||||||||||||| Sbjct: 72147 gtacgcgcgccccttcaccgccag 72124
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cggcagcgccgcgagccgcg 402 |||||||||||||||||||| Sbjct: 2979843 cggcagcgccgcgagccgcg 2979824
>dbj|AK063587.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A08, full insert sequence Length = 826 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccgccacggccaccatcgcc 374 |||||||||||||||||||| Sbjct: 198 ccgccacggccaccatcgcc 179
>tpe|BN000599.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx70 gene for class III peroxidase 70 precursor, exons 1-2 Length = 1356 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccgccacggccaccatcgcc 374 |||||||||||||||||||| Sbjct: 55 ccgccacggccaccatcgcc 36 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,601,855 Number of Sequences: 3902068 Number of extensions: 2601855 Number of successful extensions: 47930 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46613 Number of HSP's gapped (non-prelim): 1317 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)