>gb|AC108704.3| Homo sapiens 12 BAC RP11-21K12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 117432

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    aacctatattttcagggtgct 34
             |||||||||||||||||||||
Sbjct: 25723 aacctatattttcagggtgct 25703

>gb|AC121560.17| Mus musculus chromosome 16, clone RP24-398G11, complete sequence
          Length = 189161

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     caacctatattttcagggtg 32
              ||||||||||||||||||||
Sbjct: 128875 caacctatattttcagggtg 128856

>gb|AC092881.8| Homo sapiens 12 BAC RP11-398J13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 123532

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     taataaacccccaacctatatttt 25
             |||||||||||||| |||||||||
Sbjct: 18177 taataaacccccaatctatatttt 18200

>gb|AC138355.17| Mus musculus chromosome 8, clone RP24-281G1, complete sequence
          Length = 154808

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     aataaacccccaacctata 21
             |||||||||||||||||||
Sbjct: 98132 aataaacccccaacctata 98150

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 18       tatattttcagggtgctga 36
                |||||||||||||||||||
Sbjct: 12242300 tatattttcagggtgctga 12242282

>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0426D06
          Length = 162173

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    tatattttcagggtgctga 36
             |||||||||||||||||||
Sbjct: 66926 tatattttcagggtgctga 66908

>gb|AY944236.1| Bos taurus prion preproprotein (PRNP) and prion-like protein doppel
              preproprotein (PRND) genes, complete cds; and RASSF2 gene,
              complete sequence
          Length = 207929

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     aacctatattttcagggt 31
              ||||||||||||||||||
Sbjct: 189994 aacctatattttcagggt 190011

>emb|AL390877.9| Human DNA sequence from clone RP11-134N8 on chromosome 1 Contains a
              proline-rich nuclear receptor coactivator 2 (PNRC2)
              pseudogene, complete sequence
          Length = 149598

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 12     ccaacctatattttcagg 29
              ||||||||||||||||||
Sbjct: 113944 ccaacctatattttcagg 113927

>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 7/11
          Length = 349943

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     taaacccccaacctatat 22
             ||||||||||||||||||
Sbjct: 81530 taaacccccaacctatat 81513

>emb|BX324131.6| Zebrafish DNA sequence from clone CH211-119E14 in linkage group 7,
              complete sequence
          Length = 198318

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     aacctatattttcagggt 31
              ||||||||||||||||||
Sbjct: 128373 aacctatattttcagggt 128390

>gb|AC012455.8| Homo sapiens BAC clone RP11-442O5 from 2, complete sequence
          Length = 97239

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     acccccaacctatatttt 25
             ||||||||||||||||||
Sbjct: 19573 acccccaacctatatttt 19590

>gb|AY193550.1|AY193551S2 Lactuca sativa clone TDR resistance protein RGC2 (RGC2) pseudogene,
            partial sequence
          Length = 7016

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 6    aaacccccaacctatattttca 27
            |||||| |||||||||||||||
Sbjct: 6116 aaacccacaacctatattttca 6137

>gb|AY193543.1| Lactuca sativa clone TDL resistance protein candidate RGC2 (RGC2)
            pseudogene, complete sequence
          Length = 8225

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   ccccaacctatattttca 27
            ||||||||||||||||||
Sbjct: 7898 ccccaacctatattttca 7915


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 287,412
Number of Sequences: 3902068
Number of extensions: 287412
Number of successful extensions: 75178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75125
Number of HSP's gapped (non-prelim): 53
length of query: 38
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 18
effective length of database: 17,155,003,908
effective search space: 308790070344
effective search space used: 308790070344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)