Clone Name | rbart46e07 |
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Clone Library Name | barley_pub |
>ref|XM_506878.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1626_B09.5 mRNA Length = 1604 Score = 244 bits (123), Expect = 2e-61 Identities = 253/295 (85%), Gaps = 1/295 (0%) Strand = Plus / Minus Query: 230 ttcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaac 289 |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 1233 ttcacggtcaggctcagcacctcgggtcgtgcatagtgtcccacgacgtcgaaatcaaac 1174 Query: 290 ttggctcgaacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatag 349 || |||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct: 1173 ttagctcgagcaatttctccaaggtccaagtcagctgtgaggaggccctcgccttcatag 1114 Query: 350 ttgggacctgccagcactgtcccagatggcgaaatgatggagctccctccaggacaaaca 409 || ||||||||||| ||||| |||||||| || | |||||| || |||||||| |||| | Sbjct: 1113 tttggacctgccagaactgttccagatggtgagacgatggaacttcctccaggccaaata 1054 Query: 410 gcggtttctggggatggctcctcctcatggccaccaaaggtgtactcaggtgggggagga 469 | | ||||||||||||||| || ||| |||||||||| || || ||||| | || ||| Sbjct: 1053 acagattctggggatggctcttcatcaaggccaccaaaagtatattcaggcgctggtgga 994 Query: 470 aagtcttttctgaggcagaactggtttgctgtcagaac-aagcatcccccttcaa 523 ||| |||||| | || ||||||||||| | || || |||||||||||||||| Sbjct: 993 tagttctttctgcgacaaaactggtttgcagaaagtacaaagcatcccccttcaa 939
>ref|XM_466923.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1480 Score = 244 bits (123), Expect = 2e-61 Identities = 253/295 (85%), Gaps = 1/295 (0%) Strand = Plus / Minus Query: 230 ttcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaac 289 |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 1250 ttcacggtcaggctcagcacctcgggtcgtgcatagtgtcccacgacgtcgaaatcaaac 1191 Query: 290 ttggctcgaacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatag 349 || |||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct: 1190 ttagctcgagcaatttctccaaggtccaagtcagctgtgaggaggccctcgccttcatag 1131 Query: 350 ttgggacctgccagcactgtcccagatggcgaaatgatggagctccctccaggacaaaca 409 || ||||||||||| ||||| |||||||| || | |||||| || |||||||| |||| | Sbjct: 1130 tttggacctgccagaactgttccagatggtgagacgatggaacttcctccaggccaaata 1071 Query: 410 gcggtttctggggatggctcctcctcatggccaccaaaggtgtactcaggtgggggagga 469 | | ||||||||||||||| || ||| |||||||||| || || ||||| | || ||| Sbjct: 1070 acagattctggggatggctcttcatcaaggccaccaaaagtatattcaggcgctggtgga 1011 Query: 470 aagtcttttctgaggcagaactggtttgctgtcagaac-aagcatcccccttcaa 523 ||| |||||| | || ||||||||||| | || || |||||||||||||||| Sbjct: 1010 tagttctttctgcgacaaaactggtttgcagaaagtacaaagcatcccccttcaa 956
>dbj|AK069855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036G11, full insert sequence Length = 1602 Score = 244 bits (123), Expect = 2e-61 Identities = 253/295 (85%), Gaps = 1/295 (0%) Strand = Plus / Minus Query: 230 ttcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaac 289 |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 1231 ttcacggtcaggctcagcacctcgggtcgtgcatagtgtcccacgacgtcgaaatcaaac 1172 Query: 290 ttggctcgaacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatag 349 || |||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct: 1171 ttagctcgagcaatttctccaaggtccaagtcagctgtgaggaggccctcgccttcatag 1112 Query: 350 ttgggacctgccagcactgtcccagatggcgaaatgatggagctccctccaggacaaaca 409 || ||||||||||| ||||| |||||||| || | |||||| || |||||||| |||| | Sbjct: 1111 tttggacctgccagaactgttccagatggtgagacgatggaacttcctccaggccaaata 1052 Query: 410 gcggtttctggggatggctcctcctcatggccaccaaaggtgtactcaggtgggggagga 469 | | ||||||||||||||| || ||| |||||||||| || || ||||| | || ||| Sbjct: 1051 acagattctggggatggctcttcatcaaggccaccaaaagtatattcaggcgctggtgga 992 Query: 470 aagtcttttctgaggcagaactggtttgctgtcagaac-aagcatcccccttcaa 523 ||| |||||| | || ||||||||||| | || || |||||||||||||||| Sbjct: 991 tagttctttctgcgacaaaactggtttgcagaaagtacaaagcatcccccttcaa 937
>dbj|AK058965.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C07, full insert sequence Length = 1480 Score = 244 bits (123), Expect = 2e-61 Identities = 253/295 (85%), Gaps = 1/295 (0%) Strand = Plus / Minus Query: 230 ttcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaac 289 |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 1250 ttcacggtcaggctcagcacctcgggtcgtgcatagtgtcccacgacgtcgaaatcaaac 1191 Query: 290 ttggctcgaacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatag 349 || |||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct: 1190 ttagctcgagcaatttctccaaggtccaagtcagctgtgaggaggccctcgccttcatag 1131 Query: 350 ttgggacctgccagcactgtcccagatggcgaaatgatggagctccctccaggacaaaca 409 || ||||||||||| ||||| |||||||| || | |||||| || |||||||| |||| | Sbjct: 1130 tttggacctgccagaactgttccagatggtgagacgatggaacttcctccaggccaaata 1071 Query: 410 gcggtttctggggatggctcctcctcatggccaccaaaggtgtactcaggtgggggagga 469 | | ||||||||||||||| || ||| |||||||||| || || ||||| | || ||| Sbjct: 1070 acagattctggggatggctcttcatcaaggccaccaaaagtatattcaggcgctggtgga 1011 Query: 470 aagtcttttctgaggcagaactggtttgctgtcagaac-aagcatcccccttcaa 523 ||| |||||| | || ||||||||||| | || || |||||||||||||||| Sbjct: 1010 tagttctttctgcgacaaaactggtttgcagaaagtacaaagcatcccccttcaa 956
>gb|AY156979.1| Zea mays nitrilase 1 (NIT1) mRNA, complete cds Length = 1784 Score = 198 bits (100), Expect = 1e-47 Identities = 239/284 (84%), Gaps = 1/284 (0%) Strand = Plus / Minus Query: 242 ctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcgaaca 301 ||||||||||||||||| | |||||| ||||| ||||| ||||||||||||||||||||| Sbjct: 1492 ctcagcacctcaggtcgcgagtagtggcccaccacgtcaaaatcaaacttggctcgaaca 1433 Query: 302 atttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagttgggacctgcc 361 || |||||||||||||||||||| ||||| |||||||| | ||| ||||||||||| ||| Sbjct: 1432 atctctccaaggtccaggtcagcagtgagaagggcctcactttcgtagttgggacccgcc 1373 Query: 362 agcactgtcccagatggcgaaatgatggagctccctccaggacaaacagcggtttctggg 421 | |||||| || |||| || |||||| |||||||||| ||||||| ||| ||| ||| Sbjct: 1372 aacactgttcccaatggtgagatgatgacactccctccagaacaaacaacggattccggg 1313 Query: 422 gatggctcctcctcatggccaccaaaggtgtactcaggtgggggaggaaagtcttttctg 481 |||||||| ||||| |||||| ||| |||||||| || |||||||| ||| ||||| Sbjct: 1312 gatggctcttcctctaggccacaaaatgtgtactcgggagggggagggtagttctttcta 1253 Query: 482 aggcagaactggtttgctgtcagaac-aagcatcccccttcaag 524 | ||||||||| |||| ||| || ||||||||||||||||| Sbjct: 1252 cgacagaactggcacgctgacagcacaaagcatcccccttcaag 1209
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 123 bits (62), Expect = 6e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 230 ttcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaac 289 |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 25480849 ttcacggtcaggctcagcacctcgggtcgtgcatagtgtcccacgacgtcgaaatcaaac 25480790 Query: 290 ttggctcgaacaatttctccaaggtc 315 || |||||| |||||||||||||||| Sbjct: 25480789 ttagctcgagcaatttctccaaggtc 25480764 Score = 123 bits (62), Expect = 6e-25 Identities = 171/206 (83%), Gaps = 1/206 (0%) Strand = Plus / Minus Query: 319 gtcagctgtgaggagggcctcgccttcatagttgggacctgccagcactgtcccagatgg 378 |||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 25480538 gtcagctgtgaggaggccctcgccttcatagtttggacctgccagaactgttccagatgg 25480479 Query: 379 cgaaatgatggagctccctccaggacaaacagcggtttctggggatggctcctcctcatg 438 || | |||||| || |||||||| |||| | | | ||||||||||||||| || ||| | Sbjct: 25480478 tgagacgatggaacttcctccaggccaaataacagattctggggatggctcttcatcaag 25480419 Query: 439 gccaccaaaggtgtactcaggtgggggaggaaagtcttttctgaggcagaactggtttgc 498 ||||||||| || || ||||| | || ||| ||| |||||| | || ||||||||||| Sbjct: 25480418 gccaccaaaagtatattcaggcgctggtggatagttctttctgcgacaaaactggtttgc 25480359 Query: 499 tgtcagaac-aagcatcccccttcaa 523 | || || |||||||||||||||| Sbjct: 25480358 agaaagtacaaagcatcccccttcaa 25480333 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 25487647 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaaatcaaacttggctcg 25487588 Query: 298 aacaatttctccaaggtc 315 || |||||||||||||| Sbjct: 25487587 cacgatttctccaaggtc 25487570 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 335 gcctcgccttcatagttgggacctgcca 362 ||||| ||||| |||||||||||||||| Sbjct: 25487401 gcctccccttcgtagttgggacctgcca 25487374
>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1626_B09 Length = 58749 Score = 123 bits (62), Expect = 6e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 230 ttcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaac 289 |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 25399 ttcacggtcaggctcagcacctcgggtcgtgcatagtgtcccacgacgtcgaaatcaaac 25340 Query: 290 ttggctcgaacaatttctccaaggtc 315 || |||||| |||||||||||||||| Sbjct: 25339 ttagctcgagcaatttctccaaggtc 25314 Score = 123 bits (62), Expect = 6e-25 Identities = 171/206 (83%), Gaps = 1/206 (0%) Strand = Plus / Minus Query: 319 gtcagctgtgaggagggcctcgccttcatagttgggacctgccagcactgtcccagatgg 378 |||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| Sbjct: 25088 gtcagctgtgaggaggccctcgccttcatagtttggacctgccagaactgttccagatgg 25029 Query: 379 cgaaatgatggagctccctccaggacaaacagcggtttctggggatggctcctcctcatg 438 || | |||||| || |||||||| |||| | | | ||||||||||||||| || ||| | Sbjct: 25028 tgagacgatggaacttcctccaggccaaataacagattctggggatggctcttcatcaag 24969 Query: 439 gccaccaaaggtgtactcaggtgggggaggaaagtcttttctgaggcagaactggtttgc 498 ||||||||| || || ||||| | || ||| ||| |||||| | || ||||||||||| Sbjct: 24968 gccaccaaaagtatattcaggcgctggtggatagttctttctgcgacaaaactggtttgc 24909 Query: 499 tgtcagaac-aagcatcccccttcaa 523 | || || |||||||||||||||| Sbjct: 24908 agaaagtacaaagcatcccccttcaa 24883 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 32197 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaaatcaaacttggctcg 32138 Query: 298 aacaatttctccaaggtc 315 || |||||||||||||| Sbjct: 32137 cacgatttctccaaggtc 32120 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 335 gcctcgccttcatagttgggacctgcca 362 ||||| ||||| |||||||||||||||| Sbjct: 31951 gcctccccttcgtagttgggacctgcca 31924
>gb|AY156978.1| Zea mays nitrilase 2 (NIT2) mRNA, complete cds Length = 1397 Score = 117 bits (59), Expect = 4e-23 Identities = 125/147 (85%) Strand = Plus / Minus Query: 263 tagtgtcccacgacgtcgaaatcaaacttggctcgaacaatttctccaaggtccaggtca 322 ||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 1041 tagtggcccaccacgtcgaaatcaaacttggctcgaacaatctctcccaggtcaaggtcg 982 Query: 323 gctgtgaggagggcctcgccttcatagttgggacctgccagcactgtcccagatggcgaa 382 ||||| | || ||||| |||||||||||||||||||||| ||| |||||||| ||| Sbjct: 981 gctgtaatcagtgcctctccttcatagttgggacctgccaagacttctccagatggagaa 922 Query: 383 atgatggagctccctccaggacaaaca 409 ||||| ||| |||||||| |||||| Sbjct: 921 atgataacgctgcctccagggcaaaca 895 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 452 tactcaggtgggggaggaaagtcttttctgaggcagaactggtttgctg 500 ||||| |||||||||||| |||| |||||| ||||||| |||||||||| Sbjct: 852 tactccggtgggggaggatagtcctttctgcggcagaattggtttgctg 804
>ref|XM_466925.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1433 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 1084 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaaatcaaacttggctcg 1025 Query: 298 aacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagttgggacc 357 || |||||||||||||| || |||||||| | || ||||| ||||| ||||||||||| Sbjct: 1024 cacgatttctccaaggtctagatcagctgtaatcagcgcctccccttcgtagttgggacc 965 Query: 358 tgcca 362 ||||| Sbjct: 964 tgcca 960
>ref|XM_507514.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1626_B09.8 mRNA Length = 1450 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 1101 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaaatcaaacttggctcg 1042 Query: 298 aacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagttgggacc 357 || |||||||||||||| || |||||||| | || ||||| ||||| ||||||||||| Sbjct: 1041 cacgatttctccaaggtctagatcagctgtaatcagcgcctccccttcgtagttgggacc 982 Query: 358 tgcca 362 ||||| Sbjct: 981 tgcca 977
>ref|XM_506879.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1626_B09.8 mRNA Length = 1488 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 1116 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaaatcaaacttggctcg 1057 Query: 298 aacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagttgggacc 357 || |||||||||||||| || |||||||| | || ||||| ||||| ||||||||||| Sbjct: 1056 cacgatttctccaaggtctagatcagctgtaatcagcgcctccccttcgtagttgggacc 997 Query: 358 tgcca 362 ||||| Sbjct: 996 tgcca 992
>dbj|AK121244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099C01, full insert sequence Length = 1448 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 1099 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaaatcaaacttggctcg 1040 Query: 298 aacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagttgggacc 357 || |||||||||||||| || |||||||| | || ||||| ||||| ||||||||||| Sbjct: 1039 cacgatttctccaaggtctagatcagctgtaatcagcgcctccccttcgtagttgggacc 980 Query: 358 tgcca 362 ||||| Sbjct: 979 tgcca 975
>dbj|AB027054.1| Oryza sativa (japonica cultivar-group) ONIT4 mRNA for nitrilase-like protein, complete cds Length = 1089 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 993 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaaatcaaacttggctcg 934 Query: 298 aacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagttgggacc 357 || |||||||||||||| || |||||||| | || ||||| ||||| ||||||||||| Sbjct: 933 cacgatttctccaaggtctagatcagctgtaatcagcgcctccccttcgtagttgggacc 874 Query: 358 tgcca 362 ||||| Sbjct: 873 tgcca 869
>gb|BT012945.1| Lycopersicon esculentum clone 114114R, mRNA sequence Length = 1442 Score = 103 bits (52), Expect = 6e-19 Identities = 130/156 (83%) Strand = Plus / Minus Query: 229 cttcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaa 288 ||||||| ||||||| || | ||||||| ||||||||||| || || || |||||||| Sbjct: 1067 cttcacgatcaagctaagaatttcaggtcttgcgtagtgtccaacaacatcaaaatcaaa 1008 Query: 289 cttggctcgaacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcata 348 |||||||||||||||||||||||| || || ||||||| || ||| ||||| || ||||| Sbjct: 1007 cttggctcgaacaatttctccaagatctagatcagctgagatgagtgcctccccgtcata 948 Query: 349 gttgggacctgccagcactgtcccagatggcgaaat 384 || || ||||| ||||||| ||| ||||| ||||| Sbjct: 947 atttggtcctgctagcactgcccctgatggtgaaat 912
>dbj|AK104033.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F10, full insert sequence Length = 1433 Score = 97.6 bits (49), Expect = 4e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || || |||||||||||||| Sbjct: 1084 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaagtcaaacttggctcg 1025 Query: 298 aacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagttgggacc 357 || |||||||||||||| || |||||||| | || ||||| ||||| ||||||||||| Sbjct: 1024 cacgatttctccaaggtctagatcagctgtaatcagcgcctccccttcgtagttgggacc 965 Query: 358 tgcca 362 ||||| Sbjct: 964 tgcca 960
>dbj|AK069985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038N06, full insert sequence Length = 1489 Score = 97.6 bits (49), Expect = 4e-17 Identities = 106/125 (84%) Strand = Plus / Minus Query: 238 caagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaacttggctcg 297 |||||||| ||||||||||| || ||||| ||||| || || ||||||||||||||||| Sbjct: 1116 caagctcaagacctcaggtcgagcatagtggcccaccacatcaaaatcaaacttggctcg 1057 Query: 298 aacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagttgggacc 357 || ||||||| |||||| || |||||||| | || ||||| ||||| ||||||||||| Sbjct: 1056 cacgatttctctaaggtctagatcagctgtaatcagcgcctccccttcgtagttgggacc 997 Query: 358 tgcca 362 ||||| Sbjct: 996 tgcca 992
>dbj|D83078.1|TOBTNIT4B Nicotiana tabacum mRNA for nitrilase, complete cds Length = 1282 Score = 77.8 bits (39), Expect = 3e-11 Identities = 123/151 (81%) Strand = Plus / Minus Query: 231 tcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaact 290 ||||| ||||||| || || ||||||| || ||||| || || || || |||||||||| Sbjct: 993 tcacgatcaagctaagaacttcaggtcttgcatagtggccaaccacatcaaaatcaaact 934 Query: 291 tggctcgaacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagt 350 |||||||| | ||||||||||| || || ||||||| || ||| ||||| |||||||| | Sbjct: 933 tggctcgagctatttctccaagatctagatcagctgagatgagtgcctccccttcataat 874 Query: 351 tgggacctgccagcactgtcccagatggcga 381 | || || |||||||| | ||| |||||||| Sbjct: 873 ttggtccggccagcacagcccctgatggcga 843
>dbj|D63331.1|TOBTNIT4A Nicotiana tabacum mRNA for nitrilase, complete cds Length = 1325 Score = 69.9 bits (35), Expect = 8e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 231 tcacggtcaagctcagcacctcaggtcgggcgtagtgtcccacgacgtcgaaatcaaact 290 ||||| ||||||| || || ||||||| || ||||| || || || || |||||||||| Sbjct: 996 tcacgatcaagctaagaacttcaggtcttgcatagtgcccaaccacatcaaaatcaaact 937 Query: 291 tggctcgaacaatttctccaaggtccaggtcagctgtgaggagggcctcgccttcatagt 350 |||||||| | ||||||||||| || || ||||||| || ||| ||||| ||| |||| | Sbjct: 936 tggctcgagctatttctccaagatctagatcagctgagatgagcgcctcccctacataat 877 Query: 351 tgggacctgccagcactgtcccagatggcga 381 | || || |||||||| | ||| |||||||| Sbjct: 876 ttggtccggccagcacagcccctgatggcga 846
>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence Length = 166114 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 453 actcaggtgggggaggaaagtct 475 ||||||||||||||||||||||| Sbjct: 149398 actcaggtgggggaggaaagtct 149420
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 151 cttgaaaataaaatcatctttg 172 |||||||||||||||||||||| Sbjct: 1411673 cttgaaaataaaatcatctttg 1411694
>emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 5/6 Length = 263335 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 151 cttgaaaataaaatcatctttg 172 |||||||||||||||||||||| Sbjct: 36657 cttgaaaataaaatcatctttg 36678
>dbj|AB061436.2| Homo sapiens FACL3 gene for Acyl-CoA synthetase 3, complete cds Length = 8749 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 cacaattattgctgtaatgta 96 ||||||||||||||||||||| Sbjct: 3199 cacaattattgctgtaatgta 3179
>gb|AC016712.6| Homo sapiens BAC clone RP11-266F17 from 2, complete sequence Length = 159748 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 cacaattattgctgtaatgta 96 ||||||||||||||||||||| Sbjct: 139804 cacaattattgctgtaatgta 139784
>emb|AL954831.17| Zebrafish DNA sequence from clone DKEY-12H9 in linkage group 20, complete sequence Length = 230844 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 142 acatcaggtcttgaaaataaaatca 166 ||||||| ||||||||||||||||| Sbjct: 127752 acatcagatcttgaaaataaaatca 127776
>emb|AL627214.15| Mouse DNA sequence from clone RP23-357K18 on chromosome 4, complete sequence Length = 182829 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 cttgaaaataaaatcatcttt 171 ||||||||||||||||||||| Sbjct: 134271 cttgaaaataaaatcatcttt 134291
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tttacaaaaatataaagaca 77 |||||||||||||||||||| Sbjct: 862551 tttacaaaaatataaagaca 862570
>gb|AC168220.1| Mus musculus BAC clone RP23-77O10 from chromosome 16, complete sequence Length = 215265 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 actcaggtgggggaggaaag 472 |||||||||||||||||||| Sbjct: 183596 actcaggtgggggaggaaag 183577
>emb|CR925737.7| Zebrafish DNA sequence from clone DKEY-263O8 in linkage group 10, complete sequence Length = 176107 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 aaaataggacatgtgcatgactta 24 |||||||||||||| ||||||||| Sbjct: 157170 aaaataggacatgttcatgactta 157193
>gb|AC121795.3| Mus musculus BAC clone RP23-421P13 from chromosome 17, complete sequence Length = 204354 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 acaattattgctgtaatgta 96 |||||||||||||||||||| Sbjct: 39865 acaattattgctgtaatgta 39884
>emb|BX004801.15| Zebrafish DNA sequence from clone CH211-203K12 in linkage group 22, complete sequence Length = 139199 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 138030 tcaggtcttgaaaataaaat 138049
>emb|BX957319.7| Zebrafish DNA sequence from clone CH211-113J14 in linkage group 6, complete sequence Length = 59626 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 18268 tcaggtcttgaaaataaaat 18249
>gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete sequence Length = 131577 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 tttacaaaaatataaagaca 77 |||||||||||||||||||| Sbjct: 66985 tttacaaaaatataaagaca 66966
>emb|CR354378.21| Zebrafish DNA sequence from clone CH211-131D10 in linkage group 7, complete sequence Length = 162741 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gacatcaggtcttgaaaataaaat 164 |||||||| ||||||||||||||| Sbjct: 48174 gacatcagatcttgaaaataaaat 48197
>emb|BX119920.7| Zebrafish DNA sequence from clone CH211-46O21 in linkage group 15, complete sequence Length = 123713 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 38380 tcaggtcttgaaaataaaat 38399
>emb|CR394562.10| Zebrafish DNA sequence from clone CH211-284D14 in linkage group 8, complete sequence Length = 134514 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 103363 tcaggtcttgaaaataaaat 103344
>emb|CR931740.2| Medicago truncatula chromosome 5 clone mth2-67g10, COMPLETE SEQUENCE Length = 153273 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 caaacttggctcgaacaatt 304 |||||||||||||||||||| Sbjct: 24460 caaacttggctcgaacaatt 24441
>gb|AC010619.7| Homo sapiens chromosome 19 clone CTD-3148I10, complete sequence Length = 179394 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aatataaagacacaattatt 85 |||||||||||||||||||| Sbjct: 93805 aatataaagacacaattatt 93824
>gb|AC108114.3| Homo sapiens chromosome 5 clone RP11-289K10, complete sequence Length = 161812 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ataaagacacaattattgct 88 |||||||||||||||||||| Sbjct: 21494 ataaagacacaattattgct 21475
>gb|AC093537.2| Homo sapiens chromosome 5 clone RP11-8L21, complete sequence Length = 169812 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 caggtcttgaaaataaaatc 165 |||||||||||||||||||| Sbjct: 60931 caggtcttgaaaataaaatc 60950
>gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, complete sequence Length = 128683 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ataaagacacaattattgct 88 |||||||||||||||||||| Sbjct: 50655 ataaagacacaattattgct 50674
>gb|AC162947.2| Mus musculus BAC clone RP23-12D16 from chromosome 8, complete sequence Length = 230889 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 atttctccaaggtccaggtcagct 325 |||||||||||||| ||||||||| Sbjct: 171671 atttctccaaggtcaaggtcagct 171694
>emb|BX323810.8| Zebrafish DNA sequence from clone CH211-153K16 in linkage group 14, complete sequence Length = 166625 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 109368 tcaggtcttgaaaataaaat 109349
>emb|BX005028.16| Zebrafish DNA sequence from clone CH211-177D23, complete sequence Length = 149509 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 59305 tcaggtcttgaaaataaaat 59324
>emb|BX005044.9| Zebrafish DNA sequence from clone DKEY-7L6 in linkage group 2, complete sequence Length = 174623 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 aaaatataaagacacaatta 83 |||||||||||||||||||| Sbjct: 19556 aaaatataaagacacaatta 19537
>emb|BX119909.5| Zebrafish DNA sequence from clone CH211-223I3 in linkage group 6, complete sequence Length = 221755 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 13902 tcaggtcttgaaaataaaat 13921
>emb|BX470181.7| Zebrafish DNA sequence from clone CH211-91P22 in linkage group 18, complete sequence Length = 186084 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aaaaatataaagacacaatt 82 |||||||||||||||||||| Sbjct: 124007 aaaaatataaagacacaatt 124026
>emb|BX072529.5| Zebrafish DNA sequence from clone DKEY-20D17 in linkage group 7, complete sequence Length = 223845 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 gacatcaggtcttgaaaataaaat 164 |||||||| ||||||||||||||| Sbjct: 155744 gacatcagatcttgaaaataaaat 155767
>emb|AL929053.5| Zebrafish DNA sequence from clone DKEY-21N12 in linkage group 20, complete sequence Length = 142345 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aatctttacaaaaatataaa 73 |||||||||||||||||||| Sbjct: 65079 aatctttacaaaaatataaa 65098
>emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in linkage group 18, complete sequence Length = 263615 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 77765 tcaggtcttgaaaataaaat 77746
>emb|AL929229.6| Zebrafish DNA sequence from clone CH211-1E14 in linkage group 18, complete sequence Length = 184794 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aaaaatataaagacacaatt 82 |||||||||||||||||||| Sbjct: 136435 aaaaatataaagacacaatt 136416
>emb|CR855881.9| Zebrafish DNA sequence from clone DKEY-232G12 in linkage group 10, complete sequence Length = 132337 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aatctttacaaaaatataaa 73 |||||||||||||||||||| Sbjct: 65109 aatctttacaaaaatataaa 65128
>emb|CR759791.15| Zebrafish DNA sequence from clone DKEY-66O5 in linkage group 22, complete sequence Length = 104755 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 103925 tcaggtcttgaaaataaaat 103906
>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724 Length = 820587 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 59 ttacaaaaatataaagacacaattattg 86 ||||||||||| |||||||| ||||||| Sbjct: 472189 ttacaaaaataaaaagacactattattg 472216
>gb|AC134855.5| Mus musculus BAC clone RP24-301M10 from 8, complete sequence Length = 142427 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 atttctccaaggtccaggtcagct 325 |||||||||||||| ||||||||| Sbjct: 889 atttctccaaggtcaaggtcagct 912
>gb|AC132082.3| Mus musculus BAC clone RP24-511K23 from 1, complete sequence Length = 165033 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 caaaaatataaagacacaat 81 |||||||||||||||||||| Sbjct: 2448 caaaaatataaagacacaat 2429
>gb|AC154200.1| Mus musculus BAC clone RP24-81G10 from 17, complete sequence Length = 216721 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 acaattattgctgtaatgta 96 |||||||||||||||||||| Sbjct: 182294 acaattattgctgtaatgta 182313
>gb|AC124553.4| Mus musculus BAC clone RP23-223I5 from 1, complete sequence Length = 179316 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 caaaaatataaagacacaat 81 |||||||||||||||||||| Sbjct: 23594 caaaaatataaagacacaat 23613
>emb|AL772396.7| Zebrafish DNA sequence from clone CH211-253F14, complete sequence Length = 148465 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tcaggtcttgaaaataaaat 164 |||||||||||||||||||| Sbjct: 56178 tcaggtcttgaaaataaaat 56197 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,568,364 Number of Sequences: 3902068 Number of extensions: 5568364 Number of successful extensions: 107745 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107523 Number of HSP's gapped (non-prelim): 215 length of query: 531 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 508 effective length of database: 17,143,297,704 effective search space: 8708795233632 effective search space used: 8708795233632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)