ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 103 3e-22
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 97 2e-20
3CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC... 35 0.13
4CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC... 32 1.1
5KPRS_BACSU (P14193) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 5.6
6CARB_ARCFU (O28994) Carbamoyl-phosphate synthase large chain (EC... 29 5.6
7SYH_SYMTH (Q67LN9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 29 7.3
8CARB_THET2 (P96495) Carbamoyl-phosphate synthase large chain (EC... 29 7.3
9FTHS_THEMA (Q9X287) Formate--tetrahydrofolate ligase (EC 6.3.4.3... 29 7.3
10ASPM_SAGLB (P62295) Abnormal spindle-like microcephaly-associate... 29 7.3
11AKIB1_MOUSE (Q6ZPS6) Ankyrin repeat and IBR domain-containing pr... 28 9.6

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score =  103 bits (256), Expect = 3e-22
 Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
 Frame = -2

Query: 477 VQRYYRALWARYSRVIDYVNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKT 298
           VQ +Y+ALW +Y   IDYVNFQFY Y A T V+ ++ +++ Q+  Y G KVL S     +
Sbjct: 190 VQSHYQALWEKYGHQIDYVNFQFYAYSARTSVEQFLKYFEEQSSNYHGGKVLVSF----S 245

Query: 297 TEELGLLSPDQGIAAAKELL-RQNKLPGFFIWSADSSKQSDYKFTYETRAQEIVAN 133
           T+  G L PD G   A  +L +Q KL G F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 246 TDSSGGLKPDNGFFRACSILKKQGKLHGIFVWSADDSLMSNNVFRYEMQAQSMLAS 301



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
 Frame = -2

Query: 477 VQRYYRALWARYSRVIDYVNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKT 298
           VQ +Y+ALW +Y   IDYVNFQFY Y +   V+ ++ +++ Q   YPG KVL S     +
Sbjct: 164 VQSHYQALWEKYGHQIDYVNFQFYVYSSRMSVEQFLKYFEMQRSNYPGGKVLVSF----S 219

Query: 297 TEELGLLSPDQGIAAAKELL-RQNKLPGFFIWSADSSKQSDYKFTYETRAQEIVAN 133
           T+  G L P  G   A  +L +Q KL G F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 220 TDNSGGLKPRNGFFDACSILKKQGKLHGIFVWSADDSLMSNDVFKYEMQAQSLLAS 275



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>CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1081

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
 Frame = -2

Query: 480  TVQRYYRALWARYSRVIDYVNFQFYGYG-------ANTDVQTYVMFYDRQTGYYPGAKVL 322
            T  R +    AR   V+  +N Q+   G       AN      V +  + TG  P AK+ 
Sbjct: 815  TTIRQWTEQLARALNVVGLMNIQYAVQGDQVYILEANPRASRTVPYVSKATGR-PLAKIA 873

Query: 321  ASLQTGKTTEELGLLSP--DQGIAAAKELLRQNKLPG 217
            + + +GKT EELG+      Q +A  + +L  +K PG
Sbjct: 874  SLVMSGKTLEELGVTEEFIPQHVAVKEAVLPFSKFPG 910



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>CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1104

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 414  QFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSP--DQGIAAAKEL 241
            Q Y   AN      V F  + TG  P AK+ + + +GKT EEL          IA  + +
Sbjct: 866  QVYILEANPRASRTVPFVSKATGV-PLAKLASLIMSGKTLEELNFTQEVIPSHIAVKEAV 924

Query: 240  LRQNKLPG 217
            L  NK PG
Sbjct: 925  LPFNKFPG 932



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>KPRS_BACSU (P14193) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 317

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 366 FYDRQTGYYPGAKVLASLQTGKTTEELGLLSPDQ-GIAAAKELLRQNKLP 220
           F+D    +  G  +L     GK  E++ ++SPD  G+  A++L  + K P
Sbjct: 143 FFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLADRLKAP 192



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>CARB_ARCFU (O28994) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1076

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = -2

Query: 480  TVQRYYRALWARYSRVIDYVNFQF-------YGYGANTDVQTYVMFYDRQTGYYPGAKVL 322
            T+  Y R L A    V+  +N Q+       Y   AN      V F  + TG  P AK+ 
Sbjct: 809  TIVDYTRKL-ALALNVVGLINIQYAVKDGKVYVLEANPRASRTVPFVSKATGI-PLAKIA 866

Query: 321  ASLQTGKTTEELGL 280
            A L  GK   ELG+
Sbjct: 867  AKLMMGKKLRELGV 880



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>SYH_SYMTH (Q67LN9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 432

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 435 VIDYVNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLA 319
           +++YV+   +G GA TD+ T  MF     G  P A+ +A
Sbjct: 49  MVEYVDLFIHGVGATTDIVTKEMFNITPRGDDPDARRMA 87



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>CARB_THET2 (P96495) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1028

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -2

Query: 423  VNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKTTEELGL--LSPDQGIAAA 250
            V  + Y   AN      V F  +  G  P AK+ A +  GKT +ELG+  L P     AA
Sbjct: 829  VGEEVYVLEANPRASRTVPFVSKAIGV-PLAKLAALIAVGKTLKELGVRDLDPVPPYYAA 887

Query: 249  KELL 238
            KE++
Sbjct: 888  KEVV 891



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>FTHS_THEMA (Q9X287) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 542

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 405 GYGANTDVQTYVMFYDRQTGYYPGAKVLAS 316
           G+GA+   + ++ F  R  G+YP A VL +
Sbjct: 288 GFGADLGAEKFIDFVSRVGGFYPNAAVLVA 317



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>ASPM_SAGLB (P62295) Abnormal spindle-like microcephaly-associated protein|
            homolog (Fragment)
          Length = 1527

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 480  TVQRYYRALWARYSRVIDYVNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGK 301
            ++QR YR L A +++ +  +   + G+    D+Q   +   R   +Y   +     QT K
Sbjct: 1247 SIQRRYRKLTAVHTQAVICIQSYYRGFKVRRDIQNMHLAATRIQSFYRMHRAKVDYQTKK 1306

Query: 300  T 298
            T
Sbjct: 1307 T 1307



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>AKIB1_MOUSE (Q6ZPS6) Ankyrin repeat and IBR domain-containing protein 1|
           (Fragment)
          Length = 1087

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 157 GLIGELVVALLGAVRRPDEEPRQLVLPQQLLGRGDALVR 273
           G IG  + + L +V R  E PR  +   +LL  GD+L+R
Sbjct: 883 GAIGSSLPSRLDSVPRSTESPRAALSSSELLELGDSLMR 921


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,818,733
Number of Sequences: 219361
Number of extensions: 885972
Number of successful extensions: 2193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2191
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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