>TOP2_MIMIV (Q5UQE6) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
          Length = 1263

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 166 TKLYPTNCMSVITGTGGLLLNPHPQTLQP 252
           TK+YP N   +I     LL N +P+T++P
Sbjct: 885 TKIYPCNPRDIIANIKRLLTNENPKTMKP 913

>POLG_JAEVJ (P32886) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3432

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 212  GVCC*TPTPKPCSRADTGVG 271
            GV   TP+PKPCS+ DT  G
Sbjct: 1506 GVFWDTPSPKPCSKGDTTTG 1525

>POLG_JAEV5 (P19110) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3432

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 212  GVCC*TPTPKPCSRADTGVG 271
            GV   TP+PKPCS+ DT  G
Sbjct: 1506 GVFWDTPSPKPCSKGDTTTG 1525

>POLG_JAEV1 (P27395) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3432

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 212  GVCC*TPTPKPCSRADTGVG 271
            GV   TP+PKPCS+ DT  G
Sbjct: 1506 GVFWDTPSPKPCSKGDTTTG 1525

>MSRB_RALSO (Q8XYL1) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)|
          Length = 128

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 215 VCC*TPTPKPCSRADTGVGWP 277
           VCC TP  +  ++ D G GWP
Sbjct: 47  VCCGTPLFESSTKFDAGCGWP 67

>MSRB_SYNEL (Q8DJK9) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)|
          Length = 135

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 215 VCC*TPTPKPCSRADTGVGWP 277
           VCC TP  +  ++ D+G GWP
Sbjct: 48  VCCGTPLFRSETKYDSGTGWP 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,718,971
Number of Sequences: 219361
Number of extensions: 922884
Number of successful extensions: 2092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2092
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)