ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF220602.1| Lycopersicon pimpinellifolium Rio Grande 76R Pto ... 42 0.93
2gb|U23440.1|TTU23440 Tetrahymena thermophila RP internal deletio... 42 0.93
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
5dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
6dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
7dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
8dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
9dbj|AK070038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.93
10gb|AY853716.1| Uncultured bacteriophage clone 76, genomic sequence 40 3.7
11ref|XM_420409.1| PREDICTED: Gallus gallus similar to SET domain-... 40 3.7
12gb|AC137981.2| Mus musculus BAC clone RP24-156N24 from chromosom... 40 3.7
13gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, co... 40 3.7
14gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome... 40 3.7
15emb|AJ850280.1| Vicia sativa partial LINE retrotransposon, clone... 40 3.7
16gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 3.7
17gb|AC100795.2| Homo sapiens chromosome 18, clone RP11-956K8, com... 40 3.7
18emb|CR523863.1| Gallus gallus finished cDNA, clone ChEST230n19 40 3.7
19gb|AF234581.1|AF234581 Acanthobrahmaea europaea dopa decarboxyla... 40 3.7
20gb|AC046202.5| Homo sapiens chromosome 18, clone RP11-318I15, co... 40 3.7
21gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, com... 40 3.7
22gb|AC119900.7| Mus musculus chromosome 8, clone RP24-235K6, comp... 40 3.7
23emb|AL935289.4| Zebrafish DNA sequence from clone CH211-232C12, ... 40 3.7

>gb|AF220602.1| Lycopersicon pimpinellifolium Rio Grande 76R Pto locus, complete
             sequence
          Length = 60831

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   gtacaaaattatatccaacaa 184
             |||||||||||||||||||||
Sbjct: 46338 gtacaaaattatatccaacaa 46318



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>gb|U23440.1|TTU23440 Tetrahymena thermophila RP internal deletion sequence
          Length = 2779

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 aaaattatatccaacaaactg 188
           |||||||||||||||||||||
Sbjct: 26  aaaattatatccaacaaactg 6



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 165      tacaaaattatatccaacaaa 185
                |||||||||||||||||||||
Sbjct: 24977122 tacaaaattatatccaacaaa 24977142



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 246     gcagccgcgccgacaccggcg 266
               |||||||||||||||||||||
Sbjct: 4690553 gcagccgcgccgacaccggcg 4690533



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     aaagttaaccaacaaccaaac 43
              |||||||||||||||||||||
Sbjct: 749186 aaagttaaccaacaaccaaac 749166



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>dbj|AP004733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0023I22
          Length = 170029

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 165   tacaaaattatatccaacaaa 185
             |||||||||||||||||||||
Sbjct: 29455 tacaaaattatatccaacaaa 29475



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>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0530H05
          Length = 145952

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 165   tacaaaattatatccaacaaa 185
             |||||||||||||||||||||
Sbjct: 71677 tacaaaattatatccaacaaa 71697



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>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1212_B09
          Length = 130728

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    aaagttaaccaacaaccaaac 43
             |||||||||||||||||||||
Sbjct: 26386 aaagttaaccaacaaccaaac 26366



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>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0698A06
          Length = 156514

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 246   gcagccgcgccgacaccggcg 266
             |||||||||||||||||||||
Sbjct: 53152 gcagccgcgccgacaccggcg 53132



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>dbj|AK070038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035D03, full
           insert sequence
          Length = 1277

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 246 gcagccgcgccgacaccggcg 266
           |||||||||||||||||||||
Sbjct: 900 gcagccgcgccgacaccggcg 880



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>gb|AY853716.1| Uncultured bacteriophage clone 76, genomic sequence
          Length = 2604

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  ccttgcagccgcgccgacac 261
            ||||||||||||||||||||
Sbjct: 1669 ccttgcagccgcgccgacac 1650



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>ref|XM_420409.1| PREDICTED: Gallus gallus similar to SET domain-containing protein
           7; histone H3-lysine 4-specific methyltransferase;
           H3-K4-HMTase; histone H3-K4 methyltransferase
           (LOC422443), mRNA
          Length = 1281

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 173 tatatccaacaaactgcatgtcgg 196
           ||||||||||||||| ||||||||
Sbjct: 464 tatatccaacaaactccatgtcgg 441



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>gb|AC137981.2| Mus musculus BAC clone RP24-156N24 from chromosome 10, complete
             sequence
          Length = 151463

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   aaaattatatccaacaaact 187
             ||||||||||||||||||||
Sbjct: 31887 aaaattatatccaacaaact 31906



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>gb|AC100727.10| Mus musculus chromosome 1, clone RP24-278K16, complete sequence
          Length = 170056

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tcgattcaaagttaaccaac 35
             ||||||||||||||||||||
Sbjct: 82267 tcgattcaaagttaaccaac 82248



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>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence
          Length = 245623

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   aaaattatatccaacaaact 187
             ||||||||||||||||||||
Sbjct: 31229 aaaattatatccaacaaact 31210



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>emb|AJ850280.1| Vicia sativa partial LINE retrotransposon, clone TvsL29
          Length = 543

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 gtacaaaattatatccaaca 183
           ||||||||||||||||||||
Sbjct: 186 gtacaaaattatatccaaca 205



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 179     caacaaactgcatgtcggtc 198
               ||||||||||||||||||||
Sbjct: 3421667 caacaaactgcatgtcggtc 3421686



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>gb|AC100795.2| Homo sapiens chromosome 18, clone RP11-956K8, complete sequence
          Length = 193569

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   ctaaacccccacccccaaac 242
             ||||||||||||||||||||
Sbjct: 71655 ctaaacccccacccccaaac 71674



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>emb|CR523863.1| Gallus gallus finished cDNA, clone ChEST230n19
          Length = 1353

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 173 tatatccaacaaactgcatgtcgg 196
           ||||||||||||||| ||||||||
Sbjct: 468 tatatccaacaaactccatgtcgg 445



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>gb|AF234581.1|AF234581 Acanthobrahmaea europaea dopa decarboxylase mRNA, partial cds
          Length = 709

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  tcaaagttaaccaacaacca 40
           ||||||||||||||||||||
Sbjct: 612 tcaaagttaaccaacaacca 593



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>gb|AC046202.5| Homo sapiens chromosome 18, clone RP11-318I15, complete sequence
          Length = 179210

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    ctaaacccccacccccaaac 242
              ||||||||||||||||||||
Sbjct: 162364 ctaaacccccacccccaaac 162383



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>gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, complete sequence
          Length = 159520

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   cccccacccccaaaccttgc 247
             ||||||||||||||||||||
Sbjct: 97360 cccccacccccaaaccttgc 97341



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>gb|AC119900.7| Mus musculus chromosome 8, clone RP24-235K6, complete sequence
          Length = 174540

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   ctaaacccccacccccaaac 242
             ||||||||||||||||||||
Sbjct: 97718 ctaaacccccacccccaaac 97699



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>emb|AL935289.4| Zebrafish DNA sequence from clone CH211-232C12, complete sequence
          Length = 154174

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   aaacccccacccccaaacct 244
             ||||||||||||||||||||
Sbjct: 85141 aaacccccacccccaaacct 85122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,953,453
Number of Sequences: 3902068
Number of extensions: 2953453
Number of successful extensions: 59438
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59324
Number of HSP's gapped (non-prelim): 114
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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