ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A ... 30 1.8
2DEOC_PHOLL (Q7N932) Deoxyribose-phosphate aldolase (EC 4.1.2.4) ... 30 1.8
3FZD5_XENLA (P58421) Frizzled 5 precursor (Frizzled-5) (Fz-5) (Xfz5) 30 1.8
4CDK10_HUMAN (Q15131) Cell division protein kinase 10 (EC 2.7.11.... 30 3.1
5LAMA1_MOUSE (P19137) Laminin alpha-1 chain precursor (Laminin A ... 29 4.0
6V2A_CMVMB (Q66145) RNA-directed RNA polymerase 2A (EC 2.7.7.48) ... 28 6.9
7V2A_CMVB (Q66136) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (... 28 6.9
8HIS82_METCA (Q608S3) Histidinol-phosphate aminotransferase 2 (EC... 28 6.9
9V2A_CMVII (Q83262) RNA-directed RNA polymerase 2A (EC 2.7.7.48) ... 28 9.0

>LAMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A chain)|
          Length = 3075

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 150 VAHTNCRVCQCFVQGNHHSSAFELIHACEC 61
           V   NCR C+C V+G+H +        C+C
Sbjct: 894 VTAKNCRACECHVKGSHSAVCHLETGLCDC 923



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>DEOC_PHOLL (Q7N932) Deoxyribose-phosphate aldolase (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)
          Length = 259

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 359 ACSVSLGESDTLIARIDRRSTVVSALLGKNACSVTVNAGIDY 234
           AC V+  E+D L+  I     +  A L + A  +++NAG D+
Sbjct: 124 ACKVACAEADVLLKVIIETGELKEASLIRKASEISINAGADF 165



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>FZD5_XENLA (P58421) Frizzled 5 precursor (Frizzled-5) (Fz-5) (Xfz5)|
          Length = 559

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 129 VCQCFVQGNHHSSAFELIHACECDDVKQRF*SDSGMF 19
           V  C++   H+   +E  H C C   KQR+  D  +F
Sbjct: 449 VVACYIYEQHYREHWEKTHNCSCPGDKQRYRPDYAVF 485



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>CDK10_HUMAN (Q15131) Cell division protein kinase 10 (EC 2.7.11.22)|
           (Serine/threonine-protein kinase PISSLRE)
          Length = 360

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 198 DALPMTHHSSLLLLPRVAHTNCRVCQCFVQGNHHSSAFELIHACECD 58
           D +P++    + LL R+ H N    +  V GNH  S F ++  CE D
Sbjct: 77  DGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQD 123



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>LAMA1_MOUSE (P19137) Laminin alpha-1 chain precursor (Laminin A chain)|
          Length = 3084

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 156  PRVAHTNCRVCQCFVQGNHHSSAFELIHACEC 61
            PR A  +C+ C C  QG+ HS        C C
Sbjct: 1506 PRAAGGSCQTCDCNPQGSVHSDCDRASGQCVC 1537



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>V2A_CMVMB (Q66145) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 857

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 171 SLLLLPRVAHTNCRVCQCFVQGNHHSSAFELIHACECDDVK 49
           +LLL PR +H   +  +  V   +  S F     CE DDV+
Sbjct: 129 ALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYSEECEADDVQ 169



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>V2A_CMVB (Q66136) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 857

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 171 SLLLLPRVAHTNCRVCQCFVQGNHHSSAFELIHACECDDVK 49
           +LLL PR +H   +  +  V   +  S F     CE DDV+
Sbjct: 129 ALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYSEECEADDVQ 169



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>HIS82_METCA (Q608S3) Histidinol-phosphate aminotransferase 2 (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase 2)
          Length = 371

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 380 TGSYHDGACSVSLGES-DTLIARIDRRSTVVSALLGKNACSVTVNAGIDYAFIVAL---- 216
           T   HDG+     G   +T++ R+D  + VV      N     +  G  Y+F+ AL    
Sbjct: 135 TAPAHDGSRGPRFGHDLETMLERVDPDTRVVFIANPNNPTGTLLGRGELYSFLAALPEHV 194

Query: 215 AVVLDEMHYQ 186
             V+DE +++
Sbjct: 195 IAVVDEAYFE 204



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>V2A_CMVII (Q83262) RNA-directed RNA polymerase 2A (EC 2.7.7.48) (protein 2A)|
          Length = 857

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 171 SLLLLPRVAHTNCRVCQCFVQGNHHSSAFELIHACECDDVK 49
           +LLL PR +H   +  +  V   +  S F     CE DD++
Sbjct: 129 ALLLAPRTSHRTMKCFEDLVAAIYTKSDFYYSEECEADDIQ 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,387,006
Number of Sequences: 219361
Number of extensions: 737251
Number of successful extensions: 1979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1979
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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