ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK071618.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 6e-77
2ref|XM_470102.1| Oryza sativa (japonica cultivar-group), mRNA 165 1e-37
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 165 1e-37
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 165 1e-37
5gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 165 1e-37
6ref|XM_755400.1| Ustilago maydis 521 hypothetical protein (UM043... 50 0.006
7emb|BX324226.16| Zebrafish DNA sequence from clone DKEY-202B10 i... 44 0.37
8gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.4
9ref|XM_791741.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.4
10gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 42 1.4
11gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.4
12gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.7
13gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.7
14ref|XM_593953.2| PREDICTED: Bos taurus similar to CG12002-PA, is... 40 5.7
15emb|CR936259.1| Natronomonas pharaonis DSM 2160 plasmid PL23 com... 40 5.7
16ref|XM_567335.1| Cryptococcus neoformans var. neoformans JEC21 6... 40 5.7
17gb|AY129338.1| Mycobacteriophage Omega, complete sequence 40 5.7
18emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 5.7
19gb|AE011991.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.7
20gb|AE012357.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.7
21gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.7
22gb|AY129330.1| Mycobacteriopahge Che8, complete sequence 40 5.7
23gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.7
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
26gb|AF236054.1|AF236054 Rattus norvegicus liver regeneration-rela... 40 5.7
27dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.7
28emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, co... 40 5.7
29emb|AL840634.16| Zebrafish DNA sequence from clone CH211-4P8 in ... 40 5.7
30dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
31gb|AE005134.1| Halobacterium sp. NRC-1 section 165 of 170 of the... 40 5.7
32emb|AL731859.12| Zebrafish DNA sequence from clone BUSM1-12G7 in... 40 5.7
33gb|AY105074.1| Zea mays PCO087822 mRNA sequence 40 5.7
34gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.7
35emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.7
36gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
37emb|BX276100.4|CNS09S4X Oryza sativa chromosome 12, . Partial se... 40 5.7

>dbj|AK071618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104J18, full
           insert sequence
          Length = 916

 Score =  295 bits (149), Expect = 6e-77
 Identities = 212/233 (90%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 662

                                                                       
Query: 253 acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312
           |||||||||||| | |||||||| ||||||||||||||  ||||| || | || ||||||
Sbjct: 661 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 602

                                                                       
Query: 313 atcctggcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtag 372
           ||| | ||||||| |||||| || |||||||||||||||| |||||||||||||||||||
Sbjct: 601 atctttgcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtag 542

                                                                
Query: 373 ctgccggtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425
           ||||||||||  ||||||||   ||||||||||||||||||||||||||||||
Sbjct: 541 ctgccggtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 489



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>ref|XM_470102.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 807

 Score =  165 bits (83), Expect = 1e-37
 Identities = 113/123 (91%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 735

                                                                       
Query: 253 acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312
           |||||||||||| | |||||||| ||||||||||||||  ||||| || | || ||||||
Sbjct: 734 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 675

              
Query: 313 atc 315
           |||
Sbjct: 674 atc 672



 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Minus

                                                                       
Query: 319 gcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtagctgccg 378
           ||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 557 gcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtagctgccg 498

                                                          
Query: 379 gtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425
           ||||  ||||||||   ||||||||||||||||||||||||||||||
Sbjct: 497 gtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 451



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  165 bits (83), Expect = 1e-37
 Identities = 113/123 (91%)
 Strand = Plus / Plus

                                                                            
Query: 193      tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 33941403 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 33941462

                                                                            
Query: 253      acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312
                |||||||||||| | |||||||| ||||||||||||||  ||||| || | || ||||||
Sbjct: 33941463 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 33941522

                   
Query: 313      atc 315
                |||
Sbjct: 33941523 atc 33941525



 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                            
Query: 319      gcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtagctgccg 378
                ||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 33941640 gcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtagctgccg 33941699

                                                               
Query: 379      gtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425
                ||||  ||||||||   ||||||||||||||||||||||||||||||
Sbjct: 33941700 gtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 33941746



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  165 bits (83), Expect = 1e-37
 Identities = 113/123 (91%)
 Strand = Plus / Plus

                                                                            
Query: 193      tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 34031875 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 34031934

                                                                            
Query: 253      acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312
                |||||||||||| | |||||||| ||||||||||||||  ||||| || | || ||||||
Sbjct: 34031935 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 34031994

                   
Query: 313      atc 315
                |||
Sbjct: 34031995 atc 34031997



 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                            
Query: 319      gcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtagctgccg 378
                ||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 34032112 gcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtagctgccg 34032171

                                                               
Query: 379      gtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425
                ||||  ||||||||   ||||||||||||||||||||||||||||||
Sbjct: 34032172 gtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 34032218



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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
              sequence
          Length = 172337

 Score =  165 bits (83), Expect = 1e-37
 Identities = 113/123 (91%)
 Strand = Plus / Minus

                                                                          
Query: 193    tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252
              ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 116288 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 116229

                                                                          
Query: 253    acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312
              |||||||||||| | |||||||| ||||||||||||||  ||||| || | || ||||||
Sbjct: 116228 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 116169

                 
Query: 313    atc 315
              |||
Sbjct: 116168 atc 116166



 Score =  141 bits (71), Expect = 2e-30
 Identities = 98/107 (91%)
 Strand = Plus / Minus

                                                                          
Query: 319    gcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtagctgccg 378
              ||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 116051 gcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtagctgccg 115992

                                                             
Query: 379    gtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425
              ||||  ||||||||   ||||||||||||||||||||||||||||||
Sbjct: 115991 gtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 115945



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>ref|XM_755400.1| Ustilago maydis 521 hypothetical protein (UM04346.1) partial mRNA
          Length = 3729

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 321  gatgagggtgtcggattcgccgagggaga 349
            |||||||||||||||||||| ||||||||
Sbjct: 1746 gatgagggtgtcggattcgctgagggaga 1718



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>emb|BX324226.16| Zebrafish DNA sequence from clone DKEY-202B10 in linkage group 5,
             complete sequence
          Length = 121419

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 36    atcaaaatctctgtttcacatc 57
             ||||||||||||||||||||||
Sbjct: 81538 atcaaaatctctgtttcacatc 81517



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 207     gacgacggcgagcgcgacgatgaag 231
               |||||||||||||||| ||||||||
Sbjct: 1687968 gacgacggcgagcgcgtcgatgaag 1687944



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     ccagcagcgcgctgaccacg 297
               ||||||||||||||||||||
Sbjct: 2063446 ccagcagcgcgctgaccacg 2063465



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>ref|XM_791741.1| PREDICTED: Strongylocentrotus purpuratus similar to CG12773-PA
            (LOC592204), mRNA
          Length = 1779

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 230  aggcgtagtcgatgccggcgt 250
            |||||||||||||||||||||
Sbjct: 1159 aggcgtagtcgatgccggcgt 1139



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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 195    catctcgtcgaggacgacggcgagc 219
              ||||||||||||||||||| |||||
Sbjct: 240566 catctcgtcgaggacgacgacgagc 240590



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 234     gtagtcgatgccggcgttgacggtg 258
               |||| ||||||||||||||||||||
Sbjct: 2702875 gtagccgatgccggcgttgacggtg 2702899



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 239    cgatgccggcgttgacggtgacgc 262
              ||||||||||||||||| ||||||
Sbjct: 916640 cgatgccggcgttgacgatgacgc 916617



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     cgacggcgagcgcgacgatg 228
               ||||||||||||||||||||
Sbjct: 3486947 cgacggcgagcgcgacgatg 3486966



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>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tctgaacattcctgaatcgg 35
              ||||||||||||||||||||
Sbjct: 459351 tctgaacattcctgaatcgg 459332



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>ref|XM_593953.2| PREDICTED: Bos taurus similar to CG12002-PA, isoform A (LOC515860),
            mRNA
          Length = 6182

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 228  gaaggcgtagtcgatgccggcgttgacg 255
            |||||||| | |||||||||||||||||
Sbjct: 3186 gaaggcgttgacgatgccggcgttgacg 3159



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>emb|CR936259.1| Natronomonas pharaonis DSM 2160 plasmid PL23 complete genome
          Length = 23486

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   cgacggcgagcgcgacgatg 228
             ||||||||||||||||||||
Sbjct: 22573 cgacggcgagcgcgacgatg 22592



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>ref|XM_567335.1| Cryptococcus neoformans var. neoformans JEC21 60s ribosomal protein
           l20 (yl17) (CNJ01560) partial mRNA
          Length = 904

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  tctgaacattcctgaatcgg 35
           ||||||||||||||||||||
Sbjct: 652 tctgaacattcctgaatcgg 633



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>gb|AY129338.1| Mycobacteriophage Omega, complete sequence
          Length = 110865

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ggtgacgctgcaggcgttct 274
             ||||||||||||||||||||
Sbjct: 35659 ggtgacgctgcaggcgttct 35678



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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    cgaggacgacggcgagcgcg 222
              ||||||||||||||||||||
Sbjct: 219269 cgaggacgacggcgagcgcg 219250



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>gb|AE011991.1| Xanthomonas axonopodis pv. citri str. 306,  section 369 of 469 of the
            complete genome
          Length = 10153

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 278  ccagcagcgcgctgaccacggtgg 301
            ||||||||||| ||||||||||||
Sbjct: 9119 ccagcagcgcgatgaccacggtgg 9096



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>gb|AE012357.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 265
            of 460 of the complete genome
          Length = 10731

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  cgttcttgcccagcagcgcg 288
            ||||||||||||||||||||
Sbjct: 5439 cgttcttgcccagcagcgcg 5458



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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 278     ccagcagcgcgctgaccacggtgg 301
               |||||||| |||||||||||||||
Sbjct: 4034192 ccagcagcacgctgaccacggtgg 4034169



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>gb|AY129330.1| Mycobacteriopahge Che8, complete sequence
          Length = 59471

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ggtgacgctgcaggcgttct 274
             ||||||||||||||||||||
Sbjct: 21637 ggtgacgctgcaggcgttct 21656



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 269     cgttcttgcccagcagcgcg 288
               ||||||||||||||||||||
Sbjct: 1989044 cgttcttgcccagcagcgcg 1989025



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      ccacggtggagcggcggtcg 312
                ||||||||||||||||||||
Sbjct: 15512671 ccacggtggagcggcggtcg 15512652



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     cgtcgaggacgacggcgagc 219
               ||||||||||||||||||||
Sbjct: 7612369 cgtcgaggacgacggcgagc 7612350



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>gb|AF236054.1|AF236054 Rattus norvegicus liver regeneration-related protein 1 mRNA,
           complete cds
          Length = 1471

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  atgtatcaactcaaaagcag 92
           ||||||||||||||||||||
Sbjct: 923 atgtatcaactcaaaagcag 904



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     cgtcgaggacgacggcgagc 219
               ||||||||||||||||||||
Sbjct: 8061355 cgtcgaggacgacggcgagc 8061336



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 204     gaggacgacggcgagcgcga 223
               ||||||||||||||||||||
Sbjct: 1629401 gaggacgacggcgagcgcga 1629420



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>emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, complete sequence
          Length = 226343

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 77   atcaactcaaaagcagaggaatgg 100
            ||||||||||| ||||||||||||
Sbjct: 2800 atcaactcaaaggcagaggaatgg 2777



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>emb|AL840634.16| Zebrafish DNA sequence from clone CH211-4P8 in linkage group 9,
             complete sequence
          Length = 160566

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    atcaactcaaaagcagaggaatgg 100
             ||||||||||| ||||||||||||
Sbjct: 34633 atcaactcaaaggcagaggaatgg 34610



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>dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1145_E05
          Length = 101333

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   cgtcgaggacgacggcgagc 219
             ||||||||||||||||||||
Sbjct: 29129 cgtcgaggacgacggcgagc 29110



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>gb|AE005134.1| Halobacterium sp. NRC-1 section 165 of 170 of the complete genome
          Length = 11093

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 200  cgtcgaggacgacggcgagcgcgacgatgaag 231
            ||||||| ||| ||||||||||| ||||||||
Sbjct: 7683 cgtcgagtacgtcggcgagcgcgccgatgaag 7652



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>emb|AL731859.12| Zebrafish DNA sequence from clone BUSM1-12G7 in linkage group 9, complete
              sequence
          Length = 135052

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     atcaactcaaaagcagaggaatgg 100
              ||||||||||| ||||||||||||
Sbjct: 115526 atcaactcaaaggcagaggaatgg 115549



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>gb|AY105074.1| Zea mays PCO087822 mRNA sequence
          Length = 1219

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 203 cgaggacgacggcgagcgcgacga 226
           |||||||||||||||||| |||||
Sbjct: 401 cgaggacgacggcgagcgagacga 378



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     gacgacggcgagcgcgacga 226
               ||||||||||||||||||||
Sbjct: 3394850 gacgacggcgagcgcgacga 3394869



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     cgacggcgagcgcgacgatg 228
               ||||||||||||||||||||
Sbjct: 1564707 cgacggcgagcgcgacgatg 1564726



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      ccacggtggagcggcggtcg 312
                ||||||||||||||||||||
Sbjct: 15466953 ccacggtggagcggcggtcg 15466934



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>emb|BX276100.4|CNS09S4X Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0076H14
            of library OSJNBa from chromosome 12 of cultivar
            Nipponbare of ssp. japonica of Oryza sativa (rice),
            complete sequence
          Length = 53315

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  ccacggtggagcggcggtcg 312
            ||||||||||||||||||||
Sbjct: 6508 ccacggtggagcggcggtcg 6489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,825,563
Number of Sequences: 3902068
Number of extensions: 2825563
Number of successful extensions: 63377
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61972
Number of HSP's gapped (non-prelim): 1405
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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