Clone Name | rbart46e01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK071618.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104J18, full insert sequence Length = 916 Score = 295 bits (149), Expect = 6e-77 Identities = 212/233 (90%) Strand = Plus / Minus Query: 193 tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 721 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 662 Query: 253 acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312 |||||||||||| | |||||||| |||||||||||||| ||||| || | || |||||| Sbjct: 661 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 602 Query: 313 atcctggcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtag 372 ||| | ||||||| |||||| || |||||||||||||||| ||||||||||||||||||| Sbjct: 601 atctttgcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtag 542 Query: 373 ctgccggtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425 |||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 541 ctgccggtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 489
>ref|XM_470102.1| Oryza sativa (japonica cultivar-group), mRNA Length = 807 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 193 tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 794 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 735 Query: 253 acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312 |||||||||||| | |||||||| |||||||||||||| ||||| || | || |||||| Sbjct: 734 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 675 Query: 313 atc 315 ||| Sbjct: 674 atc 672 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 319 gcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtagctgccg 378 ||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 557 gcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtagctgccg 498 Query: 379 gtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425 |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 497 gtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 451
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Plus Query: 193 tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 33941403 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 33941462 Query: 253 acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312 |||||||||||| | |||||||| |||||||||||||| ||||| || | || |||||| Sbjct: 33941463 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 33941522 Query: 313 atc 315 ||| Sbjct: 33941523 atc 33941525 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 319 gcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtagctgccg 378 ||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 33941640 gcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtagctgccg 33941699 Query: 379 gtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425 |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 33941700 gtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 33941746
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Plus Query: 193 tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 34031875 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 34031934 Query: 253 acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312 |||||||||||| | |||||||| |||||||||||||| ||||| || | || |||||| Sbjct: 34031935 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 34031994 Query: 313 atc 315 ||| Sbjct: 34031995 atc 34031997 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Plus Query: 319 gcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtagctgccg 378 ||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 34032112 gcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtagctgccg 34032171 Query: 379 gtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425 |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 34032172 gtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 34032218
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 165 bits (83), Expect = 1e-37 Identities = 113/123 (91%) Strand = Plus / Minus Query: 193 tgcatctcgtcgaggacgacggcgagcgcgacgatgaaggcgtagtcgatgccggcgttg 252 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 116288 tgcatctcgtcgaggacgacgacgagcgcgacgatgaaggcgtagtcgatgccggcgttg 116229 Query: 253 acggtgacgctgcaggcgttcttgcccagcagcgcgctgaccacggtggagcggcggtcg 312 |||||||||||| | |||||||| |||||||||||||| ||||| || | || |||||| Sbjct: 116228 acggtgacgctgtatgcgttcttccccagcagcgcgctcgccacgctgaaccgccggtcg 116169 Query: 313 atc 315 ||| Sbjct: 116168 atc 116166 Score = 141 bits (71), Expect = 2e-30 Identities = 98/107 (91%) Strand = Plus / Minus Query: 319 gcgatgagggtgtcggattcgccgagggagacggagcaggcgccgtcgtggtagctgccg 378 ||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 116051 gcgatgacggtgtcagagtcgccgagggagacggcgcaggcgccgtcgtggtagctgccg 115992 Query: 379 gtgatccggaagtccggggcctgctcggcgtcgttgctggcgaggaa 425 |||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 115991 gtgacgcggaagtcgctggcctgctcggcgtcgttgctggcgaggaa 115945
>ref|XM_755400.1| Ustilago maydis 521 hypothetical protein (UM04346.1) partial mRNA Length = 3729 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 321 gatgagggtgtcggattcgccgagggaga 349 |||||||||||||||||||| |||||||| Sbjct: 1746 gatgagggtgtcggattcgctgagggaga 1718
>emb|BX324226.16| Zebrafish DNA sequence from clone DKEY-202B10 in linkage group 5, complete sequence Length = 121419 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 36 atcaaaatctctgtttcacatc 57 |||||||||||||||||||||| Sbjct: 81538 atcaaaatctctgtttcacatc 81517
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 207 gacgacggcgagcgcgacgatgaag 231 |||||||||||||||| |||||||| Sbjct: 1687968 gacgacggcgagcgcgtcgatgaag 1687944 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ccagcagcgcgctgaccacg 297 |||||||||||||||||||| Sbjct: 2063446 ccagcagcgcgctgaccacg 2063465
>ref|XM_791741.1| PREDICTED: Strongylocentrotus purpuratus similar to CG12773-PA (LOC592204), mRNA Length = 1779 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 aggcgtagtcgatgccggcgt 250 ||||||||||||||||||||| Sbjct: 1159 aggcgtagtcgatgccggcgt 1139
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence Length = 268433 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 195 catctcgtcgaggacgacggcgagc 219 ||||||||||||||||||| ||||| Sbjct: 240566 catctcgtcgaggacgacgacgagc 240590
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 234 gtagtcgatgccggcgttgacggtg 258 |||| |||||||||||||||||||| Sbjct: 2702875 gtagccgatgccggcgttgacggtg 2702899 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 cgatgccggcgttgacggtgacgc 262 ||||||||||||||||| |||||| Sbjct: 916640 cgatgccggcgttgacgatgacgc 916617
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cgacggcgagcgcgacgatg 228 |||||||||||||||||||| Sbjct: 3486947 cgacggcgagcgcgacgatg 3486966
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tctgaacattcctgaatcgg 35 |||||||||||||||||||| Sbjct: 459351 tctgaacattcctgaatcgg 459332
>ref|XM_593953.2| PREDICTED: Bos taurus similar to CG12002-PA, isoform A (LOC515860), mRNA Length = 6182 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 228 gaaggcgtagtcgatgccggcgttgacg 255 |||||||| | ||||||||||||||||| Sbjct: 3186 gaaggcgttgacgatgccggcgttgacg 3159
>emb|CR936259.1| Natronomonas pharaonis DSM 2160 plasmid PL23 complete genome Length = 23486 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cgacggcgagcgcgacgatg 228 |||||||||||||||||||| Sbjct: 22573 cgacggcgagcgcgacgatg 22592
>ref|XM_567335.1| Cryptococcus neoformans var. neoformans JEC21 60s ribosomal protein l20 (yl17) (CNJ01560) partial mRNA Length = 904 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tctgaacattcctgaatcgg 35 |||||||||||||||||||| Sbjct: 652 tctgaacattcctgaatcgg 633
>gb|AY129338.1| Mycobacteriophage Omega, complete sequence Length = 110865 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ggtgacgctgcaggcgttct 274 |||||||||||||||||||| Sbjct: 35659 ggtgacgctgcaggcgttct 35678
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 cgaggacgacggcgagcgcg 222 |||||||||||||||||||| Sbjct: 219269 cgaggacgacggcgagcgcg 219250
>gb|AE011991.1| Xanthomonas axonopodis pv. citri str. 306, section 369 of 469 of the complete genome Length = 10153 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 ccagcagcgcgctgaccacggtgg 301 ||||||||||| |||||||||||| Sbjct: 9119 ccagcagcgcgatgaccacggtgg 9096
>gb|AE012357.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 265 of 460 of the complete genome Length = 10731 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cgttcttgcccagcagcgcg 288 |||||||||||||||||||| Sbjct: 5439 cgttcttgcccagcagcgcg 5458
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 ccagcagcgcgctgaccacggtgg 301 |||||||| ||||||||||||||| Sbjct: 4034192 ccagcagcacgctgaccacggtgg 4034169
>gb|AY129330.1| Mycobacteriopahge Che8, complete sequence Length = 59471 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ggtgacgctgcaggcgttct 274 |||||||||||||||||||| Sbjct: 21637 ggtgacgctgcaggcgttct 21656
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgttcttgcccagcagcgcg 288 |||||||||||||||||||| Sbjct: 1989044 cgttcttgcccagcagcgcg 1989025
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ccacggtggagcggcggtcg 312 |||||||||||||||||||| Sbjct: 15512671 ccacggtggagcggcggtcg 15512652
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgtcgaggacgacggcgagc 219 |||||||||||||||||||| Sbjct: 7612369 cgtcgaggacgacggcgagc 7612350
>gb|AF236054.1|AF236054 Rattus norvegicus liver regeneration-related protein 1 mRNA, complete cds Length = 1471 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 atgtatcaactcaaaagcag 92 |||||||||||||||||||| Sbjct: 923 atgtatcaactcaaaagcag 904
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgtcgaggacgacggcgagc 219 |||||||||||||||||||| Sbjct: 8061355 cgtcgaggacgacggcgagc 8061336 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gaggacgacggcgagcgcga 223 |||||||||||||||||||| Sbjct: 1629401 gaggacgacggcgagcgcga 1629420
>emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, complete sequence Length = 226343 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 atcaactcaaaagcagaggaatgg 100 ||||||||||| |||||||||||| Sbjct: 2800 atcaactcaaaggcagaggaatgg 2777
>emb|AL840634.16| Zebrafish DNA sequence from clone CH211-4P8 in linkage group 9, complete sequence Length = 160566 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 atcaactcaaaagcagaggaatgg 100 ||||||||||| |||||||||||| Sbjct: 34633 atcaactcaaaggcagaggaatgg 34610
>dbj|AP004030.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_E05 Length = 101333 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgtcgaggacgacggcgagc 219 |||||||||||||||||||| Sbjct: 29129 cgtcgaggacgacggcgagc 29110
>gb|AE005134.1| Halobacterium sp. NRC-1 section 165 of 170 of the complete genome Length = 11093 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 200 cgtcgaggacgacggcgagcgcgacgatgaag 231 ||||||| ||| ||||||||||| |||||||| Sbjct: 7683 cgtcgagtacgtcggcgagcgcgccgatgaag 7652
>emb|AL731859.12| Zebrafish DNA sequence from clone BUSM1-12G7 in linkage group 9, complete sequence Length = 135052 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 atcaactcaaaagcagaggaatgg 100 ||||||||||| |||||||||||| Sbjct: 115526 atcaactcaaaggcagaggaatgg 115549
>gb|AY105074.1| Zea mays PCO087822 mRNA sequence Length = 1219 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 203 cgaggacgacggcgagcgcgacga 226 |||||||||||||||||| ||||| Sbjct: 401 cgaggacgacggcgagcgagacga 378
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gacgacggcgagcgcgacga 226 |||||||||||||||||||| Sbjct: 3394850 gacgacggcgagcgcgacga 3394869
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cgacggcgagcgcgacgatg 228 |||||||||||||||||||| Sbjct: 1564707 cgacggcgagcgcgacgatg 1564726
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ccacggtggagcggcggtcg 312 |||||||||||||||||||| Sbjct: 15466953 ccacggtggagcggcggtcg 15466934
>emb|BX276100.4|CNS09S4X Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0076H14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 53315 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ccacggtggagcggcggtcg 312 |||||||||||||||||||| Sbjct: 6508 ccacggtggagcggcggtcg 6489 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,825,563 Number of Sequences: 3902068 Number of extensions: 2825563 Number of successful extensions: 63377 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61972 Number of HSP's gapped (non-prelim): 1405 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)