Clone Name | rbart46d11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_481639.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1647 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 ||||||||||||||||| ||||| || || ||||||||||| |||||||||||||||||| Sbjct: 1311 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 1252 Query: 368 gtgatggcagaagc 381 ||||| || ||||| Sbjct: 1251 gtgatagcggaagc 1238 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Minus Query: 212 tactaactaactaagctctttattcaa 238 ||||| ||||||||||||||||||||| Sbjct: 1404 tactacctaactaagctctttattcaa 1378
>gb|DQ083199.1| Oryza sativa (indica cultivar-group) clone 5S11F12 mRNA sequence Length = 443 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 ||||||||||||||||| ||||| || || ||||||||||| |||||||||||||||||| Sbjct: 270 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 211 Query: 368 gtgatggcagaagc 381 ||||| || ||||| Sbjct: 210 gtgatagcggaagc 197 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Minus Query: 212 tactaactaactaagctctttattcaa 238 ||||| ||||||||||||||||||||| Sbjct: 363 tactacctaactaagctctttattcaa 337
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 ||||||||||||||||| ||||| || || ||||||||||| |||||||||||||||||| Sbjct: 14411413 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 14411354 Query: 368 gtgatggcagaagc 381 ||||| || ||||| Sbjct: 14411353 gtgatagcggaagc 14411340 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Minus Query: 212 tactaactaactaagctctttattcaa 238 ||||| ||||||||||||||||||||| Sbjct: 14411506 tactacctaactaagctctttattcaa 14411480
>dbj|AP005490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01 Length = 140261 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 ||||||||||||||||| ||||| || || ||||||||||| |||||||||||||||||| Sbjct: 6281 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 6222 Query: 368 gtgatggcagaagc 381 ||||| || ||||| Sbjct: 6221 gtgatagcggaagc 6208 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Minus Query: 212 tactaactaactaagctctttattcaa 238 ||||| ||||||||||||||||||||| Sbjct: 6374 tactacctaactaagctctttattcaa 6348
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0670E08 Length = 133106 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 ||||||||||||||||| ||||| || || ||||||||||| |||||||||||||||||| Sbjct: 55696 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 55637 Query: 368 gtgatggcagaagc 381 ||||| || ||||| Sbjct: 55636 gtgatagcggaagc 55623 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Minus Query: 212 tactaactaactaagctctttattcaa 238 ||||| ||||||||||||||||||||| Sbjct: 55789 tactacctaactaagctctttattcaa 55763
>dbj|AK070992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077K10, full insert sequence Length = 1647 Score = 91.7 bits (46), Expect = 2e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 ||||||||||||||||| ||||| || || ||||||||||| |||||||||||||||||| Sbjct: 1311 gggctgtcaactgcaagccccattgtattgagtccattgtcaacgtaaacagtcgagcca 1252 Query: 368 gtgatggcagaagc 381 ||||| || ||||| Sbjct: 1251 gtgatagcggaagc 1238 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Minus Query: 212 tactaactaactaagctctttattcaa 238 ||||| ||||||||||||||||||||| Sbjct: 1404 tactacctaactaagctctttattcaa 1378
>gb|BT016571.1| Zea mays clone Contig404 mRNA sequence Length = 1517 Score = 75.8 bits (38), Expect = 9e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 |||||||||| |||||| ||||| || || || |||||||| || |||||||||||||| Sbjct: 1178 gggctgtcaattgcaagccccattgtattgagcccattgtcaacataaacagtcgagccg 1119 Query: 368 gtgatggcagaagc 381 |||||||||||||| Sbjct: 1118 gtgatggcagaagc 1105
>emb|AJ003025.1|OSENOYLAC Oryza sativa mRNA for enoyl-ACP reductase Length = 1520 Score = 75.8 bits (38), Expect = 9e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 ||||||||||||||||| ||||| || || |||||||||| ||||| |||||||||||| Sbjct: 1148 gggctgtcaactgcaagccccattgtattgagtccattgtgaacgtacacagtcgagcca 1089 Query: 368 gtgatggcagaagc 381 ||||| || ||||| Sbjct: 1088 gtgatagcggaagc 1075
>gb|AY112451.1| Zea mays CL3046_1 mRNA sequence Length = 1482 Score = 75.8 bits (38), Expect = 9e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 308 gggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgagcca 367 |||||||||| |||||| ||||| || || || |||||||| || |||||||||||||| Sbjct: 1174 gggctgtcaattgcaagccccattgtattgagcccattgtcaacataaacagtcgagccg 1115 Query: 368 gtgatggcagaagc 381 |||||||||||||| Sbjct: 1114 gtgatggcagaagc 1101
>gb|AY106087.1| Zea mays PCO109463 mRNA sequence Length = 1496 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 305 gtggggctgtcaactgcaagacccatggtgttaagtccattgtcgacgtaaacagtcgag 364 ||||||||||||| |||||| ||||| ||||| || |||||||| ||||||| ||| || Sbjct: 1223 gtggggctgtcaagtgcaagtcccattgtgttgagcccattgtcaacgtaaatagttgaa 1164 Query: 365 ccagtgat 372 |||||||| Sbjct: 1163 ccagtgat 1156
>gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, complete sequence Length = 200450 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Plus Query: 158 cagccatcccctcttttttctcctgcc 184 ||||| ||||||||||||||||||||| Sbjct: 178821 cagccttcccctcttttttctcctgcc 178847
>gb|AC097360.2| Homo sapiens chromosome 3 clone RP11-344C13, complete sequence Length = 166349 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Plus Query: 158 cagccatcccctcttttttctcctgcc 184 ||||| ||||||||||||||||||||| Sbjct: 121280 cagccttcccctcttttttctcctgcc 121306
>gb|AC025056.5|AC025056 Homo sapiens chromosome 8, clone RP11-400G5, complete sequence Length = 166222 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 ctctttattcaacacaatcaag 248 |||||||||||||||||||||| Sbjct: 88371 ctctttattcaacacaatcaag 88350
>emb|AL118557.5|CNS01DRT Human chromosome 14 DNA sequence BAC R-1033H12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214175 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 caacagccatcccctctttttt 176 |||||||||||||||||||||| Sbjct: 81157 caacagccatcccctctttttt 81178
>dbj|AB009777.1| Homo sapiens gene for osteonidogen, promoter region Length = 5332 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 155 caacagccatcccctctttttt 176 |||||||||||||||||||||| Sbjct: 510 caacagccatcccctctttttt 489
>gb|AC157562.8| Mus musculus chromosome 1, clone RP24-304A3, complete sequence Length = 120189 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 acagtatcagcaacaacaaca 90 ||||||||||||||||||||| Sbjct: 53372 acagtatcagcaacaacaaca 53352
>emb|AL450345.6| Human DNA sequence from clone RP11-300M24 on chromosome 6 Contains a novel gene, complete sequence Length = 183342 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 acagtatcagcaacaacaaca 90 ||||||||||||||||||||| Sbjct: 48741 acagtatcagcaacaacaaca 48721
>emb|AL158214.33| Human DNA sequence from clone RP11-543E8 on chromosome 1q42.2-43 Contains a novel gene, a ribosomal protein S24 (RPS24) pseudogene, the COG2 gene for component of oligomeric golgi complex 2, the 3' end of the AGT gene for angiotensinogen (serine (or cysteine) proteinase inhibitor,clade A (alpha-1 antiproteinase, antitrypsin), member 8) and a CpG island, complete sequence Length = 181175 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ttttctcctgccctcagctct 193 ||||||||||||||||||||| Sbjct: 70400 ttttctcctgccctcagctct 70380
>gb|AC079320.9| Homo sapiens chromosome 5, clone RP11-729C24, complete sequence Length = 160042 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctcttttttctcctgccctc 187 ||||||||||||||||||||| Sbjct: 33748 cctcttttttctcctgccctc 33728
>gb|AC116366.2| Homo sapiens chromosome 5 clone RP11-89G4, complete sequence Length = 169385 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctcttttttctcctgccctc 187 ||||||||||||||||||||| Sbjct: 98711 cctcttttttctcctgccctc 98691
>gb|AC156804.2| Pan troglodytes BAC clone CH251-371A18 from chromosome unknown, complete sequence Length = 232130 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctcttttttctcctgccctc 187 ||||||||||||||||||||| Sbjct: 95165 cctcttttttctcctgccctc 95145
>gb|AC005386.1|AC005386 citb_57_l_21, complete sequence Length = 196361 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ttttctcctgccctcagctct 193 ||||||||||||||||||||| Sbjct: 163508 ttttctcctgccctcagctct 163488
>gb|L81766.1|HSL81766 Homo sapiens (subclone 9_d11 from P1 H18) DNA sequence, complete sequence Length = 4220 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 cctcttttttctcctgccctc 187 ||||||||||||||||||||| Sbjct: 3882 cctcttttttctcctgccctc 3902
>gb|L05072.1|HUMIFNRF1A Homo sapiens interferon regulatory factor 1 gene, complete cds Length = 7721 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 cctcttttttctcctgccctc 187 ||||||||||||||||||||| Sbjct: 3606 cctcttttttctcctgccctc 3626
>ref|XM_705619.1| Candida albicans SC5314 hypothetical protein (CaO19.174), mRNA Length = 1737 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tatcagcaacaacaacatcc 93 |||||||||||||||||||| Sbjct: 10 tatcagcaacaacaacatcc 29
>ref|XM_705605.1| Candida albicans SC5314 hypothetical protein (CaO19.7807), mRNA Length = 2298 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tatcagcaacaacaacatcc 93 |||||||||||||||||||| Sbjct: 568 tatcagcaacaacaacatcc 587
>gb|DQ121061.1| Hucho taimen clone ZA-56 microsatellite sequence Length = 726 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cagtatcagcaacaacaaca 90 |||||||||||||||||||| Sbjct: 498 cagtatcagcaacaacaaca 517
>emb|AL031744.8|PFMAL1P1 Plasmodium falciparum DNA from MAL1P1, complete sequence Length = 124330 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ccatcccctcttttttctcc 180 |||||||||||||||||||| Sbjct: 13448 ccatcccctcttttttctcc 13429
>gb|AC087772.5|AC087772 Genomic Sequence for Mus musculus, clone RP23-326L17, complete sequence Length = 218905 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgggccaaagaggtggtgct 132 |||||||||||||||||||| Sbjct: 108792 tgggccaaagaggtggtgct 108811
>gb|AC020968.3| Mus musculus chromosome 18 clone RP23-193O23, complete sequence Length = 199704 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgggccaaagaggtggtgct 132 |||||||||||||||||||| Sbjct: 54397 tgggccaaagaggtggtgct 54416
>emb|BX649333.9| Zebrafish DNA sequence from clone DKEY-200F3 in linkage group 4, complete sequence Length = 273859 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ccatcccctcttttttctcc 180 |||||||||||||||||||| Sbjct: 48803 ccatcccctcttttttctcc 48822
>emb|AJ330610.1|HSA330610 Homo sapiens genomic sequence surrounding NotI site, clone HSJ4P-E15RS Length = 676 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 acaaatgggccaaagaggtggtgc 131 |||||||||||||||| ||||||| Sbjct: 524 acaaatgggccaaagaagtggtgc 501
>emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in linkage group 1, complete sequence Length = 167671 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ccatcccctcttttttctcc 180 |||||||||||||||||||| Sbjct: 117201 ccatcccctcttttttctcc 117182
>dbj|AP004250.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47K21, TM0260, complete sequence Length = 79947 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cagtatcagcaacaacaaca 90 |||||||||||||||||||| Sbjct: 74546 cagtatcagcaacaacaaca 74527
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 atcagcaacaacaacatccg 94 |||||||||||||||||||| Sbjct: 802673 atcagcaacaacaacatccg 802692 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,010,908 Number of Sequences: 3902068 Number of extensions: 4010908 Number of successful extensions: 84949 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84854 Number of HSP's gapped (non-prelim): 95 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)