Clone Name | rbart46d08 |
---|---|
Clone Library Name | barley_pub |
>gb|AY104299.1| Zea mays PCO075569 mRNA sequence Length = 2139 Score = 93.7 bits (47), Expect = 4e-16 Identities = 133/161 (82%), Gaps = 3/161 (1%) Strand = Plus / Minus Query: 150 acttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgcgg 209 ||||||||||| ||||||||||| || ||||| ||| ||||| ||||| || || ||| Sbjct: 1955 acttacaatgacgaggggatgtgctg---gagcaacacatatccagagaggacagctcgg 1899 Query: 210 tcgcgctctttcgccttggtctggtactgcaccctctggccatcgacccacatctcggtg 269 | ||||| || ||||| || ||||| |||||| ||||||| || | ||||||||| ||| Sbjct: 1898 ttccgctccttggccttcgtttggtagtgcaccttctggccgtcaagccacatctcagtg 1839 Query: 270 accagcgtttccccggggtagacgtgcagcaggaaccggcc 310 || |||||||||||||||||||||||| ||||| ||||| Sbjct: 1838 gacaacgtttccccggggtagacgtgcagaaggaaacggcc 1798
>dbj|AK071684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B15, full insert sequence Length = 1256 Score = 71.9 bits (36), Expect = 1e-09 Identities = 134/166 (80%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 148 gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 207 ||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||| Sbjct: 1041 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 985 Query: 208 ggtcgcgctctttcgccttggtctggtactgcaccctctggccatcgacccacatctcgg 267 ||| ||| || || |||| || || || ||||||||||||| | || |||||| || | Sbjct: 984 ggttgcgttccttgacctttgtttgataaagcaccctctggccttggagccacatttcag 925 Query: 268 tgaccagcgtttccccggggtagacgtgcagcaggaaccggccaaa 313 |||| | ||||| || || ||||| ||||| || || |||||||| Sbjct: 924 tgactaaagtttctccaggatagacatgcagaagaaaacggccaaa 879
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 65.9 bits (33), Expect = 9e-08 Identities = 56/63 (88%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 148 gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 207 ||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||| Sbjct: 21236823 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 21236879 Query: 208 ggt 210 ||| Sbjct: 21236880 ggt 21236882
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 65.9 bits (33), Expect = 9e-08 Identities = 56/63 (88%), Gaps = 3/63 (4%) Strand = Plus / Plus Query: 148 gcacttacaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgc 207 ||||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||| Sbjct: 107580 gcacttacaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgc 107636 Query: 208 ggt 210 ||| Sbjct: 107637 ggt 107639
>ref|XM_450198.1| Oryza sativa (japonica cultivar-group), mRNA Length = 330 Score = 54.0 bits (27), Expect = 3e-04 Identities = 50/57 (87%), Gaps = 3/57 (5%) Strand = Plus / Minus Query: 154 acaatgatgaggggatgtgttgtttgagcagcacgtatccggagagcacggcgcggt 210 ||||||||||||||||| |||||||||| ||| ||||| || ||||||||||||| Sbjct: 301 acaatgatgaggggatg---tgtttgagcaacacatatccagaaagcacggcgcggt 248
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 46.1 bits (23), Expect = 0.084 Identities = 35/39 (89%) Strand = Plus / Minus Query: 248 gccatcgacccacatctcggtgaccagcgtttccccggg 286 |||||||||||||||||||||| |||||| || ||||| Sbjct: 297779 gccatcgacccacatctcggtgcgcagcgtatcgccggg 297741
>gb|AC119982.6| Mus musculus chromosome 19, clone RP24-498L9, complete sequence Length = 177924 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 atatcttggcatagtttacaa 53 ||||||||||||||||||||| Sbjct: 157927 atatcttggcatagtttacaa 157947
>gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 map 19, complete sequence Length = 199006 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 atatcttggcatagtttacaa 53 ||||||||||||||||||||| Sbjct: 180265 atatcttggcatagtttacaa 180245
>ref|NM_064776.2| Caenorhabditis elegans W10C4.1 (W10C4.1) mRNA, complete cds Length = 672 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 cgttgcaaaacgacttgatga 360 ||||||||||||||||||||| Sbjct: 338 cgttgcaaaacgacttgatga 318
>gb|AC006698.1| Caenorhabditis elegans cosmid W10C4, complete sequence Length = 25647 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 cgttgcaaaacgacttgatga 360 ||||||||||||||||||||| Sbjct: 10267 cgttgcaaaacgacttgatga 10287
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cgtgcagcaggaaccggcca 311 |||||||||||||||||||| Sbjct: 1551424 cgtgcagcaggaaccggcca 1551405
>gb|AY294226.1| Uncultured bacterium cosmid gbiox603r, complete sequence Length = 40150 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcacagccgctggatccccg 341 |||||||||||||||||||| Sbjct: 25027 gcacagccgctggatccccg 25008
>emb|AL590244.5| Human DNA sequence from clone RP11-28H17 on chromosome 6 Contains the 3' end of a novel gene, part of a novel gene, a novel gene, cytochrome P450 pseudogene and the 3' end of the RHAG gene for Rhesus blood group-associated glycoprotein (RH50A), complete sequence Length = 133579 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 tgatgaggggatgtgttgtttgag 181 ||||||||||||||| |||||||| Sbjct: 114491 tgatgaggggatgtgatgtttgag 114514
>emb|AL021331.1|HS366N23 Human DNA sequence from clone RP3-366N23 on chromosome 6q27 Contains the UNC93A gene for unc-93 homolog A (C. elegans), the gene for NYD-TSPG protein, a Mitotic Feedback Control Protein MADP2 Homolog LIKE pseudogene and the 3' end of the TCP10 gene for t-complex 10 (mouse), complete sequence Length = 98517 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 acggcacttacaatgatgagggga 168 |||||||||||||| ||||||||| Sbjct: 40880 acggcacttacaatcatgagggga 40903
>gb|AC136443.3| Homo sapiens chromosome 16 clone RP11-719K4, complete sequence Length = 193377 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tctgcacaacacttgccata 35 |||||||||||||||||||| Sbjct: 44882 tctgcacaacacttgccata 44901
>gb|AC020757.5| Homo sapiens chromosome 16 clone CTD-2270E3, complete sequence Length = 159153 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tctgcacaacacttgccata 35 |||||||||||||||||||| Sbjct: 144235 tctgcacaacacttgccata 144216
>gb|AY129332.1| Mycobacteriophage Bxz2, complete genome Length = 50913 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tgatgaccgcacgggccgcg 374 |||||||||||||||||||| Sbjct: 30630 tgatgaccgcacgggccgcg 30611
>gb|AC138932.4| Homo sapiens chromosome 16 clone RP11-680G24, complete sequence Length = 180798 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tctgcacaacacttgccata 35 |||||||||||||||||||| Sbjct: 179369 tctgcacaacacttgccata 179388
>gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13N6 genomic sequence, complete sequence Length = 90698 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 caatagtacgtatgacacaa 145 |||||||||||||||||||| Sbjct: 18466 caatagtacgtatgacacaa 18485
>gb|AC136427.3| Homo sapiens chromosome 16 clone RP11-103G5, complete sequence Length = 145971 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tctgcacaacacttgccata 35 |||||||||||||||||||| Sbjct: 144542 tctgcacaacacttgccata 144561
>gb|AC139236.1| Homo sapiens chromosome 16 clone RP11-1314D11, complete sequence Length = 199021 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tctgcacaacacttgccata 35 |||||||||||||||||||| Sbjct: 166997 tctgcacaacacttgccata 166978 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,231,004 Number of Sequences: 3902068 Number of extensions: 2231004 Number of successful extensions: 40911 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40853 Number of HSP's gapped (non-prelim): 52 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)