>MYCD_HUMAN (Q8IZQ8) Myocardin|
          Length = 938

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 185 QQKQPREQAGIDGVHPRLRRLAACHQQRRH 274
           QQ++ +EQ    G+ P L+R A  H+QR+H
Sbjct: 25  QQRRTQEQLANQGIIPPLKRPAEFHEQRKH 54

>BLVR_BOVIN (Q03368) Bovine leukemia virus cell receptor precursor (BLV-R)|
           (BLVPCP1)
          Length = 843

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -1

Query: 255 HAASLRRRGWTPSMPACSRGCFCCRRASAAPGPRPTPWHCSSCSG 121
           H       G  PS P CS    C    SA  GP P P   ++C G
Sbjct: 713 HTMGQSLAGCRPSHPVCSTTVSCSAEGSAQRGPGPWPPCPAACCG 757

>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = -1

Query: 225 TPSMPACSRGCFC------CRRASAAPGPRPTPWHCSSCSGPSGL 109
           TP  P+CS    C      C  ASAA  P   P  C+S +  + L
Sbjct: 287 TPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAL 331

>ACS2_KLULA (Q9Y7B5) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA|
           ligase 2) (Acyl-activating enzyme 2)
          Length = 684

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 276 PWRRCWWHAASLRRRGWTPSMPACS 202
           P R  WWH   +++RG+ P +P  S
Sbjct: 246 PARDFWWHEECVKQRGYLPPVPVNS 270

>MKL1_MOUSE (Q8K4J6) MKL/myocardin-like protein 1 (Myocardin-related|
           transcription factor A) (MRTF-A) (Megakaryoblastic
           leukemia 1 protein homolog) (Basic SAP coiled-coil
           transcription activator)
          Length = 964

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 QQKQPREQAGIDGVHPRLRRLAACHQQRR 271
           QQ++ RE+    G+ P L+  AA H+QRR
Sbjct: 22  QQRRTREELVSQGIMPPLKSPAAFHEQRR 50

>MRTFA_XENLA (Q8AYC2) Myocardin-related transcription factor A (MRTF-A)|
           (xMRTF-A)
          Length = 936

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 185 QQKQPREQAGIDGVHPRLRRLAACHQQRR 271
           QQ++ RE+    G+ P L+  AA H+QRR
Sbjct: 22  QQRRTREELENQGIMPPLKSPAAFHEQRR 50

>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 470

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
 Frame = -1

Query: 270 RRCW-----WHAASLRRRGWT--PSMPACSRGCFCCRRASAAPGPRPTPWHCSSCS 124
           RR W     W  +  RRRGWT   S P  S    C    +  P    +  HC+S S
Sbjct: 375 RRWWCRAPGWSRSRRRRRGWTGSSSRPVSSGATGCSMCLAMNPDRLESGEHCASTS 430

>GID_RHIME (Q92Q15) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 472

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 322 SRQDRVGGGGSGSEHAMASLLVACRESAEARVDAINAG 209
           SR D+VG GG+G ++    L    +E  +A VDA+ AG
Sbjct: 189 SRYDKVGPGGTGKDYINCPL---TQEQYDAFVDALIAG 223

>RTP1_TRYBG (P15593) Retrotransposable element SLACS 45 kDa protein (ORF1)|
          Length = 404

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = -1

Query: 267 RCWWHAASLRRRG-----WTPSMPACSRGCFCCRRASAAPGPRPTPWHCSSCSGP 118
           R WW ++ + R+       +P +P   +G +   R+    G   +P HC   +GP
Sbjct: 349 RRWWLSSHIWRKRKISTLLSPKLPVPEQGDYPNARSGIGTGAPHSPHHCDRSAGP 403


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,737,659
Number of Sequences: 219361
Number of extensions: 1110536
Number of successful extensions: 3603
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3595
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)