ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46c12 |
|---|---|
| Clone Library Name | barley_pub |
>SMP2_YEAST (P32567) Protein SMP2| Length = 862 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = -3 Query: 480 GTSENKKKEPEKVSKPNDATDAEDARTDNDRSSEPTGTGASFKPGTWLPP 331 G +ENKKKE + + +P D D D ++SE TG+ + + T PP Sbjct: 130 GENENKKKEKKVLEEP-DFLDINDTGDSGSKNSETTGSLSPTESSTTTPP 178
>SKIV2_HUMAN (Q15477) Helicase SKI2W (EC 3.6.1.-) (Helicase-like protein) (HLP)| Length = 1246 Score = 32.0 bits (71), Expect = 0.92 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = -1 Query: 452 LRRCLSLMMRQMQKMPEQIMTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSLLELLF 273 L+RCL+ + +++P+ + + +LN+GLG H PI+ ++E+LF Sbjct: 604 LQRCLARLRGSDRQLPQVL--------HMSELLNRGLGVHHSGILPILK----EIVEMLF 651 Query: 272 FRGLPAV 252 RGL V Sbjct: 652 SRGLVKV 658
>JIP3_HUMAN (Q9UPT6) C-jun-amino-terminal kinase-interacting protein 3| (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3) (Mitogen-activated protein kinase 8-interacting protein 3) Length = 1334 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -3 Query: 453 PEKVSKPNDATDAEDARTDNDRSSEPTGTGASFKPGTWL 337 P+ S+ D+ R + + S +PTG G+S P WL Sbjct: 933 PQPGSENGPEPDSSSTRPEPEPSGDPTGAGSSAAPTMWL 971
>YBAB_SHIFL (P0A8C0) UPF0133 protein ybaB| Length = 109 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 455 NLRRCLSLMMRQMQKMPEQI----MTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSL 288 NL + M +MQKM E+I +TG + +N C R E P + D+ + Sbjct: 9 NLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEM 68 Query: 287 LE 282 LE Sbjct: 69 LE 70
>YBAB_SALTY (P0A8B8) UPF0133 protein ybaB| Length = 109 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 455 NLRRCLSLMMRQMQKMPEQI----MTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSL 288 NL + M +MQKM E+I +TG + +N C R E P + D+ + Sbjct: 9 NLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEM 68 Query: 287 LE 282 LE Sbjct: 69 LE 70
>YBAB_SALTI (P0A8B9) UPF0133 protein ybaB| Length = 109 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 455 NLRRCLSLMMRQMQKMPEQI----MTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSL 288 NL + M +MQKM E+I +TG + +N C R E P + D+ + Sbjct: 9 NLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEM 68 Query: 287 LE 282 LE Sbjct: 69 LE 70
>YBAB_ECOLI (P0A8B5) UPF0133 protein ybaB| Length = 109 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 455 NLRRCLSLMMRQMQKMPEQI----MTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSL 288 NL + M +MQKM E+I +TG + +N C R E P + D+ + Sbjct: 9 NLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEM 68 Query: 287 LE 282 LE Sbjct: 69 LE 70
>YBAB_ECOL6 (P0A8B6) UPF0133 protein ybaB| Length = 109 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 455 NLRRCLSLMMRQMQKMPEQI----MTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSL 288 NL + M +MQKM E+I +TG + +N C R E P + D+ + Sbjct: 9 NLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEM 68 Query: 287 LE 282 LE Sbjct: 69 LE 70
>YBAB_ECO57 (P0A8B7) UPF0133 protein ybaB| Length = 109 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 455 NLRRCLSLMMRQMQKMPEQI----MTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSL 288 NL + M +MQKM E+I +TG + +N C R E P + D+ + Sbjct: 9 NLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEM 68 Query: 287 LE 282 LE Sbjct: 69 LE 70
>TSH1_HUMAN (Q6ZSZ6) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3) (Antigen NY-CO-33) Length = 1077 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = -3 Query: 477 TSENKKKEPEKVSKPNDATDAEDARTDNDRSSEPTGTGASFKPGTWLP 334 T+ +KKEPEK KP A DAE + +++ S E F+P T P Sbjct: 494 TTSEEKKEPEK-EKPPVAGDAEKIKEESEDSLE------KFEPSTLYP 534
>YDVG_SCHPO (O14232) Putative helicase C6F12.16c (EC 3.6.1.-)| Length = 1117 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -1 Query: 386 LPNQQELVPVLNQGLGCHRPECQPIIAADEVSLLELLFFRGL 261 LP + ++P+L +G+G H PI+ ++E+LF GL Sbjct: 506 LPQIEHILPLLRRGIGIHHSGLLPILK----EVIEILFQEGL 543
>Y3840_PHOLL (Q7N0P1) UPF0133 protein plu3840| Length = 109 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 455 NLRRCLSLMMRQMQKMPEQI----MTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSL 288 NL + M +MQKM E+I +TG + +N C R E P + D+ + Sbjct: 9 NLMKQAQQMQDKMQKMQEEIASLEVTGESGAGLVKVTINGAHNCRRVEIDPSLMEDDKEM 68 Query: 287 LE 282 LE Sbjct: 69 LE 70
>SK2L2_MOUSE (Q9CZU3) Superkiller viralicidic activity 2-like 2 (EC 3.6.1.-)| (ATP-dependent helicase SKIV2L2) Length = 1040 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -1 Query: 386 LPNQQELVPVLNQGLGCHRPECQPIIAADEVSLLELLFFRGL 261 LP + ++P+L +G+G H PI+ +E+LF GL Sbjct: 436 LPQVEHVLPLLKRGIGIHHGGLLPILK----ETIEILFSEGL 473
>SK2L2_HUMAN (P42285) Superkiller viralicidic activity 2-like 2 (EC 3.6.1.-)| (ATP-dependent helicase SKIV2L2) Length = 1042 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -1 Query: 386 LPNQQELVPVLNQGLGCHRPECQPIIAADEVSLLELLFFRGL 261 LP + ++P+L +G+G H PI+ +E+LF GL Sbjct: 438 LPQVEHVLPLLKRGIGIHHGGLLPILK----ETIEILFSEGL 475
>Y205_PASMU (P57825) UPF0133 protein PM0205| Length = 109 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 455 NLRRCLSLMMRQMQKMPEQI----MTGLPNQQELVPVLNQGLGCHRPECQPIIAADEVSL 288 NL + M +MQKM E+I +TG + +N C R E P + D+ + Sbjct: 9 NLMKQAQQMQDRMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRVEIDPSLMEDDKDM 68 Query: 287 LE 282 LE Sbjct: 69 LE 70 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,749,599 Number of Sequences: 219361 Number of extensions: 1278475 Number of successful extensions: 4039 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3918 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4030 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
