ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46c12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109609.1| Zea mays CL8480_1 mRNA sequence Length = 917 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 317 gttggcattcaggacggtggcagccaagtccctggtttaaaactggcaccagttcctgtt 376 ||||||||||| | |||||| ||||||||||||| || ||| ||||||||||||| ||| Sbjct: 607 gttggcattcatgttggtggctgccaagtccctggcttgaaagtggcaccagttcccgtt 548 Query: 377 ggttcggaagacctgtcattatctgttctggcatcttctg 416 ||||| | | |||| ||||| ||||| | |||||||||| Sbjct: 547 ggttcagtatacctctcattgtctgtcgtagcatcttctg 508
>dbj|AK071129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077C23, full insert sequence Length = 1004 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 332 ggtggcagccaagtccctggtttaaaactggcaccagttcctgttggttcggaagacctg 391 |||||| |||| ||||||||||| || | |||||||||||||| ||||| ||||||||| Sbjct: 740 ggtggctgccatgtccctggtttgaaggtagcaccagttcctgtcggttcagaagacctg 681 Query: 392 tcattatct 400 ||| ||||| Sbjct: 680 tcagtatct 672
>ref|XM_475786.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 726 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 332 ggtggcagccaagtccctggtttaaaactggcaccagttcctgttggttcggaagacctg 391 |||||| |||| ||||| ||||| || | |||||||||||||| ||||| ||||||||| Sbjct: 719 ggtggctgccatgtccccggtttgaaggtagcaccagttcctgtcggttcagaagacctg 660 Query: 392 tcattatct 400 ||| ||||| Sbjct: 659 tcagtatct 651
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 332 ggtggcagccaagtccctggtttaaaactggcaccagttcctgttggttcggaagacctg 391 |||||| |||| ||||||||||| || | |||||||||||||| ||||| ||||||||| Sbjct: 112162 ggtggctgccatgtccctggtttgaaggtagcaccagttcctgtcggttcagaagacctg 112221
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 332 ggtggcagccaagtccctggtttaaaactggcaccagttcctgttggttcggaagacctg 391 |||||| |||| ||||||||||| || | |||||||||||||| ||||| ||||||||| Sbjct: 19066764 ggtggctgccatgtccctggtttgaaggtagcaccagttcctgtcggttcagaagacctg 19066823
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 48.1 bits (24), Expect = 0.027 Identities = 51/60 (85%) Strand = Plus / Plus Query: 332 ggtggcagccaagtccctggtttaaaactggcaccagttcctgttggttcggaagacctg 391 |||||| |||| ||||| ||||| || | |||||||||||||| ||||| ||||||||| Sbjct: 68699 ggtggctgccatgtccccggtttgaaggtagcaccagttcctgtcggttcagaagacctg 68758
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.027 Identities = 51/60 (85%) Strand = Plus / Plus Query: 332 ggtggcagccaagtccctggtttaaaactggcaccagttcctgttggttcggaagacctg 391 |||||| |||| ||||| ||||| || | |||||||||||||| ||||| ||||||||| Sbjct: 26555224 ggtggctgccatgtccccggtttgaaggtagcaccagttcctgtcggttcagaagacctg 26555283 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccatttcttgcatcaaaatg 212 |||||||||||||||||||| Sbjct: 12935133 ccatttcttgcatcaaaatg 12935152
>gb|AC183831.2| Pan troglodytes BAC clone CH251-280E18 from chromosome 7, complete sequence Length = 169210 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 454 ttctttctttttattttcagatg 476 ||||||||||||||||||||||| Sbjct: 110481 ttctttctttttattttcagatg 110459
>gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, complete sequence Length = 179509 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 454 ttctttctttttattttcagatg 476 ||||||||||||||||||||||| Sbjct: 83448 ttctttctttttattttcagatg 83426
>gb|AC124908.3| Equus caballus clone CH241-67M21, complete sequence Length = 170710 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 457 tttctttttattttcagatgtac 479 ||||||||||||||||||||||| Sbjct: 25737 tttctttttattttcagatgtac 25715
>gb|AC006329.5| Homo sapiens BAC clone RP11-132A1 from 7, complete sequence Length = 145253 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 454 ttctttctttttattttcagatg 476 ||||||||||||||||||||||| Sbjct: 106620 ttctttctttttattttcagatg 106642
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 457 tttctttttattttcagatgtac 479 ||||||||||||||||||||||| Sbjct: 1261429 tttctttttattttcagatgtac 1261407
>gb|AC107769.7| Mus musculus chromosome 16, clone RP23-130N20, complete sequence Length = 192682 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 actttatagaaaggaggctgat 35 |||||||||||||||||||||| Sbjct: 90661 actttatagaaaggaggctgat 90682
>emb|CT025155.9| Mouse DNA sequence from clone RP23-228F18 on chromosome 16, complete sequence Length = 203093 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 445 cttctcaggttctttctttttatttt 470 |||| ||||||||||||||||||||| Sbjct: 155258 cttcacaggttctttctttttatttt 155233
>gb|AC124755.4| Mus musculus BAC clone RP23-285L4 from chromosome 12, complete sequence Length = 190631 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 tttactacgtatcaaaactag 74 ||||||||||||||||||||| Sbjct: 75091 tttactacgtatcaaaactag 75111
>emb|BX664718.7| Human DNA sequence from clone RP11-175I6 on chromosome 9 Conatins a pseudogene similar to part of fibroblast growth factor 7 (keratinocyte growth factor) (FGF7), two novel pseudogenes, a pseudogene similar to part of G protein-coupled receptor 116 (GPR116), a novel gene and a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A), complete sequence Length = 167646 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 gcaaaaatcaaaaagagagaa 109 ||||||||||||||||||||| Sbjct: 107821 gcaaaaatcaaaaagagagaa 107801
>emb|AL592549.7| Human DNA sequence from clone RP11-374B16 on chromosome 9, complete sequence Length = 128613 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 tcaagcagggacacttcatct 303 ||||||||||||||||||||| Sbjct: 32285 tcaagcagggacacttcatct 32265
>emb|AL356267.27| Human DNA sequence from clone RP11-309G3 on chromosome 1 Contains the 5' end of the STX6 gene for syntaxin 6, the MR1 gene for major histocompatibility complex class I-related, the IER5 gene for immediate early response 5, the 5' end of a novel gene (LOC284646) and two CpG islands, complete sequence Length = 181808 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 ttctttctttttattttcaga 474 ||||||||||||||||||||| Sbjct: 91014 ttctttctttttattttcaga 91034
>emb|BX649563.5| Human DNA sequence from clone RP11-213O5 on chromosome 9 Contains a pseudogene similar to part of a novel protein (DKFZp434A171), a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene similar to part of a novel transmembrane receptor protein and two novel pseudogenes, complete sequence Length = 189495 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 gcaaaaatcaaaaagagagaa 109 ||||||||||||||||||||| Sbjct: 88339 gcaaaaatcaaaaagagagaa 88359
>gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, complete sequence Length = 179544 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 ttctttctttttattttcaga 474 ||||||||||||||||||||| Sbjct: 125071 ttctttctttttattttcaga 125051
>gb|AC153992.7| Mus musculus 6 BAC RP24-116E17 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195972 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 ctttctttttattttcagatg 476 ||||||||||||||||||||| Sbjct: 64367 ctttctttttattttcagatg 64347
>gb|AC092682.2| Homo sapiens BAC clone RP11-734C21 from 2, complete sequence Length = 188920 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 aaaatcaaaaagagagaatgc 112 ||||||||||||||||||||| Sbjct: 122285 aaaatcaaaaagagagaatgc 122265
>gb|AC006952.6|AC006952 Homo sapiens chromosome 9, clone hRPK.374_B_16, complete sequence Length = 219345 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 tcaagcagggacacttcatct 303 ||||||||||||||||||||| Sbjct: 83547 tcaagcagggacacttcatct 83527
>emb|AL731648.6| Mouse DNA sequence from clone RP23-35I10 on chromosome X, complete sequence Length = 119995 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 acagaactcttaactttatag 22 ||||||||||||||||||||| Sbjct: 112186 acagaactcttaactttatag 112166
>gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0411C02, complete sequence Length = 145676 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccatttcttgcatcaaaatg 212 |||||||||||||||||||| Sbjct: 15210 ccatttcttgcatcaaaatg 15229
>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08, complete sequence Length = 141383 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccatttcttgcatcaaaatg 212 |||||||||||||||||||| Sbjct: 95679 ccatttcttgcatcaaaatg 95698
>gb|AC131112.3| Mus musculus BAC clone RP24-136L4 from chromosome 7, complete sequence Length = 172989 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 aaaatcaaaaagagagaatgctca 115 ||||||||||||| |||||||||| Sbjct: 147626 aaaatcaaaaagaaagaatgctca 147603
>gb|AC122199.4| Mus musculus BAC clone RP23-57C9 from chromosome 8, complete sequence Length = 202975 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 tctttctttttattttcaga 474 |||||||||||||||||||| Sbjct: 56133 tctttctttttattttcaga 56114
>gb|AC110302.4| Mus musculus BAC clone RP24-194G21 from 12, complete sequence Length = 168601 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 agagaatgctcatgttgctt 123 |||||||||||||||||||| Sbjct: 90177 agagaatgctcatgttgctt 90158
>gb|AC079231.6| Homo sapiens BAC clone RP11-348A21 from 7, complete sequence Length = 87047 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 ggttctttctttttattttc 471 |||||||||||||||||||| Sbjct: 39671 ggttctttctttttattttc 39652
>gb|AC080080.5| Homo sapiens BAC clone RP11-511H23 from 7, complete sequence Length = 154919 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tgtaccagggaactgctgtg 494 |||||||||||||||||||| Sbjct: 4848 tgtaccagggaactgctgtg 4829
>gb|BC010666.1| Mus musculus fucosyltransferase 8, mRNA (cDNA clone MGC:11418 IMAGE:3594582), complete cds Length = 2976 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 agagaatgctcatgttgctt 123 |||||||||||||||||||| Sbjct: 209 agagaatgctcatgttgctt 228
>gb|AC157609.6| Mus musculus chromosome 8, clone RP23-94H5, complete sequence Length = 239452 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cagaactccccatttcttgc 203 |||||||||||||||||||| Sbjct: 75822 cagaactccccatttcttgc 75841
>emb|AL353637.21| Human DNA sequence from clone RP11-159H20 on chromosome 9q21.12-21.32 Contains a DnaJ (Hsp40) homolog subfamily B member 5 (DNAJB5) pseudogene, a lysophospholipase II (LYPLA2) pseudogene, an eukaryotic translation initiation factor 3 subunit 1 35kDa (EIF3S1) pseudogene, the gene (possible pseudogene) for a novel protein similar to forkhead box B1 (FOXB1), ATP synthase H+ transporting mitochondrial F0 complex subunit f isoform 2 (ATP5J2) pseudogene and three CpG islands, complete sequence Length = 146466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 aggttctttctttttatttt 470 |||||||||||||||||||| Sbjct: 84193 aggttctttctttttatttt 84174
>gb|AY341245.1| Homo sapiens chromosome condensation 1-like (CHC1L) gene, complete cds Length = 37676 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 tctttctttttattttcaga 474 |||||||||||||||||||| Sbjct: 12613 tctttctttttattttcaga 12632
>emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chromosome 13 Contains the CHC1L gene for chromosome condensation 1-like, 3 novel genes and a CpG island, complete sequence Length = 114519 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 tctttctttttattttcaga 474 |||||||||||||||||||| Sbjct: 24505 tctttctttttattttcaga 24486
>gb|AC158213.4| Mus musculus chromosome 7, clone RP24-253H20, complete sequence Length = 175873 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 ttctttctttttattttcag 473 |||||||||||||||||||| Sbjct: 128559 ttctttctttttattttcag 128540
>emb|Y08238.1|HPCLPB H.pylori clpB gene Length = 3121 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 ttctttctttttattttcag 473 |||||||||||||||||||| Sbjct: 1727 ttctttctttttattttcag 1708
>gb|AC163012.4| Mus musculus chromosome 8, clone RP23-22A17, complete sequence Length = 211779 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 agctcaagcagggacacttc 299 |||||||||||||||||||| Sbjct: 50714 agctcaagcagggacacttc 50695
>emb|AL627069.10| Mouse DNA sequence from clone RP23-385C16 on chromosome 11 Contains the Mrps24 gene for mitochondrial ribosomal protein S24, a novel gene, a ubiquitin-conjugating enzyme E2D (Ube2d) pseudogene, the Dbnl gene for drebrin-like, the Pgam2 gene for phosphoglycerate mutase 2, a pseudogene similar to part of H+ transporting mitochondrial F0 complex ATP synthase subunit F Atp5j, the Polm gene for polymerase (DNA directed) mu, the Aebp1 gene for AE binding protein 1, the Pold2 gene for polymerase (DNA directed) delta 2 regulatory subunit, novel gene (1600028I17Rik) and seven CpG islands, complete sequence Length = 195129 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 439 agacaccttctcaggttctttctttttatttt 470 |||||| || ||||||||||||||||| |||| Sbjct: 1774 agacactttgtcaggttctttctttttttttt 1805
>emb|AL669935.7| Mouse DNA sequence from clone RP23-387E5 on chromosome 11 Contains the 3' end of the gene for a novel ankyrin repeat containing protein, a endothelial differentiation-related factor 1 (Edf1) pseudogene, a novel gene, a novel pseudogene and a postsynaptic protein (Cript) pseudogene, complete sequence Length = 95039 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 439 agacaccttctcaggttctttctttttatttt 470 |||||| || ||||||||||||||||| |||| Sbjct: 94813 agacactttgtcaggttctttctttttttttt 94844
>emb|BX324166.8| Zebrafish DNA sequence from clone DKEY-66A8 in linkage group 6, complete sequence Length = 215450 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 tttttattttcagatgtacc 480 |||||||||||||||||||| Sbjct: 183595 tttttattttcagatgtacc 183614
>emb|BX548000.6| Zebrafish DNA sequence from clone CH211-199M8 in linkage group 11, complete sequence Length = 216767 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 ctttctttttattttcagat 475 |||||||||||||||||||| Sbjct: 21427 ctttctttttattttcagat 21446
>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence Length = 190681 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 atcaaaatggtggaggagag 223 |||||||||||||||||||| Sbjct: 32894 atcaaaatggtggaggagag 32875
>dbj|AK133547.1| Mus musculus adult male xiphoid cartilage cDNA, RIKEN full-length enriched library, clone:5230401L13 product:fucosyltransferase 8, full insert sequence Length = 3511 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 agagaatgctcatgttgctt 123 |||||||||||||||||||| Sbjct: 2020 agagaatgctcatgttgctt 2039
>gb|AC025524.9| Homo sapiens chromosome 8, clone RP11-705O24, complete sequence Length = 165720 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tttctttttattttcagatg 476 |||||||||||||||||||| Sbjct: 533 tttctttttattttcagatg 552
>gb|AC011179.9| Homo sapiens, clone RP11-11N24, complete sequence Length = 153472 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 tttctttttattttcagatg 476 |||||||||||||||||||| Sbjct: 31933 tttctttttattttcagatg 31914
>dbj|AK165305.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430011J12 product:unclassifiable, full insert sequence Length = 3003 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 agagaatgctcatgttgctt 123 |||||||||||||||||||| Sbjct: 1527 agagaatgctcatgttgctt 1546
>gb|AY541738.1| Microtus agrestis isolate ExDBYsorknord DBY gene, partial sequence Length = 298 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tttctttttattttcagatg 476 |||||||||||||||||||| Sbjct: 228 tttctttttattttcagatg 247
>gb|AY541715.1| Microtus agrestis isolate ExDBYsorksyd DBY gene, partial sequence Length = 298 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tttctttttattttcagatg 476 |||||||||||||||||||| Sbjct: 228 tttctttttattttcagatg 247
>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 135177 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 aaaatacagaactccccatttctt 201 ||||||||||| |||||||||||| Sbjct: 11938 aaaatacagaagtccccatttctt 11961
>gb|U96409.1| Human Xp22 contig of 3 PACS (R7-39D12, R7-134G1, R7-185L21) from the Roswell Park Cancer Institute, complete sequence Length = 169465 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 caggttctttctttttattt 469 |||||||||||||||||||| Sbjct: 96537 caggttctttctttttattt 96556
>gb|AC111000.3| Homo sapiens BAC clone RP13-644M16 from 4, complete sequence Length = 156578 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 aggttctttctttttatttt 470 |||||||||||||||||||| Sbjct: 83238 aggttctttctttttatttt 83257
>gb|AC103664.12| Mus musculus chromosome 7, clone RP23-348F4, complete sequence Length = 222413 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 ttctttctttttattttcag 473 |||||||||||||||||||| Sbjct: 95182 ttctttctttttattttcag 95163
>gb|AC120425.12| Mus musculus chromosome 14, clone RP24-510K2, complete sequence Length = 209178 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ctggcaccagttcctgttgg 378 |||||||||||||||||||| Sbjct: 135175 ctggcaccagttcctgttgg 135156
>gb|AC120547.8| Mus musculus chromosome 8, clone RP23-243L19, complete sequence Length = 170147 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 agctcaagcagggacacttc 299 |||||||||||||||||||| Sbjct: 55831 agctcaagcagggacacttc 55850
>gb|AE000511.1| Helicobacter pylori 26695, complete genome Length = 1667867 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 ttctttctttttattttcag 473 |||||||||||||||||||| Sbjct: 274155 ttctttctttttattttcag 274136
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 tctttctttttattttcaga 474 |||||||||||||||||||| Sbjct: 1199708 tctttctttttattttcaga 1199689
>gb|AC131737.3| Mus musculus BAC clone RP23-106E9 from 7, complete sequence Length = 205306 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 aaaatcaaaaagagagaatgctca 115 ||||||||||||| |||||||||| Sbjct: 193386 aaaatcaaaaagaaagaatgctca 193409
>emb|AL805931.4| Mouse DNA sequence from clone RP23-195A22 on chromosome X, complete sequence Length = 157176 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 tgaacttcagcaattgacag 161 |||||||||||||||||||| Sbjct: 140593 tgaacttcagcaattgacag 140574 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,910,297 Number of Sequences: 3902068 Number of extensions: 5910297 Number of successful extensions: 150040 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149756 Number of HSP's gapped (non-prelim): 284 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
