ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOXF1_HUMAN (Q12946) Forkhead box protein F1 (Forkhead-related p... 29 3.5
2FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related p... 29 3.5
3FOXF1_MOUSE (Q61080) Forkhead box protein F1 (Forkhead-related p... 29 3.5
4PIP_LACDL (P46542) Proline iminopeptidase (EC 3.4.11.5) (PIP) (P... 28 7.7
5RL18_ARATH (P42791) 60S ribosomal protein L18 28 7.7

>FOXF1_HUMAN (Q12946) Forkhead box protein F1 (Forkhead-related protein FKHL5)|
           (Forkhead-related transcription factor 1) (FREAC-1)
           (Forkhead-related activator 1)
          Length = 354

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 122 ASKRSFQKGNQKRERRGAHRSCSALRP 202
           AS+  F++G+ +R  RG  R C AL+P
Sbjct: 102 ASEFMFEEGSFRRRPRGFRRKCQALKP 128



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>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)|
           (Forkhead-related transcription factor 2) (FREAC-2)
           (Forkhead-related activator 2)
          Length = 444

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 122 ASKRSFQKGNQKRERRGAHRSCSALRP 202
           AS+  F++G+ +R  RG  R C AL+P
Sbjct: 179 ASEFMFEEGSFRRRPRGFRRKCQALKP 205



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>FOXF1_MOUSE (Q61080) Forkhead box protein F1 (Forkhead-related protein FKHL5)|
           (Forkhead-related transcription factor 1) (FREAC-1)
           (Hepatocyte nuclear factor 3 forkhead homolog 8) (HFH-8)
          Length = 353

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 122 ASKRSFQKGNQKRERRGAHRSCSALRP 202
           AS+  F++G+ +R  RG  R C AL+P
Sbjct: 102 ASEFMFEEGSFRRRPRGFRRKCQALKP 128



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>PIP_LACDL (P46542) Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl|
           aminopeptidase) (PAP)
          Length = 294

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 156 KEREGGHIGAVLLSGPNN---VGNRHGKEKEGKLKEVNPISLALRG 284
           ++++GG++  +   GPN    +GN HG E   +LK+++  +L   G
Sbjct: 197 RKKKGGNLAYLTGWGPNEYTPIGNLHGYEYTDRLKDLDLPALITSG 242



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>RL18_ARATH (P42791) 60S ribosomal protein L18|
          Length = 187

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 95  HAHRPSYIVASKRSFQKGNQKRERRG 172
           H+H   Y+ A  R F+K   KR+ RG
Sbjct: 159 HSHSKPYVRAKGRKFEKARGKRKSRG 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,845,424
Number of Sequences: 219361
Number of extensions: 773352
Number of successful extensions: 2067
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2066
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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