ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, co... 34 8.7
2ref|NG_005483.1| Homo sapiens ATPase, H+ transporting, lysosomal... 34 8.7
3gb|AC138681.3| Homo sapiens chromosome 8, clone RP13-41K17, comp... 34 8.7

>gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, complete sequence
          Length = 177423

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 14     cattaaaaggttaactc 30
              |||||||||||||||||
Sbjct: 160257 cattaaaaggttaactc 160273



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>ref|NG_005483.1| Homo sapiens ATPase, H+ transporting, lysosomal 13kDa, V1 subunit
          G pseudogene 2 (ATP6V1GP2) on chromosome 8
          Length = 1206

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 14 cattaaaaggttaactc 30
          |||||||||||||||||
Sbjct: 27 cattaaaaggttaactc 43



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>gb|AC138681.3| Homo sapiens chromosome 8, clone RP13-41K17, complete sequence
          Length = 28800

 Score = 34.2 bits (17), Expect = 8.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 14    cattaaaaggttaactc 30
             |||||||||||||||||
Sbjct: 25073 cattaaaaggttaactc 25057


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,762
Number of Sequences: 3902068
Number of extensions: 75762
Number of successful extensions: 21495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21491
Number of HSP's gapped (non-prelim): 4
length of query: 30
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 10
effective length of database: 17,155,003,908
effective search space: 171550039080
effective search space used: 171550039080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)
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