ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46c09 |
|---|---|
| Clone Library Name | barley_pub |
>CHIP_TOBAC (P17513) Acidic endochitinase P precursor (EC 3.2.1.14)| (Pathogenesis-related protein P) (PR-P) Length = 253 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/23 (73%), Positives = 17/23 (73%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYCGML A G NLDCY Q NFA Sbjct: 229 RYCGMLNVAPGDNLDCYNQRNFA 251
>CHI2_BRANA (Q09023) Endochitinase CH25 precursor (EC 3.2.1.14)| Length = 322 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG GGNLDCY Q +FAS Sbjct: 290 RYCNILGVNPGGNLDCYNQRSFAS 313
>CHIQ_TOBAC (P17514) Acidic endochitinase Q precursor (EC 3.2.1.14)| (Pathogenesis-related protein Q) (PR-Q) Length = 253 Score = 39.3 bits (90), Expect = 0.003 Identities = 16/22 (72%), Positives = 16/22 (72%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNF 190 RYCGML A G NLDCY Q NF Sbjct: 229 RYCGMLNVAPGENLDCYNQRNF 250
>CHIA_LYCES (Q05539) Acidic 26 kDa endochitinase precursor (EC 3.2.1.14)| Length = 253 Score = 37.7 bits (86), Expect = 0.008 Identities = 16/23 (69%), Positives = 16/23 (69%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYCGML TG NLDC Q NFA Sbjct: 229 RYCGMLNVPTGENLDCNNQKNFA 251
>CHIA_LYCCI (Q40114) Acidic endochitinase pcht28 precursor (EC 3.2.1.14)| Length = 253 Score = 37.7 bits (86), Expect = 0.008 Identities = 16/23 (69%), Positives = 16/23 (69%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYCGML TG NLDC Q NFA Sbjct: 229 RYCGMLNVPTGENLDCNNQKNFA 251
>CHIB_LYCES (Q05540) Acidic 27 kDa endochitinase precursor (EC 3.2.1.14)| Length = 247 Score = 36.2 bits (82), Expect = 0.023 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYC +L A G NLDCY Q NFA Sbjct: 223 RYCTILNVAPGDNLDCYDQRNFA 245
>CHIB_ARATH (P19171) Basic endochitinase B precursor (EC 3.2.1.14)| (Pathogenesis-related protein 3) (PR-3) (AtChiB) Length = 335 Score = 35.4 bits (80), Expect = 0.039 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC + G GGNLDCY Q +F + Sbjct: 305 RYCNIFGVNPGGNLDCYNQRSFVN 328
>CHI2_HORVU (P23951) 26 kDa endochitinase 2 precursor (EC 3.2.1.14) (CHI-26)| Length = 266 Score = 35.0 bits (79), Expect = 0.051 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYC +LG G NLDCY+Q FA Sbjct: 244 RYCDILGVGYGNNLDCYSQRPFA 266
>CHI1_HORVU (P11955) 26 kDa endochitinase 1 precursor (EC 3.2.1.14)| Length = 318 Score = 35.0 bits (79), Expect = 0.051 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYC +LG G NLDCY+Q FA Sbjct: 296 RYCDILGVGYGNNLDCYSQRPFA 318
>CHI1_GOSHI (Q39799) Endochitinase 1 precursor (EC 3.2.1.14)| Length = 324 Score = 34.7 bits (78), Expect = 0.067 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG + G NLDCY Q F + Sbjct: 294 RYCDILGVSYGNNLDCYNQSPFGN 317
>CHI2_GOSHI (Q39785) Endochitinase 2 precursor (EC 3.2.1.14) (Fragment)| Length = 302 Score = 34.7 bits (78), Expect = 0.067 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG + G NLDCY Q F + Sbjct: 272 RYCDILGVSYGNNLDCYNQSPFGN 295
>CHIC_SECCE (Q9FRV0) Basic endochitinase C precursor (EC 3.2.1.14) (Rye seed| chitinase-c) (RSC-c) Length = 266 Score = 34.3 bits (77), Expect = 0.087 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYC +LG G NLDCY Q FA Sbjct: 244 RYCDILGVGYGDNLDCYNQRPFA 266
>CHIT_PHAVU (P06215) Endochitinase precursor (EC 3.2.1.14)| Length = 328 Score = 34.3 bits (77), Expect = 0.087 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG G NLDCY+Q F + Sbjct: 294 RYCDLLGVGYGNNLDCYSQTPFGN 317
>CHI5_PHAVU (P36361) Endochitinase CH5B precursor (EC 3.2.1.14)| Length = 327 Score = 34.3 bits (77), Expect = 0.087 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG G NLDCY+Q F + Sbjct: 293 RYCDLLGVGYGNNLDCYSQTPFGN 316
>CHI2_SOLTU (P52404) Endochitinase 2 precursor (EC 3.2.1.14) (Fragment)| Length = 316 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYCG+LG + G NLDC Q +F + Sbjct: 286 RYCGILGVSPGDNLDCGNQRSFGN 309
>CHI1_ORYSA (P24626) Basic endochitinase 1 precursor (EC 3.2.1.14)| Length = 320 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQ 199 RYC MLG + G NLDCY Q Sbjct: 296 RYCDMLGVSYGDNLDCYNQ 314
>CHI3_SOLTU (P52405) Endochitinase 3 precursor (EC 3.2.1.14) (Fragment)| Length = 318 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYCG+LG + G NLDC Q +F + Sbjct: 288 RYCGILGVSPGDNLDCGNQRSFGN 311
>CHI1_SOLTU (P52403) Endochitinase 1 precursor (EC 3.2.1.14) (Fragment)| Length = 318 Score = 33.9 bits (76), Expect = 0.11 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYCG+LG + G NLDC Q +F + Sbjct: 288 RYCGILGVSPGDNLDCGNQRSFGN 311
>CHIC_LYCES (Q05538) Basic 30 kDa endochitinase precursor (EC 3.2.1.14)| Length = 322 Score = 33.5 bits (75), Expect = 0.15 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYCG+LG + G NLDC Q +F + Sbjct: 292 RYCGILGVSPGENLDCGNQRSFGN 315
>CHI2_ORYSA (P25765) Basic endochitinase 2 precursor (EC 3.2.1.14)| Length = 336 Score = 33.1 bits (74), Expect = 0.19 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQ 199 RYC +LG + G NLDCY+Q Sbjct: 298 RYCDILGVSYGANLDCYSQ 316
>CHI6_POPTR (P16579) Acidic endochitinase WIN6 precursor (EC 3.2.1.14)| Length = 340 Score = 32.7 bits (73), Expect = 0.25 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNF 190 +YC LGT G NLDCY Q F Sbjct: 308 KYCDSLGTTYGSNLDCYQQRPF 329
>CHI2_PEA (P21226) Endochitinase A2 precursor (EC 3.2.1.14)| Length = 324 Score = 32.7 bits (73), Expect = 0.25 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC + G G NLDCY+Q F S Sbjct: 286 RYCDIFGIGYGDNLDCYSQRPFGS 309
>CHIX_PEA (P36907) Endochitinase precursor (EC 3.2.1.14)| Length = 320 Score = 32.3 bits (72), Expect = 0.33 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYC + G GGNLDC Q +FA Sbjct: 298 RYCQIFGVDPGGNLDCNNQRSFA 320
>CHI1_THECC (Q41596) Endochitinase 1 precursor (EC 3.2.1.14)| Length = 321 Score = 32.3 bits (72), Expect = 0.33 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNF 190 RYC LG G NLDCY Q ++ Sbjct: 291 RYCDTLGVGYGNNLDCYNQRSY 312
>CHIB_POPTR (P29031) Acidic endochitinase WIN6.2B precursor (EC 3.2.1.14)| Length = 303 Score = 32.0 bits (71), Expect = 0.43 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = -2 Query: 252 YCGMLGTATGGNLDCYTQGNF 190 YC LGT G NLDCY Q F Sbjct: 272 YCDSLGTTYGSNLDCYQQRPF 292
>CHI2_TOBAC (P24091) Endochitinase B precursor (EC 3.2.1.14) (CHN-B)| Length = 324 Score = 31.6 bits (70), Expect = 0.56 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG + G NLDC Q +F + Sbjct: 294 RYCSILGVSPGDNLDCGNQRSFGN 317
>CHI1_TOBAC (P08252) Endochitinase A precursor (EC 3.2.1.14) (CHN-A)| Length = 329 Score = 31.6 bits (70), Expect = 0.56 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG + G NLDC Q +F + Sbjct: 299 RYCSILGVSPGDNLDCGNQRSFGN 322
>CHIA_SECCE (Q9FRV1) Basic endochitinase A precursor (EC 3.2.1.14) (Rye seed| chitinase-a) (RSC-a) Length = 321 Score = 31.6 bits (70), Expect = 0.56 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 RYC +L G NLDCY Q FA Sbjct: 299 RYCDILRVGYGNNLDCYNQRPFA 321
>CHI3_TOBAC (P29059) Endochitinase 3 precursor (EC 3.2.1.14)| Length = 334 Score = 31.2 bits (69), Expect = 0.74 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG + G N+DC Q +F S Sbjct: 304 RYCSILGVSPGDNIDCGNQKSFNS 327
>CHIT_SOLTU (P05315) Endochitinase precursor (EC 3.2.1.14)| Length = 328 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +LG G NLDC Q F + Sbjct: 298 RYCSILGVTPGDNLDCVNQRWFGN 321
>CHIT_PETHY (P29021) Acidic endochitinase precursor (EC 3.2.1.14)| Length = 254 Score = 29.3 bits (64), Expect = 2.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFA 187 R ++ A G NLDCY Q NFA Sbjct: 230 RNVSIMNVAPGDNLDCYNQRNFA 252
>CHID_LYCES (Q05537) Basic endochitinase (EC 3.2.1.14) (Fragment)| Length = 246 Score = 28.9 bits (63), Expect = 3.6 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNF 190 RYC +LG G NLDC Q F Sbjct: 224 RYCQILGVDPGNNLDCANQRPF 245
>CHIB_VITVI (P51613) Basic endochitinase precursor (EC 3.2.1.14)| Length = 314 Score = 28.5 bits (62), Expect = 4.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 255 RYCGMLGTATGGNLDCYTQGNFAS 184 RYC +L + G NLDC Q F S Sbjct: 284 RYCDILRVSYGNNLDCNNQRPFGS 307 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,590,096 Number of Sequences: 219361 Number of extensions: 566559 Number of successful extensions: 1282 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1276 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1282 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
