ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X78672.1|HVCHT2B H.vulgare mRNA for chitinase 2b 478 e-132
2emb|AJ276226.1|HVU276226 Hordeum vulgare mRNA for chitinase II (... 270 2e-69
3gb|AF280438.1|AF280438 Secale cereale 24.8 kDa class II endochit... 131 1e-27
4dbj|AB029934.1| Triticum aestivum Chi 1 mRNA for chitinase 1, co... 121 1e-24
5emb|X78671.1|HVCHT2A H.vulgare mRNA for chitinase 2a 105 7e-20
6gb|L40336.1|RICCHITB Oryza sativa chitinase (Rcht2) gene, comple... 58 1e-05
7gb|L40338.1|RICRCH0 Oryza sativa (clone RCH08) chitinase (Rcht2)... 58 1e-05
8gb|AF013580.1|AF013580 Oryza sativa clone RGCH8 chitinase gene, ... 46 0.054
9gb|AF001500.1|OSAF001500 Oryza sativa clone MIRCH1 chitinase mRN... 46 0.054
10emb|BX547936.5| Mouse DNA sequence from clone RP23-109A11 on chr... 44 0.21
11ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chitinas... 42 0.84
12emb|BX897692.16| Zebrafish DNA sequence from clone DKEY-34F9 in ... 42 0.84
13gb|AC010303.7| Homo sapiens chromosome 5 clone CTB-37A13, comple... 42 0.84
14gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 42 0.84
15gb|AC008449.6| Homo sapiens chromosome 5 clone CTC-341A9, comple... 42 0.84
16dbj|AK019531.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 42 0.84
17dbj|AK034771.1| Mus musculus 12 days embryo embryonic body betwe... 42 0.84
18dbj|AK042445.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 0.84
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.84
20gb|AC136966.2| Bos taurus clone RP42-221D7, complete sequence 42 0.84
21dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.84
22gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Canc... 42 0.84
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.84
24dbj|AB016497.1| Oryza sativa mRNA for chitinase, complete cds 42 0.84
25gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 3.3
26gb|AC139334.3| Mus musculus BAC clone RP23-449C21 from chromosom... 40 3.3
27gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 3.3
28emb|BX470263.9| Zebrafish DNA sequence from clone DKEY-15P9 in l... 40 3.3
29dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 3.3
30gb|AC112233.3| Homo sapiens BAC clone RP11-211G17 from 4, comple... 40 3.3
31gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, comp... 40 3.3
32dbj|AK154042.1| Mus musculus 2 days neonate thymus thymic cells ... 40 3.3
33gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, compl... 40 3.3
34gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 3.3
35gb|AC137976.13| Mus musculus chromosome 8, clone RP23-262K12, co... 40 3.3
36gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 3.3
37gb|AC125358.4| Mus musculus BAC clone RP23-256E3 from 8, complet... 40 3.3
38dbj|AP006077.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 3.3
39gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 3.3
40gb|CP000036.1| Shigella boydii Sb227, complete genome 40 3.3
41gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 3.3 
>emb|X78672.1|HVCHT2B H.vulgare mRNA for chitinase 2b
          Length = 1013

 Score =  478 bits (241), Expect = e-132
 Identities = 250/253 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gatatgattttattgaacaatttacataatttgttacaacaacttactcgtattatcata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 gatatgattttattgaacaatttacataatttgttacaacaacttactcgtattatcata 932

                                                                       
Query: 64  cgacacgatcaactggatcacatatcgaattatttatttcatgatgggatatgtgttgcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 cgacacgatcaactggatcacatatcgaattatttatttcatgatgggatatgtgttgcc 872

                                                                       
Query: 124 ccttattcatgagtgtagccctttattcgtaacacgtgcatacactatccatagtgtcta 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ccttattcatgagtctagccctttattcgtaacacgtgcatacactatccatagtgtcta 812

                                                                       
Query: 184 gctagcgaagtttccctgggtgtaacagtcgaggttgcctccggtggccgtgccaagcat 243
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 811 gctagcgaagtttcgctgggtgtagcagtcgaggttgcctccggtggccgtgccaagcat 752

                        
Query: 244 gccgcagtagcgc 256
           |||||||||||||
Sbjct: 751 gccgcagtagcgc 739
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>emb|AJ276226.1|HVU276226 Hordeum vulgare mRNA for chitinase II (pathogenesis-related protein
           3) (cht2 gene)
          Length = 890

 Score =  270 bits (136), Expect = 2e-69
 Identities = 143/146 (97%)
 Strand = Plus / Minus

                                                                       
Query: 111 gatatgtgttgccccttattcatgagtgtagccctttattcgtaacacgtgcatacacta 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 890 gatatgtgttgccccttattcatgagtgtagccctttattcgtaacacgtgcatacactr 831

                                                                       
Query: 171 tccatagtgtctagctagcgaagtttccctgggtgtaacagtcgaggttgcctccggtgg 230
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 830 tccatagtgtctagctagcgaagtttcgctgggtgtagcagtcgaggttgcctccggtgg 771

                                     
Query: 231 ccgtgccaagcatgccgcagtagcgc 256
           ||||||||||||||||||||||||||
Sbjct: 770 ccgtgccaagcatgccgcagtagcgc 745
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>gb|AF280438.1|AF280438 Secale cereale 24.8 kDa class II endochitinase-antifreeze protein
           precursor, mRNA, complete cds
          Length = 998

 Score =  131 bits (66), Expect = 1e-27
 Identities = 75/78 (96%)
 Strand = Plus / Minus

                                                                       
Query: 178 tgtctagctagcgaagtttccctgggtgtaacagtcgaggttgcctccggtggccgtgcc 237
           |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct: 840 tgtctagctagcgaagtttcgctgggtgtagcagtcgaggttgcccccggtggccgtgcc 781

                             
Query: 238 aagcatgccgcagtagcg 255
           ||||||||||||||||||
Sbjct: 780 aagcatgccgcagtagcg 763



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 28  cataatttgttacaacaacttactcgtattatcatac 64
           ||||||||||| ||||||||||||||||||| |||||
Sbjct: 955 cataatttgttgcaacaacttactcgtattaccatac 919
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>dbj|AB029934.1| Triticum aestivum Chi 1 mRNA for chitinase 1, complete cds
          Length = 979

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                       
Query: 180 tctagctagcgaagtttccctgggtgtaacagtcgaggttgcctccggtggccgtgccaa 239
           |||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 848 tctagctagcgaagttcctctgggtgtagcagtcgaggttgcctccggtggccgtgccga 789

                            
Query: 240 gcatgccgcagtagcgc 256
           |||||||||||||||||
Sbjct: 788 gcatgccgcagtagcgc 772
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>emb|X78671.1|HVCHT2A H.vulgare mRNA for chitinase 2a
          Length = 1028

 Score =  105 bits (53), Expect = 7e-20
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                       
Query: 180 tctagctagcgaagtttccctgggtgtaacagtcgaggttgcctccggtggccgtgccaa 239
           |||||||||||||||| |  |||||||| |||||||||||||| |||||||||||||| |
Sbjct: 830 tctagctagcgaagttccgttgggtgtagcagtcgaggttgcccccggtggccgtgccga 771

                            
Query: 240 gcatgccgcagtagcgc 256
           |||||||||||||||||
Sbjct: 770 gcatgccgcagtagcgc 754



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 62/71 (87%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                        
Query: 7    atgattttattgaacaatttacataatttgttacaacaacttactcgtattatcatacga 66
            |||||||||||||||| |||||||||| |||||| || |||  ||||||||| || ||||
Sbjct: 1001 atgattttattgaacactttacataatctgttacgacgact--ctcgtattaccacacga 944

                       
Query: 67   cacgatcaact 77
            ||| |||||||
Sbjct: 943  caccatcaact 933



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 145 tttattcgtaacacgtgcatacact 169
           |||||||||||||||||||||||||
Sbjct: 880 tttattcgtaacacgtgcatacact 856
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>gb|L40336.1|RICCHITB Oryza sativa chitinase (Rcht2) gene, complete cds
          Length = 5595

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 67/77 (87%), Gaps = 2/77 (2%)
 Strand = Plus / Minus

                                                                        
Query: 181  ctagctagcgaagtttccctgggtgtaacagtcgaggttgcctccggtggcc-gtgccaa 239
            |||||| |||||||||| |||| |||| |||||||||||| |||| || ||| ||||| |
Sbjct: 4865 ctagctggcgaagtttcgctggttgtagcagtcgaggttg-ctcccgtagcctgtgccga 4807

                             
Query: 240  gcatgccgcagtagcgc 256
            ||||| |||||||||||
Sbjct: 4806 gcatgtcgcagtagcgc 4790
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>gb|L40338.1|RICRCH0 Oryza sativa (clone RCH08) chitinase (Rcht2) mRNA, 3' end of cds
          Length = 652

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 67/77 (87%), Gaps = 2/77 (2%)
 Strand = Plus / Minus

                                                                       
Query: 181 ctagctagcgaagtttccctgggtgtaacagtcgaggttgcctccggtggcc-gtgccaa 239
           |||||| |||||||||| |||| |||| |||||||||||| |||| || ||| ||||| |
Sbjct: 528 ctagctggcgaagtttcgctggttgtagcagtcgaggttg-ctcccgtagcctgtgccga 470

                            
Query: 240 gcatgccgcagtagcgc 256
           ||||| |||||||||||
Sbjct: 469 gcatgtcgcagtagcgc 453
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>gb|AF013580.1|AF013580 Oryza sativa clone RGCH8 chitinase gene, complete cds
          Length = 2730

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 58/67 (86%), Gaps = 2/67 (2%)
 Strand = Plus / Minus

                                                                        
Query: 191  aagtttccctgggtgtaacagtcgaggttgcctccggtggcc-gtgccaagcatgccgca 249
            ||||||| |||| |||| |||||||||||| |||| || ||| ||||| |||||| ||||
Sbjct: 2305 aagtttcgctggttgtagcagtcgaggttg-ctcccgtagcctgtgccgagcatgtcgca 2247

                   
Query: 250  gtagcgc 256
            |||||||
Sbjct: 2246 gtagcgc 2240
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>gb|AF001500.1|OSAF001500 Oryza sativa clone MIRCH1 chitinase mRNA, partial cds
          Length = 913

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 58/67 (86%), Gaps = 2/67 (2%)
 Strand = Plus / Minus

                                                                       
Query: 191 aagtttccctgggtgtaacagtcgaggttgcctccggtggcc-gtgccaagcatgccgca 249
           ||||||| |||| |||| |||||||||||| |||| || ||| ||||| |||||| ||||
Sbjct: 765 aagtttcgctggttgtagcagtcgaggttg-ctcccgtagcctgtgccgagcatgtcgca 707

                  
Query: 250 gtagcgc 256
           |||||||
Sbjct: 706 gtagcgc 700
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>emb|BX547936.5| Mouse DNA sequence from clone RP23-109A11 on chromosome X, complete
            sequence
          Length = 70333

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 88   tcgaattatttatttcatgatg 109
            ||||||||||||||||||||||
Sbjct: 5730 tcgaattatttatttcatgatg 5751
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>ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chitinase
           (OSJNBb0015I11.14), mRNA
          Length = 924

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 181 ctagctagcgaagtttccctgggtgtaacagtcgaggttgc 221
           |||||| |||||||| | |||| |||| |||||||||||||
Sbjct: 786 ctagctggcgaagttgcgctggttgtagcagtcgaggttgc 746
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>emb|BX897692.16| Zebrafish DNA sequence from clone DKEY-34F9 in linkage group 9,
             complete sequence
          Length = 185941

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    aatttacataatttgttacaa 42
             |||||||||||||||||||||
Sbjct: 54399 aatttacataatttgttacaa 54419
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>gb|AC010303.7| Homo sapiens chromosome 5 clone CTB-37A13, complete sequence
          Length = 86533

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tatgattttattgaacaattt 26
             |||||||||||||||||||||
Sbjct: 44216 tatgattttattgaacaattt 44196
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
             sequence
          Length = 138824

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 181   ctagctagcgaagtttccctgggtgtaacagtcgaggttgc 221
             |||||| |||||||| | |||| |||| |||||||||||||
Sbjct: 89627 ctagctggcgaagttgcgctggttgtagcagtcgaggttgc 89587
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>gb|AC008449.6| Homo sapiens chromosome 5 clone CTC-341A9, complete sequence
          Length = 124405

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      tatgattttattgaacaattt 26
              |||||||||||||||||||||
Sbjct: 118118 tatgattttattgaacaattt 118098
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>dbj|AK019531.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4833447P13 product:hypothetical protein,
            full insert sequence
          Length = 2494

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 15   attgaacaatttacataatttgtta 39
            ||||||||||||||||| |||||||
Sbjct: 1609 attgaacaatttacatattttgtta 1585
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>dbj|AK034771.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430035E05 product:hypothetical protein, full
            insert sequence
          Length = 1772

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 15   attgaacaatttacataatttgtta 39
            ||||||||||||||||| |||||||
Sbjct: 1614 attgaacaatttacatattttgtta 1590
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>dbj|AK042445.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630092F18 product:unclassifiable, full
            insert sequence
          Length = 2235

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 15   attgaacaatttacataatttgtta 39
            ||||||||||||||||| |||||||
Sbjct: 1491 attgaacaatttacatattttgtta 1467
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 181      ctagctagcgaagtttccctgggtgtaacagtcgaggttgc 221
                |||||| |||||||| | |||| |||| |||||||||||||
Sbjct: 20688175 ctagctggcgaagttgcgctggttgtagcagtcgaggttgc 20688135
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>gb|AC136966.2| Bos taurus clone RP42-221D7, complete sequence
          Length = 158113

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    tttattgaacaatttacataa 32
             |||||||||||||||||||||
Sbjct: 87248 tttattgaacaatttacataa 87228
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>dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L15, full
           insert sequence
          Length = 1073

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 181 ctagctagcgaagtttccctgggtgtaacagtcgaggttgc 221
           |||||| |||||||| | |||| |||| |||||||||||||
Sbjct: 812 ctagctggcgaagttgcgctggttgtagcagtcgaggttgc 772
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>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205164

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 15     attgaacaatttacataatttgtta 39
              ||||||||||||||||| |||||||
Sbjct: 108005 attgaacaatttacatattttgtta 107981
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 181      ctagctagcgaagtttccctgggtgtaacagtcgaggttgc 221
                |||||| |||||||| | |||| |||| |||||||||||||
Sbjct: 20699447 ctagctggcgaagttgcgctggttgtagcagtcgaggttgc 20699407
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>dbj|AB016497.1| Oryza sativa mRNA for chitinase, complete cds
          Length = 923

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 181 ctagctagcgaagtttccctgggtgtaacagtcgaggttgc 221
           |||||| |||||||| | |||| |||| |||||||||||||
Sbjct: 792 ctagctggcgaagttgcgctggttgtagcagtcgaggttgc 752
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 7       atgattttattgaacaattt 26
               ||||||||||||||||||||
Sbjct: 1599507 atgattttattgaacaattt 1599488
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>gb|AC139334.3| Mus musculus BAC clone RP23-449C21 from chromosome 18, complete sequence
          Length = 194665

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     attatttatttcatgatggg 111
              ||||||||||||||||||||
Sbjct: 116014 attatttatttcatgatggg 115995
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 7       atgattttattgaacaattt 26
               ||||||||||||||||||||
Sbjct: 1614247 atgattttattgaacaattt 1614266
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>emb|BX470263.9| Zebrafish DNA sequence from clone DKEY-15P9 in linkage group 9, complete
              sequence
          Length = 176022

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     attttattgaacaatttacataat 33
              |||||||||||||||||| |||||
Sbjct: 138092 attttattgaacaatttatataat 138069
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 7       atgattttattgaacaattt 26
               ||||||||||||||||||||
Sbjct: 1617937 atgattttattgaacaattt 1617956
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>gb|AC112233.3| Homo sapiens BAC clone RP11-211G17 from 4, complete sequence
          Length = 51878

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 16    ttgaacaatttacataatttgttacaac 43
             ||||||||||| ||||| ||||||||||
Sbjct: 50846 ttgaacaatttccataaattgttacaac 50819
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>gb|AC010435.6| Homo sapiens chromosome 5 clone CTD-2210P15, complete sequence
          Length = 149207

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     atttacataatttgttacaa 42
              ||||||||||||||||||||
Sbjct: 109553 atttacataatttgttacaa 109534
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>dbj|AK154042.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430027L23
           product:Warning: possibly chimeric clone, full insert
           sequence
          Length = 1946

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   atgattttattgaacaattt 26
           ||||||||||||||||||||
Sbjct: 592 atgattttattgaacaattt 611
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>gb|AC108016.5| Homo sapiens BAC clone RP13-1015A13 from 4, complete sequence
          Length = 162715

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 16  ttgaacaatttacataatttgttacaac 43
           ||||||||||| ||||| ||||||||||
Sbjct: 968 ttgaacaatttccataaattgttacaac 941
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 7       atgattttattgaacaattt 26
               ||||||||||||||||||||
Sbjct: 1639158 atgattttattgaacaattt 1639139
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>gb|AC137976.13| Mus musculus chromosome 8, clone RP23-262K12, complete sequence
          Length = 238720

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     atgattttattgaacaattt 26
             ||||||||||||||||||||
Sbjct: 13753 atgattttattgaacaattt 13734
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 8       tgattttattgaacaattta 27
               ||||||||||||||||||||
Sbjct: 4940088 tgattttattgaacaattta 4940069
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>gb|AC125358.4| Mus musculus BAC clone RP23-256E3 from 8, complete sequence
          Length = 177236

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      atgattttattgaacaattt 26
              ||||||||||||||||||||
Sbjct: 122096 atgattttattgaacaattt 122077
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>dbj|AP006077.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT46B01, TM0116,
              complete sequence
          Length = 121207

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     atttacataatttgttacaa 42
              ||||||||||||||||||||
Sbjct: 111094 atttacataatttgttacaa 111075
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 7       atgattttattgaacaattt 26
               ||||||||||||||||||||
Sbjct: 1494573 atgattttattgaacaattt 1494592
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 7       atgattttattgaacaattt 26
               ||||||||||||||||||||
Sbjct: 1631715 atgattttattgaacaattt 1631734
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 7       atgattttattgaacaattt 26
               ||||||||||||||||||||
Sbjct: 1681803 atgattttattgaacaattt 1681784


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,275,806
Number of Sequences: 3902068
Number of extensions: 2275806
Number of successful extensions: 49866
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 49735
Number of HSP's gapped (non-prelim): 129
length of query: 256
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 234
effective length of database: 17,147,199,772
effective search space: 4012444746648
effective search space used: 4012444746648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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