Clone Name | rbart46c08 |
---|---|
Clone Library Name | barley_pub |
>gb|AF321856.1|AF321856 Lolium rigidum clone FHH-t putative cytochrome P450 mRNA, complete cds Length = 1775 Score = 200 bits (101), Expect = 2e-48 Identities = 188/217 (86%) Strand = Plus / Minus Query: 157 tgaaggacatcgcgcatggcagcacgcggcctacacacggcctccaaagccacggacttg 216 ||||| || ||||||||| | || |||||||| |||||||||||||| | ||||| ||| Sbjct: 1575 tgaagcacgtcgcgcatgaccgcgcgcggcctgcacacggcctccaacggcacggccttt 1516 Query: 217 ggcatggtgatccccaccccctccgtcatgtccacctccacgccgtccacccgatcccag 276 || ||||||| ||| ||||||||||||||||||||| ||||||||||||| | |||||| Sbjct: 1515 gggatggtgaaccctcccccctccgtcatgtccaccttcacgccgtccaccggttcccag 1456 Query: 277 tcgaagcactgcaccagcatcccgagaacaaccccgaccgtctgcagcgccagcgcctcg 336 |||||||||||||||||| || | || || | |||| |||| |||||||||||| ||| Sbjct: 1455 tcgaagcactgcaccagcgtcgccaggaccattccgatcgtccgcagcgccagcgtctcc 1396 Query: 337 ccggggcacctccgccgccccatcccgaacggcatca 373 |||||||||||||||||||||||||||||||| |||| Sbjct: 1395 ccggggcacctccgccgccccatcccgaacggtatca 1359
>gb|AF321857.1|AF321857 Lolium rigidum clone FHH-y putative cytochrome P450 mRNA, complete cds Length = 1810 Score = 192 bits (97), Expect = 6e-46 Identities = 187/217 (86%) Strand = Plus / Minus Query: 157 tgaaggacatcgcgcatggcagcacgcggcctacacacggcctccaaagccacggacttg 216 ||||| || ||||||||| | || |||||||| |||||||||||||| | ||||| ||| Sbjct: 1581 tgaagcacgtcgcgcatgaccgcgcgcggcctgcacacggcctccaacggcacggccttt 1522 Query: 217 ggcatggtgatccccaccccctccgtcatgtccacctccacgccgtccacccgatcccag 276 || ||||||| ||| ||||||||||||||||||| | ||||||||||||| | |||||| Sbjct: 1521 gggatggtgaaccctcccccctccgtcatgtccacattcacgccgtccaccggttcccag 1462 Query: 277 tcgaagcactgcaccagcatcccgagaacaaccccgaccgtctgcagcgccagcgcctcg 336 |||||||||||||||||| || | || || | |||| |||| |||||||||||| ||| Sbjct: 1461 tcgaagcactgcaccagcgtcgccaggaccattccgatcgtccgcagcgccagcgtctcc 1402 Query: 337 ccggggcacctccgccgccccatcccgaacggcatca 373 |||||||||||||||||||||||||||||||| |||| Sbjct: 1401 ccggggcacctccgccgccccatcccgaacggtatca 1365
>dbj|AB159038.1| Lolium rigidum mRNA for P450, complete cds, clone:CYP81B1v2 Length = 1554 Score = 192 bits (97), Expect = 6e-46 Identities = 169/193 (87%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||||||||||||| | ||||| ||| || ||||||| ||| |||||||| Sbjct: 1520 cgcggcctgcacacggcctccaacggcacggcctttgggatggtgaaccctcccccctcc 1461 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 ||||||||||||| ||||||||||||| | |||||||||||||||||||||||| || | Sbjct: 1460 gtcatgtccaccttcacgccgtccaccggttcccagtcgaagcactgcaccagcgtcgcc 1401 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | |||| |||| |||||||||||| ||| |||||||||||||||||||||||| Sbjct: 1400 aggaccattccgatcgtccgcagcgccagcgtctccccggggcacctccgccgccccatc 1341 Query: 361 ccgaacggcatca 373 |||||||| |||| Sbjct: 1340 ccgaacggtatca 1328
>dbj|AB159037.1| Lolium rigidum mRNA for P450, complete cds, clone:CYP81B1v1 Length = 1554 Score = 192 bits (97), Expect = 6e-46 Identities = 187/217 (86%) Strand = Plus / Minus Query: 157 tgaaggacatcgcgcatggcagcacgcggcctacacacggcctccaaagccacggacttg 216 ||||| || ||||||||| | || |||||||| |||||||||||||| | ||||| ||| Sbjct: 1544 tgaagcacgtcgcgcatgaccgcgcgcggcctgcacacggcctccaacggcacggccttt 1485 Query: 217 ggcatggtgatccccaccccctccgtcatgtccacctccacgccgtccacccgatcccag 276 || ||||||| ||| ||||||||||||||||||||| ||||||||||||| | |||||| Sbjct: 1484 gggatggtgaaccctcccccctccgtcatgtccaccttcacgccgtccaccggttcccag 1425 Query: 277 tcgaagcactgcaccagcatcccgagaacaaccccgaccgtctgcagcgccagcgcctcg 336 |||||||||||||||||| || | || || | |||| ||| |||||||||||| ||| Sbjct: 1424 tcgaagcactgcaccagcgtcgccaggaccattccgatggtccgcagcgccagcgtctcc 1365 Query: 337 ccggggcacctccgccgccccatcccgaacggcatca 373 |||||||||||||||||||||||||||||||| |||| Sbjct: 1364 ccggggcacctccgccgccccatcccgaacggtatca 1328
>gb|AF321855.1|AF321855 Lolium rigidum clone FHH-v putative cytochrome P450 mRNA, complete cds Length = 1795 Score = 161 bits (81), Expect = 2e-36 Identities = 165/193 (85%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||||||||||||| | ||||| ||| || ||||||| ||| ||||||| Sbjct: 1551 cgcggcctgcacacggcctccaacggcacggcctttgggatggtgaaccctcccccctct 1492 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 ||||||||||||| ||||||||||||| | |||||||||||||||||||||||| || | Sbjct: 1491 gtcatgtccaccttcacgccgtccaccggttcccagtcgaagcactgcaccagcgtcgcc 1432 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | |||| |||| | || || |||| ||| |||||||||||||||||||||||| Sbjct: 1431 aggaccatgccgatcgtccgtagtgctagcgtctctccggggcacctccgccgccccatc 1372 Query: 361 ccgaacggcatca 373 |||||||| |||| Sbjct: 1371 ccgaacggtatca 1359
>dbj|AB159039.1| Lolium rigidum mRNA for P450, complete cds, clone:CYP81B1v3 Length = 1554 Score = 161 bits (81), Expect = 2e-36 Identities = 177/209 (84%) Strand = Plus / Minus Query: 157 tgaaggacatcgcgcatggcagcacgcggcctacacacggcctccaaagccacggacttg 216 ||||| || ||||||||| | || |||||||| |||||||||||||| | ||||| ||| Sbjct: 1544 tgaagcacgtcgcgcatgaccgcgcgcggcctgcacacggcctccaacggcacggccttt 1485 Query: 217 ggcatggtgatccccaccccctccgtcatgtccacctccacgccgtccacccgatcccag 276 || ||||||| ||| ||||||||||||||||||||| ||||||||||||| | |||||| Sbjct: 1484 gggatggtgaaccctcccccctccgtcatgtccaccttcacgccgtccaccggttcccag 1425 Query: 277 tcgaagcactgcaccagcatcccgagaacaaccccgaccgtctgcagcgccagcgcctcg 336 |||||||||||||||||| || | || || | | || ||| | |||||||||| ||| Sbjct: 1424 tcgaagcactgcaccagcgtcgctaggaccatgctgattgtccgtagcgccagcgtctcc 1365 Query: 337 ccggggcacctccgccgccccatcccgaa 365 |||||||||||||||||||||| |||||| Sbjct: 1364 ccggggcacctccgccgccccaccccgaa 1336
>ref|XM_469849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1539 Score = 151 bits (76), Expect = 2e-33 Identities = 163/192 (84%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||||||||||||| | |||| |||||||||||||| ||| | ||||| Sbjct: 1505 cgcggcctgcacacggcctccaacggcacgaccttgggcatggtgagcccgccaccctca 1446 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 | |||||| ||||||||||| || |||| ||||||||||||||||| | |||| | || Sbjct: 1445 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 1386 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| ||||| ||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 1385 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 1326 Query: 361 ccgaacggcatc 372 |||||||||||| Sbjct: 1325 ccgaacggcatc 1314
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 151 bits (76), Expect = 2e-33 Identities = 163/192 (84%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||||||||||||| | |||| |||||||||||||| ||| | ||||| Sbjct: 31135229 cgcggcctgcacacggcctccaacggcacgaccttgggcatggtgagcccgccaccctca 31135170 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 | |||||| ||||||||||| || |||| ||||||||||||||||| | |||| | || Sbjct: 31135169 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 31135110 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| ||||| ||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 31135109 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 31135050 Query: 361 ccgaacggcatc 372 |||||||||||| Sbjct: 31135049 ccgaacggcatc 31135038 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||| ||||||||| | |||| |||||| ||||||| ||| | || || Sbjct: 31141814 cgcggcctgcacatggcctccaacggcacgaccttggggatggtgagcccgccaccttca 31141755 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 |||||||| |||||||||||||| |||| ||||||||||||||||| | |||| | || Sbjct: 31141754 gtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactggatcagcgtgccc 31141695 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| || || |||||||||||| |||||||||||||||||||| ||||||| Sbjct: 31141694 agcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctccgcctccccatc 31141635 Query: 361 ccgaacggcatca 373 ||||||||||||| Sbjct: 31141634 ccgaacggcatca 31141622
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 151 bits (76), Expect = 2e-33 Identities = 163/192 (84%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||||||||||||| | |||| |||||||||||||| ||| | ||||| Sbjct: 55870 cgcggcctgcacacggcctccaacggcacgaccttgggcatggtgagcccgccaccctca 55811 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 | |||||| ||||||||||| || |||| ||||||||||||||||| | |||| | || Sbjct: 55810 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 55751 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| ||||| ||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 55750 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 55691 Query: 361 ccgaacggcatc 372 |||||||||||| Sbjct: 55690 ccgaacggcatc 55679 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||| ||||||||| | |||| |||||| ||||||| ||| | || || Sbjct: 62455 cgcggcctgcacatggcctccaacggcacgaccttggggatggtgagcccgccaccttca 62396 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 |||||||| |||||||||||||| |||| ||||||||||||||||| | |||| | || Sbjct: 62395 gtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactggatcagcgtgccc 62336 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| || || |||||||||||| |||||||||||||||||||| ||||||| Sbjct: 62335 agcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctccgcctccccatc 62276 Query: 361 ccgaacggcatca 373 ||||||||||||| Sbjct: 62275 ccgaacggcatca 62263
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 151 bits (76), Expect = 2e-33 Identities = 163/192 (84%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||||||||||||| | |||| |||||||||||||| ||| | ||||| Sbjct: 31225752 cgcggcctgcacacggcctccaacggcacgaccttgggcatggtgagcccgccaccctca 31225693 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 | |||||| ||||||||||| || |||| ||||||||||||||||| | |||| | || Sbjct: 31225692 gccatgtcgacctccacgccatcgaccctctcccagtcgaagcactggatcagcgtgccc 31225633 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| ||||| ||||| ||||||| |||||||||||||||||||| ||||||| Sbjct: 31225632 agcaccagccccaccgtgtgcagagccagcgtctcgccggggcacctccgcctccccatc 31225573 Query: 361 ccgaacggcatc 372 |||||||||||| Sbjct: 31225572 ccgaacggcatc 31225561 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||| ||||||||| | |||| |||||| ||||||| ||| | || || Sbjct: 31232337 cgcggcctgcacatggcctccaacggcacgaccttggggatggtgagcccgccaccttca 31232278 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 |||||||| |||||||||||||| |||| ||||||||||||||||| | |||| | || Sbjct: 31232277 gtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactggatcagcgtgccc 31232218 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| || || |||||||||||| |||||||||||||||||||| ||||||| Sbjct: 31232217 agcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctccgcctccccatc 31232158 Query: 361 ccgaacggcatca 373 ||||||||||||| Sbjct: 31232157 ccgaacggcatca 31232145
>ref|XM_469850.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2199 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||| ||||||||| | |||| |||||| ||||||| ||| | || || Sbjct: 2162 cgcggcctgcacatggcctccaacggcacgaccttggggatggtgagcccgccaccttca 2103 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 |||||||| |||||||||||||| |||| ||||||||||||||||| | |||| | || Sbjct: 2102 gtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactggatcagcgtgccc 2043 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| || || |||||||||||| |||||||||||||||||||| ||||||| Sbjct: 2042 agcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctccgcctccccatc 1983 Query: 361 ccgaacggcatca 373 ||||||||||||| Sbjct: 1982 ccgaacggcatca 1970
>gb|DQ341412.1| Oryza sativa (indica cultivar-group) bentazon and sulfonylurea-resistant protein (Bel) gene, promoter region and complete cds Length = 4187 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||| ||||||||| | |||| |||||| ||||||| ||| | || || Sbjct: 3590 cgcggcctgcacatggcctccaacggcacgaccttggggatggtgagcccgccaccttca 3531 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 |||||||| |||||||||||||| |||| ||||||||||||||||| | |||| | || Sbjct: 3530 gtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactggatcagcgtgccc 3471 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| || || |||||||||||| |||||||||||||||||||| ||||||| Sbjct: 3470 agcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctccgcctccccatc 3411 Query: 361 ccgaacggcatca 373 ||||||||||||| Sbjct: 3410 ccgaacggcatca 3398
>dbj|AK104825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F09, full insert sequence Length = 1860 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||| ||||||||| | |||| |||||| ||||||| ||| | || || Sbjct: 1557 cgcggcctgcacatggcctccaacggcacgaccttggggatggtgagcccgccaccttca 1498 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 |||||||| |||||||||||||| |||| ||||||||||||||||| | |||| | || Sbjct: 1497 gtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactggatcagcgtgccc 1438 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| || || |||||||||||| |||||||||||||||||||| ||||||| Sbjct: 1437 agcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctccgcctccccatc 1378 Query: 361 ccgaacggcatca 373 ||||||||||||| Sbjct: 1377 ccgaacggcatca 1365
>dbj|AK066760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G04, full insert sequence Length = 1867 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 181 cgcggcctacacacggcctccaaagccacggacttgggcatggtgatccccaccccctcc 240 |||||||| |||| ||||||||| | |||| |||||| ||||||| ||| | || || Sbjct: 1558 cgcggcctgcacatggcctccaacggcacgaccttggggatggtgagcccgccaccttca 1499 Query: 241 gtcatgtccacctccacgccgtccacccgatcccagtcgaagcactgcaccagcatcccg 300 |||||||| |||||||||||||| |||| ||||||||||||||||| | |||| | || Sbjct: 1498 gtcatgtcgacctccacgccgtcgaccctctcccagtcgaagcactggatcagcgtgccc 1439 Query: 301 agaacaaccccgaccgtctgcagcgccagcgcctcgccggggcacctccgccgccccatc 360 || || | ||| || || |||||||||||| |||||||||||||||||||| ||||||| Sbjct: 1438 agcaccaaccccactgtgcgcagcgccagcgtctcgccggggcacctccgcctccccatc 1379 Query: 361 ccgaacggcatca 373 ||||||||||||| Sbjct: 1378 ccgaacggcatca 1366
>gb|AY109406.1| Zea mays CL377_1 mRNA sequence Length = 1784 Score = 89.7 bits (45), Expect = 6e-15 Identities = 90/105 (85%) Strand = Plus / Minus Query: 271 tcccagtcgaagcactgcaccagcatcccgagaacaaccccgaccgtctgcagcgccagc 330 ||||||||||||||||| | |||| | |||| || | |||||| ||| ||||||| ||| Sbjct: 1503 tcccagtcgaagcactggagcagcgtggcgagcaccagcccgacggtccgcagcgcgagc 1444 Query: 331 gcctcgccggggcacctccgccgccccatcccgaacggcatcagc 375 | ||| ||||||||| | ||||||||||||||||||||||||||| Sbjct: 1443 gtctccccggggcacttgcgccgccccatcccgaacggcatcagc 1399
>gb|AY110147.1| Zea mays CL377_-3 mRNA sequence Length = 620 Score = 54.0 bits (27), Expect = 3e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 320 gcagcgccagcgcctcgccggggcacctccgccgccccatcccgaacggca 370 ||||||| || | ||| ||||||||||| ||||| |||||||||||||||| Sbjct: 309 gcagcgcgagtgtctccccggggcacctgcgccgtcccatcccgaacggca 259
>ref|XM_472908.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1530 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Minus Query: 335 cgccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| |||| |||||| ||||||||||||| |||| Sbjct: 1351 cgccggggcatctcctccgcccgatcccgaacggcaccagc 1311
>ref|XM_472907.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1557 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Minus Query: 335 cgccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| |||| |||||| ||||||||||||| |||| Sbjct: 1378 cgccggggcagctcctccgcccgatcccgaacggcaccagc 1338
>ref|XM_471339.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1641 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 332 cctcgccggggcacctccgccgccccatcccgaacgg 368 |||| |||||||||| |||||| |||||||||||||| Sbjct: 1432 cctccccggggcaccgccgccggcccatcccgaacgg 1396
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 335 cgccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| |||| |||||| ||||||||||||| |||| Sbjct: 21609 cgccggggcatctcctccgcccgatcccgaacggcaccagc 21649 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 335 cgccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| |||| |||||| ||||||||||||| |||| Sbjct: 16845 cgccggggcagctcctccgcccgatcccgaacggcaccagc 16885
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 335 cgccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| |||| |||||| ||||||||||||| |||| Sbjct: 24024630 cgccggggcatctcctccgcccgatcccgaacggcaccagc 24024670 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 335 cgccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| |||| |||||| ||||||||||||| |||| Sbjct: 24019866 cgccggggcagctcctccgcccgatcccgaacggcaccagc 24019906 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 332 cctcgccggggcacctccgccgccccatcccgaacgg 368 |||| |||||||||| |||||| |||||||||||||| Sbjct: 10202916 cctccccggggcaccgccgccggcccatcccgaacgg 10202880
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 337 ccggggcacctccgccgccccatcccgaacggcatca 373 ||||||||| |||||||||||| ||||||||||||| Sbjct: 490279 ccggggcacatccgccgccccacgccgaacggcatca 490243
>emb|AL606630.3|OSJN00041 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0046P18, complete sequence Length = 140780 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 332 cctcgccggggcacctccgccgccccatcccgaacgg 368 |||| |||||||||| |||||| |||||||||||||| Sbjct: 74327 cctccccggggcaccgccgccggcccatcccgaacgg 74291
>emb|AL731578.2|OSJN00229 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017P10, complete sequence Length = 175563 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 332 cctcgccggggcacctccgccgccccatcccgaacgg 368 |||| |||||||||| |||||| |||||||||||||| Sbjct: 27131 cctccccggggcaccgccgccggcccatcccgaacgg 27095
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 337 ccggggcacctccgccgccccatcccgaacggcatca 373 ||||||||| |||||||||||| ||||||||||||| Sbjct: 86520 ccggggcacatccgccgccccacgccgaacggcatca 86484
>dbj|AK121175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082O06, full insert sequence Length = 1733 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Minus Query: 335 cgccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| |||| |||||| ||||||||||||| |||| Sbjct: 1410 cgccggggcatctcctccgcccgatcccgaacggcaccagc 1370
>dbj|AK099951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123G02, full insert sequence Length = 1700 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 337 ccggggcacctccgccgccccatcccgaacggcatca 373 ||||||||| |||||||||||| ||||||||||||| Sbjct: 1368 ccggggcacatccgccgccccacgccgaacggcatca 1332
>dbj|AK063679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E04, full insert sequence Length = 737 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 335 cgccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| |||| |||||| ||||||||||||| |||| Sbjct: 93 cgccggggcatctcctccgcccgatcccgaacggcaccagc 133
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.081 Identities = 35/39 (89%) Strand = Plus / Plus Query: 332 cctcgccggggcacctccgccgccccatcccgaacggca 370 ||||||||||||||| |||||| || | ||||||||||| Sbjct: 24214409 cctcgccggggcaccgccgccggccgagcccgaacggca 24214447 Score = 44.1 bits (22), Expect = 0.32 Identities = 37/42 (88%) Strand = Plus / Plus Query: 332 cctcgccggggcacctccgccgccccatcccgaacggcatca 373 |||| |||||||||| |||||| || | |||||||||||||| Sbjct: 24188751 cctccccggggcaccgccgccggccgagcccgaacggcatca 24188792
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.081 Identities = 41/47 (87%) Strand = Plus / Plus Query: 324 cgccagcgcctcgccggggcacctccgccgccccatcccgaacggca 370 |||||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 24148608 cgccagcgacgcgccggggcagatccgccgccccgacccgaacggca 24148654
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 46.1 bits (23), Expect = 0.081 Identities = 41/47 (87%) Strand = Plus / Plus Query: 324 cgccagcgcctcgccggggcacctccgccgccccatcccgaacggca 370 |||||||| | |||||||||| ||||||||||| ||||||||||| Sbjct: 82066 cgccagcgacgcgccggggcagatccgccgccccgacccgaacggca 82112
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.081 Identities = 35/39 (89%) Strand = Plus / Plus Query: 332 cctcgccggggcacctccgccgccccatcccgaacggca 370 ||||||||||||||| |||||| || | ||||||||||| Sbjct: 24142615 cctcgccggggcaccgccgccggccgagcccgaacggca 24142653 Score = 44.1 bits (22), Expect = 0.32 Identities = 37/42 (88%) Strand = Plus / Plus Query: 332 cctcgccggggcacctccgccgccccatcccgaacggcatca 373 |||| |||||||||| |||||| || | |||||||||||||| Sbjct: 24116957 cctccccggggcaccgccgccggccgagcccgaacggcatca 24116998
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 46.1 bits (23), Expect = 0.081 Identities = 35/39 (89%) Strand = Plus / Plus Query: 332 cctcgccggggcacctccgccgccccatcccgaacggca 370 ||||||||||||||| |||||| || | ||||||||||| Sbjct: 99100 cctcgccggggcaccgccgccggccgagcccgaacggca 99138 Score = 44.1 bits (22), Expect = 0.32 Identities = 37/42 (88%) Strand = Plus / Plus Query: 332 cctcgccggggcacctccgccgccccatcccgaacggcatca 373 |||| |||||||||| |||||| || | |||||||||||||| Sbjct: 73442 cctccccggggcaccgccgccggccgagcccgaacggcatca 73483
>gb|AC107614.3| Homo sapiens 3 BAC RP11-719A7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160917 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 acataggttatgccaagaagtt 140 |||||||||||||||||||||| Sbjct: 21544 acataggttatgccaagaagtt 21565
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 cgaccgtctgcagcgccagcg 331 ||||||||||||||||||||| Sbjct: 486883 cgaccgtctgcagcgccagcg 486863
>ref|XM_500518.1| Yarrowia lipolytica CLIB122, YALI0B05126g predicted mRNA Length = 1572 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 atgccaagaagttcgatcctc 148 ||||||||||||||||||||| Sbjct: 1235 atgccaagaagttcgatcctc 1255
>emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 in linkage group 10, complete sequence Length = 165086 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 aaactaataatgtacataggt 126 ||||||||||||||||||||| Sbjct: 113910 aaactaataatgtacataggt 113930
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 atgccaagaagttcgatcctc 148 ||||||||||||||||||||| Sbjct: 707030 atgccaagaagttcgatcctc 707050
>gb|AY541063.1| Nocardia uniformis subsp. tsuyamanensis monocyclic beta-lactam antibiotic nocardicin A biosynthesis gene cluster, partial sequence Length = 33451 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gcgccagcgcctcgccgggg 342 |||||||||||||||||||| Sbjct: 17685 gcgccagcgcctcgccgggg 17666
>gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, complete sequence Length = 148599 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aagaatcacatatgatggca 22 |||||||||||||||||||| Sbjct: 30209 aagaatcacatatgatggca 30190
>gb|AC113533.14| Mus musculus chromosome 5, clone RP23-52A21, complete sequence Length = 206930 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 atccccaccccctccgtcat 245 |||||||||||||||||||| Sbjct: 206851 atccccaccccctccgtcat 206870
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 gcagcgccagcgcctcgccggggc 343 ||||||| |||||||||||||||| Sbjct: 615299 gcagcgcgagcgcctcgccggggc 615322
>gb|AC089993.2| Bos taurus clone RP42-553M7, complete sequence Length = 162859 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 atttgaaaactaataatgta 119 |||||||||||||||||||| Sbjct: 53929 atttgaaaactaataatgta 53910
>gb|DP000008.1| Bos taurus target 1 genomic scaffold Length = 2072671 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 atttgaaaactaataatgta 119 |||||||||||||||||||| Sbjct: 1420435 atttgaaaactaataatgta 1420416
>gb|AY536252.1| Chlamydomonas reinhardtii chloroplast ATP-binding protein (Sabc) mRNA, complete cds; nuclear gene for chloroplast product Length = 2253 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 atgtccacctccacgccgtccacc 267 |||||||| ||||||||||||||| Sbjct: 430 atgtccacgtccacgccgtccacc 407
>ref|XM_381816.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01640.1) partial mRNA Length = 1422 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cctccgtcatgtccacctcc 255 |||||||||||||||||||| Sbjct: 258 cctccgtcatgtccacctcc 277
>gb|AF224317.1| Gallus gallus Frizzled-7 (cFz-7) mRNA, complete cds Length = 3090 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gcagcgccagcgcctcgccg 339 |||||||||||||||||||| Sbjct: 95 gcagcgccagcgcctcgccg 114
>gb|AC165444.2| Mus musculus BAC clone CH25-441A19 from chromosome 5, complete sequence Length = 98389 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 atccccaccccctccgtcat 245 |||||||||||||||||||| Sbjct: 64017 atccccaccccctccgtcat 63998
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gcagcgccagcgcctcgccg 339 |||||||||||||||||||| Sbjct: 1784278 gcagcgccagcgcctcgccg 1784259
>gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, complete sequence Length = 181930 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aagaatcacatatgatggca 22 |||||||||||||||||||| Sbjct: 70238 aagaatcacatatgatggca 70219
>emb|Z46914.1|PSSTS1 P.strobus STS mRNA for stilbene synthase (1411 bp) Length = 1411 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgcc 355 |||||||||||||||||||| Sbjct: 355 gccggggcacctccgccgcc 336
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 ccgtctgcagcgccagcgcctcgc 337 ||||||||||| |||||||||||| Sbjct: 338327 ccgtctgcagctccagcgcctcgc 338350
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 ccgtctgcagcgccagcgcctcgc 337 ||||||||||| |||||||||||| Sbjct: 63111 ccgtctgcagctccagcgcctcgc 63134
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 ccgtctgcagcgccagcgcctcgc 337 ||||||||||| |||||||||||| Sbjct: 308636 ccgtctgcagctccagcgcctcgc 308613
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 cgtctgcagcgccagcgcctcgcc 338 ||||| |||||||||||||||||| Sbjct: 1459890 cgtctccagcgccagcgcctcgcc 1459867
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| ||||||| ||| ||||||||||| |||| Sbjct: 16341618 gccggggcacatccgccggcccgacccgaacggcagcagc 16341579 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| ||||||| ||| ||||||||||| |||| Sbjct: 16335337 gccggggcacatccgccggcccgacccgaacggcagcagc 16335298
>ref|NM_204221.1| Gallus gallus frizzled homolog 7 (Drosophila) (FZD7), mRNA Length = 3090 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gcagcgccagcgcctcgccg 339 |||||||||||||||||||| Sbjct: 95 gcagcgccagcgcctcgccg 114
>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0046G12 Length = 189391 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| ||||||| ||| ||||||||||| |||| Sbjct: 30165 gccggggcacatccgccggcccgacccgaacggcagcagc 30126 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| ||||||| ||| ||||||||||| |||| Sbjct: 23884 gccggggcacatccgccggcccgacccgaacggcagcagc 23845
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| ||||||| ||| ||||||||||| |||| Sbjct: 158134 gccggggcacatccgccggcccgacccgaacggcagcagc 158095 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| ||||||| ||| ||||||||||| |||| Sbjct: 151853 gccggggcacatccgccggcccgacccgaacggcagcagc 151814
>dbj|AK111616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107D15, full insert sequence Length = 1825 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| ||||||| ||| ||||||||||| |||| Sbjct: 1425 gccggggcacatccgccggcccgacccgaacggcagcagc 1386
>dbj|AK100321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F15, full insert sequence Length = 3587 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 336 gccggggcacctccgccgccccatcccgaacggcatcagc 375 |||||||||| ||||||| ||| ||||||||||| |||| Sbjct: 3188 gccggggcacatccgccggcccgacccgaacggcagcagc 3149
>gb|AC005058.1|AC005058 Homo sapiens BAC clone CTB-54D4 from 7q31, complete sequence Length = 182256 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 100 atttgaaaactaataatgtacata 123 |||| ||||||||||||||||||| Sbjct: 48542 attttaaaactaataatgtacata 48565
>gb|AY109431.1| Zea mays CL313_1 mRNA sequence Length = 2617 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 tcccagtcgaagcactgcaccagc 294 ||||||| |||||||||||||||| Sbjct: 244 tcccagtggaagcactgcaccagc 221
>gb|AC119171.10| Mus musculus chromosome 8, clone RP23-201B1, complete sequence Length = 192853 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gttgctacatttgaaaacta 111 |||||||||||||||||||| Sbjct: 30221 gttgctacatttgaaaacta 30202
>gb|AC165410.4| Mus musculus chromosome 8, clone RP23-267F17, complete sequence Length = 163899 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 gttgctacatttgaaaacta 111 |||||||||||||||||||| Sbjct: 110532 gttgctacatttgaaaacta 110551
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gccagcgcctcgccggggca 344 |||||||||||||||||||| Sbjct: 476660 gccagcgcctcgccggggca 476641
>gb|U25056.1|SHU25056 Pseudorabies virus serine/threonine kinase (ULPK) gene, partial cds and alkaline nuclease (AN) gene, complete cds Length = 2360 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cgccagcgcctcgccggggc 343 |||||||||||||||||||| Sbjct: 1232 cgccagcgcctcgccggggc 1213 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,753,943 Number of Sequences: 3902068 Number of extensions: 2753943 Number of successful extensions: 51117 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50429 Number of HSP's gapped (non-prelim): 683 length of query: 375 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 353 effective length of database: 17,147,199,772 effective search space: 6052961519516 effective search space used: 6052961519516 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)