ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 297 2e-77
2dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic D... 297 2e-77
3dbj|AK065856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 2e-77
4dbj|AK061726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 2e-77
5gb|AY105723.1| Zea mays PCO102084 mRNA sequence 262 9e-67
6gb|AY112292.1| Zea mays CL379_2 mRNA sequence 54 4e-04
7ref|NM_120030.3| Arabidopsis thaliana phospholipase C AT4G38690 ... 50 0.007
8emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, ... 50 0.007
9emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BA... 50 0.007
10gb|AY091668.1| Arabidopsis thaliana AT4g38690/F20M13_250 mRNA, c... 50 0.007
11gb|AY070465.1| Arabidopsis thaliana AT4g38690/F20M13_250 mRNA, c... 50 0.007
12emb|BX826641.1|CNS0A415 Arabidopsis thaliana Full-length cDNA Co... 50 0.007
13gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana... 50 0.007
14emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, B... 50 0.007
15emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A stra... 46 0.10
16emb|AJ391262.1|NME391262 Neisseria meningitidis DNA for region 9... 46 0.10
17gb|AE002098.2| Neisseria meningitidis MC58, complete genome 46 0.10
18gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 44 0.41
19ref|XM_472988.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
20emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 1.6
23emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
24gb|AE010411.1| Methanopyrus kandleri AV19 section 110 of 157 of ... 40 6.4
25ref|NM_192584.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
26gb|DP000015.1| Xenopus tropicalis target 1 genomic scaffold 40 6.4
27gb|AY023731.1| Oryza sativa microsatellite MRG6056 containing (A... 40 6.4
28gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, compl... 40 6.4
29gb|AC113988.8| Mus musculus chromosome 3, clone RP24-129H9, comp... 40 6.4
30gb|AE007215.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.4
31gb|AF348412.2| Zea mays cytosolic aldehyde dehydrogenase RF2C (r... 40 6.4
32emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.4
33emb|AL357506.10| Human DNA sequence from clone RP11-327K21 on ch... 40 6.4
34emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.4
35emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 40 6.4
36gb|AF191071.3| Homo sapiens chromosome 8 clone GS1-388D06 map 8u... 40 6.4
37emb|Z13972.1|NLCMCPBP N.lactamdurans cmcPBP gene 40 6.4
38dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.4
39gb|AE011796.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.4
40gb|AC090675.10| Homo sapiens 12 BAC RP11-681A17 (Roswell Park Ca... 40 6.4
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
43gb|AF348415.2| Zea mays cytosolic aldehyde dehydrogenase RF2D (r... 40 6.4
44dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.4
45gb|AF348413.1| Zea mays cytosolic aldehyde dehydrogenase RF2C (r... 40 6.4
46dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.4
47dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
48dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
49dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
50dbj|AK105781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
51dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
52dbj|AK100361.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
53dbj|AK066614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
54gb|AC149515.2| Xenopus tropicalis clone CH216-35C7, complete seq... 40 6.4
55gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.4
56gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.4

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  297 bits (150), Expect = 2e-77
 Identities = 293/340 (86%), Gaps = 3/340 (0%)
 Strand = Plus / Plus

                                                                            
Query: 133      tctcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 192
                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20760070 tctcacgcggcgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 20760129

                                                                            
Query: 193      ccgtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcc 252
                |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||
Sbjct: 20760130 ccgtcgatgaagtcggtggagaacacctgcagcttgtcgccgaggcccttggcgaagacc 20760189

                                                                            
Query: 253      tgggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagc 312
                | ||||| ||| | ||| ||| ||| |||||| |||||||||||||||  ||||   |||
Sbjct: 20760190 tcggcgatgaagaggcgggcgtagccgtggatccgccgcgtgaccggccggacgcagagc 20760249

                                                                            
Query: 313      accgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcg 372
                ||||||||||||| ||||||||||| |||||||||||||||||| | |  ||||||| ||
Sbjct: 20760250 accgggttgtcggcctgcggcgtcaccgtgttctccacccggtagaagaacctccggtcg 20760309

                                                                            
Query: 373      gccgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggc 432
                ||| ||||    |||||||  |||||  ||  || |||||  || |||||  ||||||||
Sbjct: 20760310 gccaccgg---cggctgctcgccgaggaacttgacgttgctctcgaacttggtctccggc 20760366

                                                        
Query: 433      aggtccgtgttgatccagttgtcccgcaggtagcccgcgc 472
                ||||| |||| ||||||||||||||  |||||||| ||||
Sbjct: 20760367 aggtcggtgtcgatccagttgtccctgaggtagccggcgc 20760406



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>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0569E11
          Length = 157319

 Score =  297 bits (150), Expect = 2e-77
 Identities = 293/340 (86%), Gaps = 3/340 (0%)
 Strand = Plus / Plus

                                                                         
Query: 133   tctcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 192
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35099 tctcacgcggcgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 35158

                                                                         
Query: 193   ccgtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcc 252
             |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||
Sbjct: 35159 ccgtcgatgaagtcggtggagaacacctgcagcttgtcgccgaggcccttggcgaagacc 35218

                                                                         
Query: 253   tgggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagc 312
             | ||||| ||| | ||| ||| ||| |||||| |||||||||||||||  ||||   |||
Sbjct: 35219 tcggcgatgaagaggcgggcgtagccgtggatccgccgcgtgaccggccggacgcagagc 35278

                                                                         
Query: 313   accgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcg 372
             ||||||||||||| ||||||||||| |||||||||||||||||| | |  ||||||| ||
Sbjct: 35279 accgggttgtcggcctgcggcgtcaccgtgttctccacccggtagaagaacctccggtcg 35338

                                                                         
Query: 373   gccgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggc 432
             ||| ||||    |||||||  |||||  ||  || |||||  || |||||  ||||||||
Sbjct: 35339 gccaccgg---cggctgctcgccgaggaacttgacgttgctctcgaacttggtctccggc 35395

                                                     
Query: 433   aggtccgtgttgatccagttgtcccgcaggtagcccgcgc 472
             ||||| |||| ||||||||||||||  |||||||| ||||
Sbjct: 35396 aggtcggtgtcgatccagttgtccctgaggtagccggcgc 35435



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>dbj|AK065856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D02, full
            insert sequence
          Length = 1213

 Score =  297 bits (150), Expect = 2e-77
 Identities = 293/340 (86%), Gaps = 3/340 (0%)
 Strand = Plus / Minus

                                                                        
Query: 133  tctcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 192
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 tctcacgcggcgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 947

                                                                        
Query: 193  ccgtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcc 252
            |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||
Sbjct: 946  ccgtcgatgaagtcggtggagaacacctgcagcttgtcgccgaggcccttggcgaagacc 887

                                                                        
Query: 253  tgggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagc 312
            | ||||| ||| | ||| ||| ||| |||||| |||||||||||||||  ||||   |||
Sbjct: 886  tcggcgatgaagaggcgggcgtagccgtggatccgccgcgtgaccggccggacgcagagc 827

                                                                        
Query: 313  accgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcg 372
            ||||||||||||| ||||||||||| |||||||||||||||||| | |  ||||||| ||
Sbjct: 826  accgggttgtcggcctgcggcgtcaccgtgttctccacccggtagaagaacctccggtcg 767

                                                                        
Query: 373  gccgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggc 432
            ||| ||||    |||||||  |||||  ||  || |||||  || |||||  ||||||||
Sbjct: 766  gccaccgg---cggctgctcgccgaggaacttgacgttgctctcgaacttggtctccggc 710

                                                    
Query: 433  aggtccgtgttgatccagttgtcccgcaggtagcccgcgc 472
            ||||| |||| ||||||||||||||  |||||||| ||||
Sbjct: 709  aggtcggtgtcgatccagttgtccctgaggtagccggcgc 670



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>dbj|AK061726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B04, full
            insert sequence
          Length = 1477

 Score =  297 bits (150), Expect = 2e-77
 Identities = 293/340 (86%), Gaps = 3/340 (0%)
 Strand = Plus / Minus

                                                                        
Query: 133  tctcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 192
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 tctcacgcggcgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 1177

                                                                        
Query: 193  ccgtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcc 252
            |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||
Sbjct: 1176 ccgtcgatgaagtcggtggagaacacctgcagcttgtcgccgaggcccttggcgaagacc 1117

                                                                        
Query: 253  tgggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagc 312
            | ||||| ||| | ||| ||| ||| |||||| |||||||||||||||  ||||   |||
Sbjct: 1116 tcggcgatgaagaggcgggcgtagccgtggatccgccgcgtgaccggccggacgcagagc 1057

                                                                        
Query: 313  accgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcg 372
            ||||||||||||| ||||||||||| |||||||||||||||||| | |  ||||||| ||
Sbjct: 1056 accgggttgtcggcctgcggcgtcaccgtgttctccacccggtagaagaacctccggtcg 997

                                                                        
Query: 373  gccgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggc 432
            ||| ||||    |||||||  |||||  ||  || |||||  || |||||  ||||||||
Sbjct: 996  gccaccgg---cggctgctcgccgaggaacttgacgttgctctcgaacttggtctccggc 940

                                                    
Query: 433  aggtccgtgttgatccagttgtcccgcaggtagcccgcgc 472
            ||||| |||| ||||||||||||||  |||||||| ||||
Sbjct: 939  aggtcggtgtcgatccagttgtccctgaggtagccggcgc 900



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>gb|AY105723.1| Zea mays PCO102084 mRNA sequence
          Length = 1551

 Score =  262 bits (132), Expect = 9e-67
 Identities = 275/322 (85%), Gaps = 3/322 (0%)
 Strand = Plus / Minus

                                                                        
Query: 135  tcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcgcc 194
            |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 1319 tcacgcggtgccatcgacgcgcgccttggtgactccggcgcaggcgtcgacgaagtcgcc 1260

                                                                        
Query: 195  gtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcctg 254
            ||||||||||||||||||||  |||||||||||| ||||||||||| |||||||||||| 
Sbjct: 1259 gtcgatgaagtcggtggagaagacctgcagcttgtcgccgaggcccttggcgaaggcctc 1200

                                                                        
Query: 255  ggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagcac 314
            ||||| ||| | ||||||| ||| |||||| |||  |||||| |||   |||  ||||||
Sbjct: 1199 ggcgatgaagaggcgcgcgtagccgtggatccgcttcgtgacgggccacacgcacagcac 1140

                                                                        
Query: 315  cgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcggc 374
            ||||||||||| ||  ||||||| |||||||||||||||||| | |  ||||||| ||||
Sbjct: 1139 cgggttgtcggccttgggcgtcaccgtgttctccacccggtagaagaacctccggtcggc 1080

                                                                        
Query: 375  cgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggcag 434
            | ||||    ||||||||||| ||  ||  ||||||||  || |||||  ||||||||||
Sbjct: 1079 caccgg---cggctgctgccccaggaacttgaggttgctctcgaacttggtctccggcag 1023

                                  
Query: 435  gtccgtgttgatccagttgtcc 456
            |||||||| |||||||||||||
Sbjct: 1022 gtccgtgtcgatccagttgtcc 1001



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>gb|AY112292.1| Zea mays CL379_2 mRNA sequence
          Length = 1061

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 312 caccgggttgtcggtctgcggcgtcagcgtgttctccacccggtaca 358
           |||||||||||||| |   ||||||| ||||||||||||||||||||
Sbjct: 990 caccgggttgtcgggcctgggcgtcaccgtgttctccacccggtaca 944



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>ref|NM_120030.3| Arabidopsis thaliana phospholipase C AT4G38690 mRNA, complete cds
          Length = 1291

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356
           ||||| |||| |||||||||||  |||||||||||||||||
Sbjct: 842 gggttatcgggctgcggcgtcactgtgttctccacccggta 802



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>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89
          Length = 199789

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 316    gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356
              ||||| |||| |||||||||||  |||||||||||||||||
Sbjct: 183866 gggttatcgggctgcggcgtcactgtgttctccacccggta 183906



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>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project)
          Length = 88164

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 316   gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356
             ||||| |||| |||||||||||  |||||||||||||||||
Sbjct: 21493 gggttatcgggctgcggcgtcactgtgttctccacccggta 21533



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>gb|AY091668.1| Arabidopsis thaliana AT4g38690/F20M13_250 mRNA, complete cds
          Length = 957

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356
           ||||| |||| |||||||||||  |||||||||||||||||
Sbjct: 776 gggttatcgggctgcggcgtcactgtgttctccacccggta 736



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>gb|AY070465.1| Arabidopsis thaliana AT4g38690/F20M13_250 mRNA, complete cds
          Length = 1209

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356
           ||||| |||| |||||||||||  |||||||||||||||||
Sbjct: 842 gggttatcgggctgcggcgtcactgtgttctccacccggta 802



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>emb|BX826641.1|CNS0A415 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB4ZB05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1390

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356
           ||||| |||| |||||||||||  |||||||||||||||||
Sbjct: 803 gggttatcgggctgcggcgtcactgtgttctccacccggta 763



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>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome
             IV, complete sequence
          Length = 94770

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 316   gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356
             ||||| |||| |||||||||||  |||||||||||||||||
Sbjct: 59411 gggttatcgggctgcggcgtcactgtgttctccacccggta 59371



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>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20M13 (ESSA project)
          Length = 91938

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 316   gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356
             ||||| |||| |||||||||||  |||||||||||||||||
Sbjct: 84807 gggttatcgggctgcggcgtcactgtgttctccacccggta 84847



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>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 1/7
          Length = 340806

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 319   ttgtcggtctgcggcgtcagcgtgttc 345
             |||||||| ||||||||||||||||||
Sbjct: 27042 ttgtcggtatgcggcgtcagcgtgttc 27016



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>emb|AJ391262.1|NME391262 Neisseria meningitidis DNA for region 9 (gene cluster encoding
            conserved hypothetical proteins, insertion element
            IS4351N2) and flanking genes uvrD, glnE (partial), strain
            Z2491
          Length = 10500

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 319  ttgtcggtctgcggcgtcagcgtgttc 345
            |||||||| ||||||||||||||||||
Sbjct: 6759 ttgtcggtatgcggcgtcagcgtgttc 6733



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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 319    ttgtcggtctgcggcgtcagcgtgttc 345
              |||||||| ||||||||||||||||||
Sbjct: 234837 ttgtcggtatgcggcgtcagcgtgttc 234863



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 214     agcacctgcagcttgccgccgaggcc 239
               |||||||||||| |||||||||||||
Sbjct: 6819858 agcacctgcagcgtgccgccgaggcc 6819833



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     gcagcaccgggttgtcggtc 327
               ||||||||||||||||||||
Sbjct: 4261877 gcagcaccgggttgtcggtc 4261858



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>ref|XM_472988.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1467

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 162 ggtgacgccggcgcaggcgtcgacgaagtcgcc 194
           |||||||||||||| |||| |||||||| ||||
Sbjct: 711 ggtgacgccggcgccggcgccgacgaagacgcc 679



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>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16,
             complete sequence
          Length = 146313

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 162   ggtgacgccggcgcaggcgtcgacgaagtcgcc 194
             |||||||||||||| |||| |||||||| ||||
Sbjct: 70261 ggtgacgccggcgccggcgccgacgaagacgcc 70229



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 162      ggtgacgccggcgcaggcgtcgacgaagtcgcc 194
                |||||||||||||| |||| |||||||| ||||
Sbjct: 24510630 ggtgacgccggcgccggcgccgacgaagacgcc 24510598



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 216     cacctgcagcttgccgccgaggccc 240
               |||||||||||||| ||||||||||
Sbjct: 1914248 cacctgcagcttgcggccgaggccc 1914272



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>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20,
              complete sequence
          Length = 116983

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 162    ggtgacgccggcgcaggcgtcgacgaagtcgcc 194
              |||||||||||||| |||| |||||||| ||||
Sbjct: 103952 ggtgacgccggcgccggcgccgacgaagacgcc 103920



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>gb|AE010411.1| Methanopyrus kandleri AV19 section 110 of 157 of the complete
           genome
          Length = 12333

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 365 tccgggcggccgccgggtcg 384
           ||||||||||||||||||||
Sbjct: 731 tccgggcggccgccgggtcg 712



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>ref|NM_192584.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1524

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204
           |||||||||||| ||||||| |||||||
Sbjct: 114 ggcgtcgacgaactcgccgttgatgaag 87



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>gb|DP000015.1| Xenopus tropicalis target 1 genomic scaffold
          Length = 292204

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    cttcttctccggcaggtccg 439
              ||||||||||||||||||||
Sbjct: 167734 cttcttctccggcaggtccg 167715



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>gb|AY023731.1| Oryza sativa microsatellite MRG6056 containing (AATT)X6, closest to
           marker R3072, genomic sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204
           |||||||||||| ||||||| |||||||
Sbjct: 172 ggcgtcgacgaactcgccgttgatgaag 199



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>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence
          Length = 198404

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atcttgctcccctgtggcta 33
              ||||||||||||||||||||
Sbjct: 195711 atcttgctcccctgtggcta 195692



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>gb|AC113988.8| Mus musculus chromosome 3, clone RP24-129H9, complete sequence
          Length = 181881

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     atcttgctcccctgtggcta 33
              ||||||||||||||||||||
Sbjct: 150627 atcttgctcccctgtggcta 150646



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>gb|AE007215.1| Sinorhizobium meliloti 1021 plasmid pSymA section 21 of 121 of the
            complete plasmid sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  gcgtgaccggctcgacgagc 309
            ||||||||||||||||||||
Sbjct: 5700 gcgtgaccggctcgacgagc 5719



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>gb|AF348412.2| Zea mays cytosolic aldehyde dehydrogenase RF2C (rf2c) gene, complete
            cds
          Length = 7257

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 177  ggcgtcgacgaagtcgccgtcgatgaag 204
            |||||||||||| | |||||||||||||
Sbjct: 1183 ggcgtcgacgaacttgccgtcgatgaag 1156



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 161     tggtgacgccggcgcaggcg 180
               ||||||||||||||||||||
Sbjct: 1903048 tggtgacgccggcgcaggcg 1903029



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>emb|AL357506.10| Human DNA sequence from clone RP11-327K21 on chromosome 6, complete
             sequence
          Length = 159294

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tgaaagcacaaatctacaag 71
             ||||||||||||||||||||
Sbjct: 14724 tgaaagcacaaatctacaag 14743



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>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gcggtgccgtcgacgcgggc 158
             ||||||||||||||||||||
Sbjct: 60437 gcggtgccgtcgacgcgggc 60418



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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    gggcggccgccgggtcgggc 387
              ||||||||||||||||||||
Sbjct: 168569 gggcggccgccgggtcgggc 168550



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>gb|AF191071.3| Homo sapiens chromosome 8 clone GS1-388D06 map 8unmapped, complete
             sequence
          Length = 88473

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tgaaagcacaaatctacaag 71
             ||||||||||||||||||||
Sbjct: 14199 tgaaagcacaaatctacaag 14218



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>emb|Z13972.1|NLCMCPBP N.lactamdurans cmcPBP gene
          Length = 1146

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 165 gacgccggcgcaggcgtcgacgaa 188
           |||| |||||||||||||||||||
Sbjct: 420 gacgtcggcgcaggcgtcgacgaa 397



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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     tggtgacgccggcgcaggcg 180
               ||||||||||||||||||||
Sbjct: 2525934 tggtgacgccggcgcaggcg 2525953



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>gb|AE011796.1| Xanthomonas axonopodis pv. citri str. 306,  section 174 of 469 of the
             complete genome
          Length = 11038

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   tggtgacgccggcgcaggcg 180
             ||||||||||||||||||||
Sbjct: 10738 tggtgacgccggcgcaggcg 10719



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>gb|AC090675.10| Homo sapiens 12 BAC RP11-681A17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 174044

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    ggtggagagcacctgcagct 226
              ||||||||||||||||||||
Sbjct: 148793 ggtggagagcacctgcagct 148774



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     ccttggtgacgccggcgcag 177
               ||||||||||||||||||||
Sbjct: 7721225 ccttggtgacgccggcgcag 7721206



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 177      ggcgtcgacgaagtcgccgtcgatgaag 204
                |||||||||||| ||||||| |||||||
Sbjct: 23110033 ggcgtcgacgaactcgccgttgatgaag 23110006



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>gb|AF348415.2| Zea mays cytosolic aldehyde dehydrogenase RF2D (rf2d) mRNA,
           complete cds
          Length = 1901

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204
           |||||||||||| ||||||| |||||||
Sbjct: 236 ggcgtcgacgaactcgccgttgatgaag 209



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     ggcgtcgacgaagtcgccgt 196
               ||||||||||||||||||||
Sbjct: 8624159 ggcgtcgacgaagtcgccgt 8624178



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     gccgtcgacgcgggccttgg 163
               ||||||||||||||||||||
Sbjct: 5945171 gccgtcgacgcgggccttgg 5945190



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>gb|AF348413.1| Zea mays cytosolic aldehyde dehydrogenase RF2C (rf2c) mRNA,
           complete cds
          Length = 1757

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204
           |||||||||||| | |||||||||||||
Sbjct: 159 ggcgtcgacgaacttgccgtcgatgaag 132



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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 240     cctggcgaaggcctgggcga 259
               ||||||||||||||||||||
Sbjct: 1099506 cctggcgaaggcctgggcga 1099525



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>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0545E05
          Length = 163229

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    gtccaacttcttctccggca 433
              ||||||||||||||||||||
Sbjct: 134393 gtccaacttcttctccggca 134412



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>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0710A02
          Length = 157201

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 177   ggcgtcgacgaagtcgccgtcgatgaag 204
             |||||||||||| ||||||| |||||||
Sbjct: 42192 ggcgtcgacgaactcgccgttgatgaag 42165



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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0091G06
          Length = 161851

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   ccttggtgacgccggcgcag 177
             ||||||||||||||||||||
Sbjct: 33723 ccttggtgacgccggcgcag 33704



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>dbj|AK105781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G04, full
           insert sequence
          Length = 1415

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 gtccaacttcttctccggca 433
           ||||||||||||||||||||
Sbjct: 852 gtccaacttcttctccggca 871



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>dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038G01, full
           insert sequence
          Length = 1961

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204
           |||||||||||| ||||||| |||||||
Sbjct: 277 ggcgtcgacgaactcgccgttgatgaag 250



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>dbj|AK100361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083M02, full
           insert sequence
          Length = 1652

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 gtccaacttcttctccggca 433
           ||||||||||||||||||||
Sbjct: 768 gtccaacttcttctccggca 787



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>dbj|AK066614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074N01, full
           insert sequence
          Length = 3250

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 gtccaacttcttctccggca 433
           ||||||||||||||||||||
Sbjct: 414 gtccaacttcttctccggca 433



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>gb|AC149515.2| Xenopus tropicalis clone CH216-35C7, complete sequence
          Length = 174535

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   cttcttctccggcaggtccg 439
             ||||||||||||||||||||
Sbjct: 20151 cttcttctccggcaggtccg 20170



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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     tggtgacgccggcgcaggcg 180
               ||||||||||||||||||||
Sbjct: 2547793 tggtgacgccggcgcaggcg 2547812



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    cctggcgaaggcctgggcga 259
              ||||||||||||||||||||
Sbjct: 772486 cctggcgaaggcctgggcga 772505


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,023,561
Number of Sequences: 3902068
Number of extensions: 3023561
Number of successful extensions: 59171
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58070
Number of HSP's gapped (non-prelim): 1098
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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