ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46c07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 297 bits (150), Expect = 2e-77 Identities = 293/340 (86%), Gaps = 3/340 (0%) Strand = Plus / Plus Query: 133 tctcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 192 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20760070 tctcacgcggcgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 20760129 Query: 193 ccgtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcc 252 |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || Sbjct: 20760130 ccgtcgatgaagtcggtggagaacacctgcagcttgtcgccgaggcccttggcgaagacc 20760189 Query: 253 tgggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagc 312 | ||||| ||| | ||| ||| ||| |||||| ||||||||||||||| |||| ||| Sbjct: 20760190 tcggcgatgaagaggcgggcgtagccgtggatccgccgcgtgaccggccggacgcagagc 20760249 Query: 313 accgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcg 372 ||||||||||||| ||||||||||| |||||||||||||||||| | | ||||||| || Sbjct: 20760250 accgggttgtcggcctgcggcgtcaccgtgttctccacccggtagaagaacctccggtcg 20760309 Query: 373 gccgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggc 432 ||| |||| ||||||| ||||| || || ||||| || ||||| |||||||| Sbjct: 20760310 gccaccgg---cggctgctcgccgaggaacttgacgttgctctcgaacttggtctccggc 20760366 Query: 433 aggtccgtgttgatccagttgtcccgcaggtagcccgcgc 472 ||||| |||| |||||||||||||| |||||||| |||| Sbjct: 20760367 aggtcggtgtcgatccagttgtccctgaggtagccggcgc 20760406
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 297 bits (150), Expect = 2e-77 Identities = 293/340 (86%), Gaps = 3/340 (0%) Strand = Plus / Plus Query: 133 tctcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 192 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35099 tctcacgcggcgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 35158 Query: 193 ccgtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcc 252 |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || Sbjct: 35159 ccgtcgatgaagtcggtggagaacacctgcagcttgtcgccgaggcccttggcgaagacc 35218 Query: 253 tgggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagc 312 | ||||| ||| | ||| ||| ||| |||||| ||||||||||||||| |||| ||| Sbjct: 35219 tcggcgatgaagaggcgggcgtagccgtggatccgccgcgtgaccggccggacgcagagc 35278 Query: 313 accgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcg 372 ||||||||||||| ||||||||||| |||||||||||||||||| | | ||||||| || Sbjct: 35279 accgggttgtcggcctgcggcgtcaccgtgttctccacccggtagaagaacctccggtcg 35338 Query: 373 gccgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggc 432 ||| |||| ||||||| ||||| || || ||||| || ||||| |||||||| Sbjct: 35339 gccaccgg---cggctgctcgccgaggaacttgacgttgctctcgaacttggtctccggc 35395 Query: 433 aggtccgtgttgatccagttgtcccgcaggtagcccgcgc 472 ||||| |||| |||||||||||||| |||||||| |||| Sbjct: 35396 aggtcggtgtcgatccagttgtccctgaggtagccggcgc 35435
>dbj|AK065856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D02, full insert sequence Length = 1213 Score = 297 bits (150), Expect = 2e-77 Identities = 293/340 (86%), Gaps = 3/340 (0%) Strand = Plus / Minus Query: 133 tctcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 192 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 tctcacgcggcgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 947 Query: 193 ccgtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcc 252 |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || Sbjct: 946 ccgtcgatgaagtcggtggagaacacctgcagcttgtcgccgaggcccttggcgaagacc 887 Query: 253 tgggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagc 312 | ||||| ||| | ||| ||| ||| |||||| ||||||||||||||| |||| ||| Sbjct: 886 tcggcgatgaagaggcgggcgtagccgtggatccgccgcgtgaccggccggacgcagagc 827 Query: 313 accgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcg 372 ||||||||||||| ||||||||||| |||||||||||||||||| | | ||||||| || Sbjct: 826 accgggttgtcggcctgcggcgtcaccgtgttctccacccggtagaagaacctccggtcg 767 Query: 373 gccgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggc 432 ||| |||| ||||||| ||||| || || ||||| || ||||| |||||||| Sbjct: 766 gccaccgg---cggctgctcgccgaggaacttgacgttgctctcgaacttggtctccggc 710 Query: 433 aggtccgtgttgatccagttgtcccgcaggtagcccgcgc 472 ||||| |||| |||||||||||||| |||||||| |||| Sbjct: 709 aggtcggtgtcgatccagttgtccctgaggtagccggcgc 670
>dbj|AK061726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B04, full insert sequence Length = 1477 Score = 297 bits (150), Expect = 2e-77 Identities = 293/340 (86%), Gaps = 3/340 (0%) Strand = Plus / Minus Query: 133 tctcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 192 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1236 tctcacgcggcgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcg 1177 Query: 193 ccgtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcc 252 |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || Sbjct: 1176 ccgtcgatgaagtcggtggagaacacctgcagcttgtcgccgaggcccttggcgaagacc 1117 Query: 253 tgggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagc 312 | ||||| ||| | ||| ||| ||| |||||| ||||||||||||||| |||| ||| Sbjct: 1116 tcggcgatgaagaggcgggcgtagccgtggatccgccgcgtgaccggccggacgcagagc 1057 Query: 313 accgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcg 372 ||||||||||||| ||||||||||| |||||||||||||||||| | | ||||||| || Sbjct: 1056 accgggttgtcggcctgcggcgtcaccgtgttctccacccggtagaagaacctccggtcg 997 Query: 373 gccgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggc 432 ||| |||| ||||||| ||||| || || ||||| || ||||| |||||||| Sbjct: 996 gccaccgg---cggctgctcgccgaggaacttgacgttgctctcgaacttggtctccggc 940 Query: 433 aggtccgtgttgatccagttgtcccgcaggtagcccgcgc 472 ||||| |||| |||||||||||||| |||||||| |||| Sbjct: 939 aggtcggtgtcgatccagttgtccctgaggtagccggcgc 900
>gb|AY105723.1| Zea mays PCO102084 mRNA sequence Length = 1551 Score = 262 bits (132), Expect = 9e-67 Identities = 275/322 (85%), Gaps = 3/322 (0%) Strand = Plus / Minus Query: 135 tcacgcggtgccgtcgacgcgggccttggtgacgccggcgcaggcgtcgacgaagtcgcc 194 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 1319 tcacgcggtgccatcgacgcgcgccttggtgactccggcgcaggcgtcgacgaagtcgcc 1260 Query: 195 gtcgatgaagtcggtggagagcacctgcagcttgccgccgaggcccctggcgaaggcctg 254 |||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| Sbjct: 1259 gtcgatgaagtcggtggagaagacctgcagcttgtcgccgaggcccttggcgaaggcctc 1200 Query: 255 ggcgacgaaaaagcgcgcgaagcggtggatgcgccgcgtgaccggctcgacgagcagcac 314 ||||| ||| | ||||||| ||| |||||| ||| |||||| ||| ||| |||||| Sbjct: 1199 ggcgatgaagaggcgcgcgtagccgtggatccgcttcgtgacgggccacacgcacagcac 1140 Query: 315 cgggttgtcggtctgcggcgtcagcgtgttctccacccggtacaggtgcctccgggcggc 374 ||||||||||| || ||||||| |||||||||||||||||| | | ||||||| |||| Sbjct: 1139 cgggttgtcggccttgggcgtcaccgtgttctccacccggtagaagaacctccggtcggc 1080 Query: 375 cgccgggtcgggctgctgcccgagcgacgcgaggttgccgtccaacttcttctccggcag 434 | |||| ||||||||||| || || |||||||| || ||||| |||||||||| Sbjct: 1079 caccgg---cggctgctgccccaggaacttgaggttgctctcgaacttggtctccggcag 1023 Query: 435 gtccgtgttgatccagttgtcc 456 |||||||| ||||||||||||| Sbjct: 1022 gtccgtgtcgatccagttgtcc 1001
>gb|AY112292.1| Zea mays CL379_2 mRNA sequence Length = 1061 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 312 caccgggttgtcggtctgcggcgtcagcgtgttctccacccggtaca 358 |||||||||||||| | ||||||| |||||||||||||||||||| Sbjct: 990 caccgggttgtcgggcctgggcgtcaccgtgttctccacccggtaca 944
>ref|NM_120030.3| Arabidopsis thaliana phospholipase C AT4G38690 mRNA, complete cds Length = 1291 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356 ||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 842 gggttatcgggctgcggcgtcactgtgttctccacccggta 802
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89 Length = 199789 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356 ||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 183866 gggttatcgggctgcggcgtcactgtgttctccacccggta 183906
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project) Length = 88164 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356 ||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 21493 gggttatcgggctgcggcgtcactgtgttctccacccggta 21533
>gb|AY091668.1| Arabidopsis thaliana AT4g38690/F20M13_250 mRNA, complete cds Length = 957 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356 ||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 776 gggttatcgggctgcggcgtcactgtgttctccacccggta 736
>gb|AY070465.1| Arabidopsis thaliana AT4g38690/F20M13_250 mRNA, complete cds Length = 1209 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356 ||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 842 gggttatcgggctgcggcgtcactgtgttctccacccggta 802
>emb|BX826641.1|CNS0A415 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB4ZB05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1390 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356 ||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 803 gggttatcgggctgcggcgtcactgtgttctccacccggta 763
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome IV, complete sequence Length = 94770 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356 ||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 59411 gggttatcgggctgcggcgtcactgtgttctccacccggta 59371
>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone F20M13 (ESSA project) Length = 91938 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 316 gggttgtcggtctgcggcgtcagcgtgttctccacccggta 356 ||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 84807 gggttatcgggctgcggcgtcactgtgttctccacccggta 84847
>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 1/7 Length = 340806 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 319 ttgtcggtctgcggcgtcagcgtgttc 345 |||||||| |||||||||||||||||| Sbjct: 27042 ttgtcggtatgcggcgtcagcgtgttc 27016
>emb|AJ391262.1|NME391262 Neisseria meningitidis DNA for region 9 (gene cluster encoding conserved hypothetical proteins, insertion element IS4351N2) and flanking genes uvrD, glnE (partial), strain Z2491 Length = 10500 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 319 ttgtcggtctgcggcgtcagcgtgttc 345 |||||||| |||||||||||||||||| Sbjct: 6759 ttgtcggtatgcggcgtcagcgtgttc 6733
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 319 ttgtcggtctgcggcgtcagcgtgttc 345 |||||||| |||||||||||||||||| Sbjct: 234837 ttgtcggtatgcggcgtcagcgtgttc 234863
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 214 agcacctgcagcttgccgccgaggcc 239 |||||||||||| ||||||||||||| Sbjct: 6819858 agcacctgcagcgtgccgccgaggcc 6819833 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gcagcaccgggttgtcggtc 327 |||||||||||||||||||| Sbjct: 4261877 gcagcaccgggttgtcggtc 4261858
>ref|XM_472988.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 162 ggtgacgccggcgcaggcgtcgacgaagtcgcc 194 |||||||||||||| |||| |||||||| |||| Sbjct: 711 ggtgacgccggcgccggcgccgacgaagacgcc 679
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 162 ggtgacgccggcgcaggcgtcgacgaagtcgcc 194 |||||||||||||| |||| |||||||| |||| Sbjct: 70261 ggtgacgccggcgccggcgccgacgaagacgcc 70229
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 162 ggtgacgccggcgcaggcgtcgacgaagtcgcc 194 |||||||||||||| |||| |||||||| |||| Sbjct: 24510630 ggtgacgccggcgccggcgccgacgaagacgcc 24510598
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 216 cacctgcagcttgccgccgaggccc 240 |||||||||||||| |||||||||| Sbjct: 1914248 cacctgcagcttgcggccgaggccc 1914272
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 162 ggtgacgccggcgcaggcgtcgacgaagtcgcc 194 |||||||||||||| |||| |||||||| |||| Sbjct: 103952 ggtgacgccggcgccggcgccgacgaagacgcc 103920
>gb|AE010411.1| Methanopyrus kandleri AV19 section 110 of 157 of the complete genome Length = 12333 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tccgggcggccgccgggtcg 384 |||||||||||||||||||| Sbjct: 731 tccgggcggccgccgggtcg 712
>ref|NM_192584.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204 |||||||||||| ||||||| ||||||| Sbjct: 114 ggcgtcgacgaactcgccgttgatgaag 87
>gb|DP000015.1| Xenopus tropicalis target 1 genomic scaffold Length = 292204 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcttctccggcaggtccg 439 |||||||||||||||||||| Sbjct: 167734 cttcttctccggcaggtccg 167715
>gb|AY023731.1| Oryza sativa microsatellite MRG6056 containing (AATT)X6, closest to marker R3072, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204 |||||||||||| ||||||| ||||||| Sbjct: 172 ggcgtcgacgaactcgccgttgatgaag 199
>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence Length = 198404 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atcttgctcccctgtggcta 33 |||||||||||||||||||| Sbjct: 195711 atcttgctcccctgtggcta 195692
>gb|AC113988.8| Mus musculus chromosome 3, clone RP24-129H9, complete sequence Length = 181881 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atcttgctcccctgtggcta 33 |||||||||||||||||||| Sbjct: 150627 atcttgctcccctgtggcta 150646
>gb|AE007215.1| Sinorhizobium meliloti 1021 plasmid pSymA section 21 of 121 of the complete plasmid sequence Length = 10029 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 gcgtgaccggctcgacgagc 309 |||||||||||||||||||| Sbjct: 5700 gcgtgaccggctcgacgagc 5719
>gb|AF348412.2| Zea mays cytosolic aldehyde dehydrogenase RF2C (rf2c) gene, complete cds Length = 7257 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204 |||||||||||| | ||||||||||||| Sbjct: 1183 ggcgtcgacgaacttgccgtcgatgaag 1156
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tggtgacgccggcgcaggcg 180 |||||||||||||||||||| Sbjct: 1903048 tggtgacgccggcgcaggcg 1903029
>emb|AL357506.10| Human DNA sequence from clone RP11-327K21 on chromosome 6, complete sequence Length = 159294 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgaaagcacaaatctacaag 71 |||||||||||||||||||| Sbjct: 14724 tgaaagcacaaatctacaag 14743
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gcggtgccgtcgacgcgggc 158 |||||||||||||||||||| Sbjct: 60437 gcggtgccgtcgacgcgggc 60418
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 gggcggccgccgggtcgggc 387 |||||||||||||||||||| Sbjct: 168569 gggcggccgccgggtcgggc 168550
>gb|AF191071.3| Homo sapiens chromosome 8 clone GS1-388D06 map 8unmapped, complete sequence Length = 88473 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgaaagcacaaatctacaag 71 |||||||||||||||||||| Sbjct: 14199 tgaaagcacaaatctacaag 14218
>emb|Z13972.1|NLCMCPBP N.lactamdurans cmcPBP gene Length = 1146 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 gacgccggcgcaggcgtcgacgaa 188 |||| ||||||||||||||||||| Sbjct: 420 gacgtcggcgcaggcgtcgacgaa 397
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tggtgacgccggcgcaggcg 180 |||||||||||||||||||| Sbjct: 2525934 tggtgacgccggcgcaggcg 2525953
>gb|AE011796.1| Xanthomonas axonopodis pv. citri str. 306, section 174 of 469 of the complete genome Length = 11038 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tggtgacgccggcgcaggcg 180 |||||||||||||||||||| Sbjct: 10738 tggtgacgccggcgcaggcg 10719
>gb|AC090675.10| Homo sapiens 12 BAC RP11-681A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174044 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ggtggagagcacctgcagct 226 |||||||||||||||||||| Sbjct: 148793 ggtggagagcacctgcagct 148774
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttggtgacgccggcgcag 177 |||||||||||||||||||| Sbjct: 7721225 ccttggtgacgccggcgcag 7721206
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204 |||||||||||| ||||||| ||||||| Sbjct: 23110033 ggcgtcgacgaactcgccgttgatgaag 23110006
>gb|AF348415.2| Zea mays cytosolic aldehyde dehydrogenase RF2D (rf2d) mRNA, complete cds Length = 1901 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204 |||||||||||| ||||||| ||||||| Sbjct: 236 ggcgtcgacgaactcgccgttgatgaag 209
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ggcgtcgacgaagtcgccgt 196 |||||||||||||||||||| Sbjct: 8624159 ggcgtcgacgaagtcgccgt 8624178 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gccgtcgacgcgggccttgg 163 |||||||||||||||||||| Sbjct: 5945171 gccgtcgacgcgggccttgg 5945190
>gb|AF348413.1| Zea mays cytosolic aldehyde dehydrogenase RF2C (rf2c) mRNA, complete cds Length = 1757 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204 |||||||||||| | ||||||||||||| Sbjct: 159 ggcgtcgacgaacttgccgtcgatgaag 132
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cctggcgaaggcctgggcga 259 |||||||||||||||||||| Sbjct: 1099506 cctggcgaaggcctgggcga 1099525
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0545E05 Length = 163229 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 gtccaacttcttctccggca 433 |||||||||||||||||||| Sbjct: 134393 gtccaacttcttctccggca 134412
>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710A02 Length = 157201 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204 |||||||||||| ||||||| ||||||| Sbjct: 42192 ggcgtcgacgaactcgccgttgatgaag 42165
>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06 Length = 161851 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttggtgacgccggcgcag 177 |||||||||||||||||||| Sbjct: 33723 ccttggtgacgccggcgcag 33704
>dbj|AK105781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G04, full insert sequence Length = 1415 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 gtccaacttcttctccggca 433 |||||||||||||||||||| Sbjct: 852 gtccaacttcttctccggca 871
>dbj|AK101427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038G01, full insert sequence Length = 1961 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 177 ggcgtcgacgaagtcgccgtcgatgaag 204 |||||||||||| ||||||| ||||||| Sbjct: 277 ggcgtcgacgaactcgccgttgatgaag 250
>dbj|AK100361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083M02, full insert sequence Length = 1652 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 gtccaacttcttctccggca 433 |||||||||||||||||||| Sbjct: 768 gtccaacttcttctccggca 787
>dbj|AK066614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074N01, full insert sequence Length = 3250 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 gtccaacttcttctccggca 433 |||||||||||||||||||| Sbjct: 414 gtccaacttcttctccggca 433
>gb|AC149515.2| Xenopus tropicalis clone CH216-35C7, complete sequence Length = 174535 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cttcttctccggcaggtccg 439 |||||||||||||||||||| Sbjct: 20151 cttcttctccggcaggtccg 20170
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tggtgacgccggcgcaggcg 180 |||||||||||||||||||| Sbjct: 2547793 tggtgacgccggcgcaggcg 2547812
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cctggcgaaggcctgggcga 259 |||||||||||||||||||| Sbjct: 772486 cctggcgaaggcctgggcga 772505 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,023,561 Number of Sequences: 3902068 Number of extensions: 3023561 Number of successful extensions: 59171 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58070 Number of HSP's gapped (non-prelim): 1098 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
