ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X84056.1|HVPAF93 H.vulgare paf93 gene 381 e-103
2gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, c... 157 2e-35
3gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein ... 121 9e-25
4gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (... 121 9e-25
5gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein ... 119 4e-24
6emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin... 111 9e-22
7gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence 111 9e-22
8emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chr... 48 0.011
9gb|AC125114.3| Mus musculus BAC clone RP24-254M13 from chromosom... 42 0.68
10gb|AC126026.4| Mus musculus BAC clone RP24-486A17 from chromosom... 42 0.68
11gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 40 2.7
12ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypo... 40 2.7
13gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, com... 40 2.7
14emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 40 2.7
15emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 40 2.7
16dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 2.7
17dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, ... 40 2.7
18gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 2.7
19dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 2.7
20dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 2.7 
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene
          Length = 1154

 Score =  381 bits (192), Expect = e-103
 Identities = 207/212 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgcccgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 tgcccgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaac 1040

                                                                        
Query: 61   tgaagcccgtatacccaaactgagcacaagcatccgtcacctaacgggcttcacagaccg 120
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 1039 tgaagcccgtatacccaaactgaacacaagcatccgtcacctaacggacttcacagaccg 980

                                                                        
Query: 121  gacctccaaagacgatcaatccctccatcttgacacggacttaaacttaaagcaaacacg 180
            ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 979  gaccttcaaagacgatcaatccctccatcttgacacggacttagacgtaaagcaaacacg 920

                                            
Query: 181  acacacgccaacaatttaatggaggtccggtg 212
            ||||||||||||||||||||||||||||||||
Sbjct: 919  acacacgccaacaatttaatggaggtccggtg 888
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>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds
          Length = 2254

 Score =  157 bits (79), Expect = 2e-35
 Identities = 79/79 (100%)
 Strand = Plus / Minus

                                                                        
Query: 134  gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacacgccaaca 2187

                               
Query: 194  atttaatggaggtccggtg 212
            |||||||||||||||||||
Sbjct: 2186 atttaatggaggtccggtg 2168
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>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA,
            complete cds
          Length = 1181

 Score =  121 bits (61), Expect = 9e-25
 Identities = 110/125 (88%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   aagcatccgtcacctaacgggcttcacagaccggacctccaaagacgatcaatccct-cc 146
            ||||| |||||||  |||||||||||| |||||||||| ||||||||||||| |||| ||
Sbjct: 1033 aagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaacccctccc 974

                                                                        
Query: 147  atcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatggaggt 206
            | ||||||||  ||||| || |||||||||||| |||||||||||||||| ||| |||||
Sbjct: 973  accttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatcgaggt 914

                 
Query: 207  ccggt 211
            |||||
Sbjct: 913  ccggt 909
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>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete
            cds
          Length = 1136

 Score =  121 bits (61), Expect = 9e-25
 Identities = 110/125 (88%), Gaps = 1/125 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   aagcatccgtcacctaacgggcttcacagaccggacctccaaagacgatcaatccct-cc 146
            ||||| |||||||  |||||||||||| |||||||||| ||||||||||||| |||| ||
Sbjct: 1024 aagcacccgtcactgaacgggcttcacggaccggaccttcaaagacgatcaacccctccc 965

                                                                        
Query: 147  atcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatggaggt 206
            | ||||||||  ||||| || |||||||||||| |||||||||||||||| ||| |||||
Sbjct: 964  accttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatcgaggt 905

                 
Query: 207  ccggt 211
            |||||
Sbjct: 904  ccggt 900



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 30   acaacatccaggacctgactctggaccaaactgaa 64
            ||||||||||||||||||||||| |||||||||||
Sbjct: 1063 acaacatccaggacctgactctgaaccaaactgaa 1029
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>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA,
            complete cds
          Length = 1242

 Score =  119 bits (60), Expect = 4e-24
 Identities = 113/128 (88%), Gaps = 2/128 (1%)
 Strand = Plus / Minus

                                                                        
Query: 85   cacaagcatccgtcacctaacgggcttcacagaccggacctccaaagacgatcaatccct 144
            ||||||||||||||||  |||||||||||| ||||| |||| ||||||||||||| ||||
Sbjct: 1026 cacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagacgatcaacccct 967

                                                                        
Query: 145  -ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatgga 203
             ||| ||||||||  |||| ||| |||||||||||| |||||||||||||||| ||| ||
Sbjct: 966  cccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaacaattcaatcga 908

                    
Query: 204  ggtccggt 211
            ||||||||
Sbjct: 907  ggtccggt 900



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 52/56 (92%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 9    ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 64
            |||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1082 ataataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1028
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>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene)
          Length = 1127

 Score =  111 bits (56), Expect = 9e-22
 Identities = 112/128 (87%), Gaps = 2/128 (1%)
 Strand = Plus / Minus

                                                                        
Query: 85   cacaagcatccgtcacctaacgggcttcacagaccggacctccaaagacgatcaatccct 144
            ||||||||||||||||  |||||||||||| ||||| |||| ||||||||||||| ||||
Sbjct: 1024 cacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagacgatcaacccct 965

                                                                        
Query: 145  -ccatcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatgga 203
             ||| ||||||||  |||| ||| |||||||||||| |||||||||||||||| ||| | 
Sbjct: 964  cccaccttgacaccaactt-aacgtaaagcaaacacaacacacgccaacaattcaatcgg 906

                    
Query: 204  ggtccggt 211
            ||||||||
Sbjct: 905  ggtccggt 898



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 52/56 (92%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                    
Query: 9    ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 64
            |||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1080 ataataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1026
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>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence
          Length = 1130

 Score =  111 bits (56), Expect = 9e-22
 Identities = 112/128 (87%), Gaps = 2/128 (1%)
 Strand = Plus / Minus

                                                                       
Query: 85  cacaagcatccgtcacctaacgggcttcacagaccggacctccaaagacgatcaatccct 144
           ||||| ||||||||||  ||||||||||||||||||||||| ||| ||||||||| ||||
Sbjct: 998 cacaaacatccgtcactgaacgggcttcacagaccggaccttcaa-gacgatcaacccct 940

                                                                       
Query: 145 cc-atcttgacacggacttaaacttaaagcaaacacgacacacgccaacaatttaatgga 203
           || | ||||||||  ||||| || |||||||||||| |||||||||||||||| ||| ||
Sbjct: 939 cccaccttgacaccaacttagacgtaaagcaaacacaacacacgccaacaattcaatcga 880

                   
Query: 204 ggtccggt 211
           | ||||||
Sbjct: 879 gctccggt 872



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 49/53 (92%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 12   ataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 64
            ||||| ||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1051 ataagtaaacaaacttaa-caacatccaggacctgactctgaaccaaactgaa 1000
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>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete
              sequence
          Length = 205838

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 44     ctgactctggaccaaactgaagcc 67
              ||||||||||||||||||||||||
Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
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>gb|AC125114.3| Mus musculus BAC clone RP24-254M13 from chromosome 18, complete sequence
          Length = 158836

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 78     aactgagcacaagcatccgtc 98
              |||||||||||||||||||||
Sbjct: 145423 aactgagcacaagcatccgtc 145403
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>gb|AC126026.4| Mus musculus BAC clone RP24-486A17 from chromosome 18, complete
             sequence
          Length = 138242

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 78    aactgagcacaagcatccgtc 98
             |||||||||||||||||||||
Sbjct: 81254 aactgagcacaagcatccgtc 81234
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>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     aataagcaaataaacttaaa 30
              ||||||||||||||||||||
Sbjct: 153660 aataagcaaataaacttaaa 153679
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>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0511) partial mRNA
          Length = 5448

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   aaataaacttaaacaacatc 37
            ||||||||||||||||||||
Sbjct: 4865 aaataaacttaaacaacatc 4884
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>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 6      gtaataataagcaaataaacttaaacaa 33
              |||||||||||||||| || ||||||||
Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841
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>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     taataataagcaaataaacttaaa 30
             |||||||||| |||||||||||||
Sbjct: 63646 taataataagtaaataaacttaaa 63623
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>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     taataataagcaaataaacttaaa 30
             |||||||||| |||||||||||||
Sbjct: 81135 taataataagtaaataaacttaaa 81112
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>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
            sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 38   caggacctgactctggaccaaactgaag 65
            |||||| ||||||||||||| |||||||
Sbjct: 3276 caggacttgactctggaccagactgaag 3249
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>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete
              sequences
          Length = 155513

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 38     caggacctgactctggaccaaactgaag 65
              |||||| ||||||||||||| |||||||
Sbjct: 131204 caggacttgactctggaccagactgaag 131177
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>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     aataagcaaataaacttaaa 30
              ||||||||||||||||||||
Sbjct: 121495 aataagcaaataaacttaaa 121476
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>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 38    caggacctgactctggaccaaactgaag 65
             |||||| ||||||||||||| |||||||
Sbjct: 80688 caggacttgactctggaccagactgaag 80661
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>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete
              sequence
          Length = 136804

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 38     caggacctgactctggaccaaactgaag 65
              |||||| ||||||||||||| |||||||
Sbjct: 102805 caggacttgactctggaccagactgaag 102778


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,691,015
Number of Sequences: 3902068
Number of extensions: 1691015
Number of successful extensions: 120625
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120574
Number of HSP's gapped (non-prelim): 45
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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