Clone Name | rbart46b10 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene) Length = 915 Score = 133 bits (67), Expect = 7e-29 Identities = 70/71 (98%) Strand = Plus / Minus Query: 1 gctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtc 60 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 891 gctgtagttggtctgcttgtcgaagtatcggtcccagagcatgatgccgccgtagttgtc 832 Query: 61 cttcttctgcg 71 ||||||||||| Sbjct: 831 cttcttctgcg 821
>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III, complete cds Length = 934 Score = 97.6 bits (49), Expect = 4e-18 Identities = 64/69 (92%) Strand = Plus / Minus Query: 2 ctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtcc 61 ||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 907 ctgtagtcgctctgcttgtcgaagtatcggtcccagagcatgaccccgccgtagttgtcc 848 Query: 62 ttcttctgc 70 ||||||||| Sbjct: 847 ttcttctgc 839
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 6e-11 Identities = 61/69 (88%) Strand = Plus / Plus Query: 3 tgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtcct 62 |||||||| || |||||||| |||| |||||||||| ||||| |||||||||||||||| Sbjct: 14484670 tgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagccgccgtagttgtccg 14484729 Query: 63 tcttctgcg 71 |||||||| Sbjct: 14484730 ccttctgcg 14484738
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 73.8 bits (37), Expect = 6e-11 Identities = 61/69 (88%) Strand = Plus / Plus Query: 3 tgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtcct 62 |||||||| || |||||||| |||| |||||||||| ||||| |||||||||||||||| Sbjct: 77844 tgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagccgccgtagttgtccg 77903 Query: 63 tcttctgcg 71 |||||||| Sbjct: 77904 ccttctgcg 77912
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 82293 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 82246 Score = 54.0 bits (27), Expect = 5e-05 Identities = 39/43 (90%) Strand = Plus / Plus Query: 16 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 88121 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 88163 Score = 42.1 bits (21), Expect = 0.20 Identities = 36/41 (87%) Strand = Plus / Plus Query: 18 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 83663 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 83703 Score = 38.2 bits (19), Expect = 3.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 3 tgtagttggtctgcttgtcgaagtacc 29 ||||||||| || |||||||||||||| Sbjct: 58508 tgtagttggccttcttgtcgaagtacc 58482
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 28123738 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28123691 Score = 54.0 bits (27), Expect = 5e-05 Identities = 39/43 (90%) Strand = Plus / Plus Query: 16 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 28129566 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28129608 Score = 42.1 bits (21), Expect = 0.20 Identities = 36/41 (87%) Strand = Plus / Plus Query: 18 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 28125108 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28125148 Score = 38.2 bits (19), Expect = 3.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 3 tgtagttggtctgcttgtcgaagtacc 29 ||||||||| || |||||||||||||| Sbjct: 28099241 tgtagttggccttcttgtcgaagtacc 28099215
>dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J19, full insert sequence Length = 1176 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 988 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 941
>dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E01, full insert sequence Length = 1234 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 989 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 942
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 28108616 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28108569 Score = 54.0 bits (27), Expect = 5e-05 Identities = 39/43 (90%) Strand = Plus / Plus Query: 16 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 28114444 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28114486 Score = 42.1 bits (21), Expect = 0.20 Identities = 36/41 (87%) Strand = Plus / Plus Query: 18 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 28109986 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28110026 Score = 38.2 bits (19), Expect = 3.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 3 tgtagttggtctgcttgtcgaagtacc 29 ||||||||| || |||||||||||||| Sbjct: 28084119 tgtagttggccttcttgtcgaagtacc 28084093
>dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1220 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 963 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 916
>dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C60571 Length = 1220 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 975 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 928
>dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C11701 Length = 1171 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 933 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 886
>dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C12269 Length = 1214 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 973 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 926
>dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C3540 Length = 1229 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 972 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 925
>dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds,clone:C10295 Length = 1199 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 954 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 907
>dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for class III chitinase homologue (OsChib3H-a)H-, complete cds, clone:C60129 Length = 1187 Score = 56.0 bits (28), Expect = 1e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 10 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 57 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 957 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 910
>dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101A20, full insert sequence Length = 1162 Score = 54.0 bits (27), Expect = 5e-05 Identities = 39/43 (90%) Strand = Plus / Minus Query: 16 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 927 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 885
>dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E14, full insert sequence Length = 1193 Score = 54.0 bits (27), Expect = 5e-05 Identities = 39/43 (90%) Strand = Plus / Minus Query: 16 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 931 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 889
>dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048M21, full insert sequence Length = 1153 Score = 54.0 bits (27), Expect = 5e-05 Identities = 39/43 (90%) Strand = Plus / Minus Query: 16 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 918 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 876
>ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 951 Score = 46.1 bits (23), Expect = 0.013 Identities = 41/47 (87%) Strand = Plus / Minus Query: 12 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||||||| ||| || ||||||| ||||| ||||||||||||| Sbjct: 916 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttg 870
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.013 Identities = 41/47 (87%) Strand = Plus / Minus Query: 12 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||||||| ||| || ||||||| ||||| ||||||||||||| Sbjct: 26162477 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttg 26162431
>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full insert sequence Length = 1165 Score = 46.1 bits (23), Expect = 0.013 Identities = 41/47 (87%) Strand = Plus / Minus Query: 12 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||||||| ||| || ||||||| ||||| ||||||||||||| Sbjct: 964 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttg 918
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 46.1 bits (23), Expect = 0.013 Identities = 41/47 (87%) Strand = Plus / Minus Query: 12 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||||||| ||| || ||||||| ||||| ||||||||||||| Sbjct: 54335 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttg 54289
>gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv. INRA 258, mercuric chloride-treated, leaves, mRNA Partial, 945 nt] Length = 945 Score = 44.1 bits (22), Expect = 0.050 Identities = 28/30 (93%) Strand = Plus / Minus Query: 29 cggtcccagagcatgatgccgccgtagttg 58 |||||||| | ||||||||||||||||||| Sbjct: 870 cggtcccacaccatgatgccgccgtagttg 841
>gb|AY107125.1| Zea mays PCO125117 mRNA sequence Length = 1252 Score = 44.1 bits (22), Expect = 0.050 Identities = 28/30 (93%) Strand = Plus / Minus Query: 29 cggtcccagagcatgatgccgccgtagttg 58 |||||||| | ||||||||||||||||||| Sbjct: 928 cggtcccacaccatgatgccgccgtagttg 899
>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full insert sequence Length = 1161 Score = 42.1 bits (21), Expect = 0.20 Identities = 36/41 (87%) Strand = Plus / Minus Query: 18 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 58 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 940 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 900
>ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus similar to putative endoplasmic reticulum protein, with at least 5 transmembrane domains, of eukaryotic origin (56.3 kD) (4P439) (LOC592817), mRNA Length = 1917 Score = 40.1 bits (20), Expect = 0.78 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gctgtagttggtctgcttgt 20 |||||||||||||||||||| Sbjct: 88 gctgtagttggtctgcttgt 107
>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence Length = 94287 Score = 40.1 bits (20), Expect = 0.78 Identities = 26/28 (92%) Strand = Plus / Minus Query: 37 gagcatgatgccgccgtagttgtccttc 64 ||||||||||| |||| ||||||||||| Sbjct: 66383 gagcatgatgcggccggagttgtccttc 66356
>emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in linkage group 6, complete sequence Length = 202848 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 ctgtagttggtctgcttgt 20 ||||||||||||||||||| Sbjct: 108099 ctgtagttggtctgcttgt 108081
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 tcgaagtaccggtcccaga 38 ||||||||||||||||||| Sbjct: 54269 tcgaagtaccggtcccaga 54251
>gb|AC093527.2| Homo sapiens chromosome 5 clone RP11-252A23, complete sequence Length = 191035 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 cgtagttgtccttcttctg 69 ||||||||||||||||||| Sbjct: 21489 cgtagttgtccttcttctg 21471
>emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 in linkage group 6, complete sequence Length = 173467 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 ctgtagttggtctgcttgt 20 ||||||||||||||||||| Sbjct: 37559 ctgtagttggtctgcttgt 37577
>gb|AC025761.5|AC025761 Homo sapiens chromosome 5 clone CTB-109C23, complete sequence Length = 112944 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 cgtagttgtccttcttctg 69 ||||||||||||||||||| Sbjct: 72344 cgtagttgtccttcttctg 72362
>emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6, complete sequence Length = 254657 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 ctgtagttggtctgcttgt 20 ||||||||||||||||||| Sbjct: 198186 ctgtagttggtctgcttgt 198204
>dbj|AK102731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105P15, full insert sequence Length = 1008 Score = 38.2 bits (19), Expect = 3.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 3 tgtagttggtctgcttgtcgaagtacc 29 ||||||||| || |||||||||||||| Sbjct: 843 tgtagttggccttcttgtcgaagtacc 817
>dbj|AK064356.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B03, full insert sequence Length = 1150 Score = 38.2 bits (19), Expect = 3.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 3 tgtagttggtctgcttgtcgaagtacc 29 ||||||||| || |||||||||||||| Sbjct: 890 tgtagttggccttcttgtcgaagtacc 864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 402,568 Number of Sequences: 3902068 Number of extensions: 402568 Number of successful extensions: 27576 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27496 Number of HSP's gapped (non-prelim): 80 length of query: 76 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 55 effective length of database: 17,151,101,840 effective search space: 943310601200 effective search space used: 943310601200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)