>gb|AY105809.1| Zea mays PCO090443 mRNA sequence
          Length = 1086

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                             
Query: 211 tccacgcactggagcaccagccggatgccctgcttcggcttgggcggctt 260
           ||||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct: 855 tccacgcactgcagcaccagcctgatgccctgcttcggcttgggaggctt 806

>ref|NM_192785.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1275

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 209  cctccacgcactggagcaccagccggatgccctgcttcggcttgggcggctt 260
            ||||||||||||| ||||||| || ||| |||||||||||||||||||||||
Sbjct: 1228 cctccacgcactgcagcaccaacctgattccctgcttcggcttgggcggctt 1177

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 209      cctccacgcactggagcaccagccggatgccctgcttcggcttgggcggctt 260
                ||||||||||||| ||||||| || ||| |||||||||||||||||||||||
Sbjct: 24393962 cctccacgcactgcagcaccaacctgattccctgcttcggcttgggcggctt 24394013

>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 209    cctccacgcactggagcaccagccggatgccctgcttcggcttgggcggctt 260
              ||||||||||||| ||||||| || ||| |||||||||||||||||||||||
Sbjct: 139866 cctccacgcactgcagcaccaacctgattccctgcttcggcttgggcggctt 139917

>dbj|AK069226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K19, full
            insert sequence
          Length = 1562

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 209  cctccacgcactggagcaccagccggatgccctgcttcggcttgggcggctt 260
            ||||||||||||| ||||||| || ||| |||||||||||||||||||||||
Sbjct: 1303 cctccacgcactgcagcaccaacctgattccctgcttcggcttgggcggctt 1252

>dbj|AK061211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D05, full
            insert sequence
          Length = 1556

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 209  cctccacgcactggagcaccagccggatgccctgcttcggcttgggcggctt 260
            ||||||||||||| ||||||| || ||| |||||||||||||||||||||||
Sbjct: 1269 cctccacgcactgcagcaccaacctgattccctgcttcggcttgggcggctt 1218

>gb|AC164568.1| Mus musculus BAC clone RP23-7A23 from chromosome 14, complete sequence
          Length = 227675

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 65    ggatgaagaatacatcagcaa 85
             |||||||||||||||||||||
Sbjct: 66273 ggatgaagaatacatcagcaa 66253

>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete
             sequence
          Length = 130977

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 171   cttgtgcagctcctgggtgaa 191
             |||||||||||||||||||||
Sbjct: 71803 cttgtgcagctcctgggtgaa 71823

>gb|AC004391.1|AC004391 Homo sapiens Cosmid g5129s018, complete sequence
          Length = 38649

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 70    aagaatacatcagcaacaacaacaa 94
             ||||||||| |||||||||||||||
Sbjct: 17515 aagaatacaacagcaacaacaacaa 17491

>ref|XM_641902.1| Dictyostelium discoideum hypothetical protein (DDB0190065), partial
           mRNA
          Length = 3060

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  tacatcagcaacaacaacaa 94
           ||||||||||||||||||||
Sbjct: 156 tacatcagcaacaacaacaa 175

>ref|XM_638283.1| Dictyostelium discoideum hypothetical protein (DDB0217746), partial
            mRNA
          Length = 5955

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   tacatcagcaacaacaacaa 94
            ||||||||||||||||||||
Sbjct: 4919 tacatcagcaacaacaacaa 4938

>ref|XM_637699.1| Dictyostelium discoideum hypothetical protein (DDB0217966), partial
            mRNA
          Length = 3207

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   tacatcagcaacaacaacaa 94
            ||||||||||||||||||||
Sbjct: 2169 tacatcagcaacaacaacaa 2188

>ref|XM_704993.1| Candida albicans SC5314 hypothetical protein (CaO19.2660), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  catcagcaacaacaacaagt 96
           ||||||||||||||||||||
Sbjct: 449 catcagcaacaacaacaagt 468

>gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4,
              complete sequence
          Length = 302156

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     tacatcagcaacaacaacaa 94
              ||||||||||||||||||||
Sbjct: 282989 tacatcagcaacaacaacaa 282970

>gb|AC005248.1| Homo sapiens BAC clone GS1-83B20 from 7, complete sequence
          Length = 68464

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   aataattctgtaataataag 131
             ||||||||||||||||||||
Sbjct: 54344 aataattctgtaataataag 54363

>gb|AC142315.1| Pan troglodytes BAC clone RP43-48P12 from 7, complete sequence
          Length = 178928

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   aataattctgtaataataag 131
             ||||||||||||||||||||
Sbjct: 13994 aataattctgtaataataag 14013

>emb|CR392366.4| Zebrafish DNA sequence from clone DKEY-51D17 in linkage group 9,
             complete sequence
          Length = 125898

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    tacatcagcaacaacaacaa 94
             ||||||||||||||||||||
Sbjct: 94799 tacatcagcaacaacaacaa 94818

>emb|CR936946.2| Medicago truncatula chromosome 5 clone mth2-77l22, COMPLETE SEQUENCE
          Length = 115705

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 67    atgaagaatacatcagcaacaacaacaa 94
             |||||||||||  |||||||||||||||
Sbjct: 26612 atgaagaatactacagcaacaacaacaa 26585

>gb|DQ121000.1| Hucho taimen clone ZB-20 microsatellite sequence
          Length = 275

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 77  catcagcaacaacaacaagtccaa 100
           |||||||||||||||||| |||||
Sbjct: 159 catcagcaacaacaacaactccaa 136

>gb|AF520815.1| Danio rerio connexin 48.5 (cx48.5) gene, complete cds
          Length = 1430

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   tacatcagcaacaacaacaa 94
            ||||||||||||||||||||
Sbjct: 1010 tacatcagcaacaacaacaa 1029

>gb|AF465751.1| Danio rerio connexin Cx48.5 mRNA, complete cds
          Length = 1305

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  tacatcagcaacaacaacaa 94
           ||||||||||||||||||||
Sbjct: 970 tacatcagcaacaacaacaa 989

>gb|AC010186.6| Homo sapiens 12p12-21.3-21.8 BAC RP11-705C15 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 74801

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   tgtgcagctcctgggtgaaa 192
             ||||||||||||||||||||
Sbjct: 64052 tgtgcagctcctgggtgaaa 64071

>ref|NM_207642.1| Danio rerio connexin 48.5 (cx48.5), mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  tacatcagcaacaacaacaa 94
           ||||||||||||||||||||
Sbjct: 970 tacatcagcaacaacaacaa 989

>gb|AY857115.2| HIV-1 isolate 7314403 from Australia, partial genome
          Length = 8882

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   cacaagaagggggatgaaga 73
            ||||||||||||||||||||
Sbjct: 8310 cacaagaagggggatgaaga 8329

>gb|AC107632.21| Mus musculus chromosome 9, clone RP23-6I5, complete sequence
          Length = 201942

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    gaataataatacaacccaca 53
             ||||||||||||||||||||
Sbjct: 93256 gaataataatacaacccaca 93237

>dbj|AB220949.1| Sphingomonas sp. KA1 plasmid pCAR3 carAaII, carBaII, carBbII, carCII,
            carAcII, carRII, tnpR, tnpA genes for terminal oxygenase
            component of carbazole 1,9a-dioxygenase, subunit of meta
            cleavage enzyme, subunit of meta cleavage enzyme, meta
            cleavage compound hydrolase, ferredoxin component of
            carbazole 1,9a-dioxygenase, transcriptional regulator of
            car operon, resolvase, transposase, complete cds
          Length = 6383

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 203  gcggctcctccacgcactggagca 226
            |||||||||||||||||| |||||
Sbjct: 3742 gcggctcctccacgcactcgagca 3719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,486,210
Number of Sequences: 3902068
Number of extensions: 3486210
Number of successful extensions: 96516
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96445
Number of HSP's gapped (non-prelim): 71
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)