Clone Name | rbart46b04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds Length = 1282 Score = 93.7 bits (47), Expect = 2e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 118 agtataggcgcgaacggacaccgactaaccagcacgcccgtgcattggcattcaagcacc 177 |||||| | |||||||||||||||| | |||||||||||||||||| ||||||||| || Sbjct: 1201 agtatacgtgcgaacggacaccgaccagccagcacgcccgtgcattcgcattcaaggacg 1142 Query: 178 cacacatcaggccatggcgaccttgtcgtgcgaacccgggcggcgga 224 || ||||||| || |||||||||| |||| || ||||| ||||||| Sbjct: 1141 catacatcagcccttggcgaccttatcgtcggagcccggtcggcgga 1095
>gb|AC168204.1| Medicago truncatula chromosome 7 BAC clone mth2-64h15, complete sequence Length = 45758 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 ttattatttttgctcaattaa 36 ||||||||||||||||||||| Sbjct: 12268 ttattatttttgctcaattaa 12288
>gb|AC136974.11| Medicago truncatula clone mth2-22e9, complete sequence Length = 124037 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 ttattatttttgctcaattaa 36 ||||||||||||||||||||| Sbjct: 11525 ttattatttttgctcaattaa 11505
>gb|AC105137.17| Homo sapiens chromosome 15, clone CTD-2562G15, complete sequence Length = 178059 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 tatttttgctcaattaacaac 40 ||||||||||||||||||||| Sbjct: 79311 tatttttgctcaattaacaac 79291
>gb|AY106338.1| Zea mays PCO074336 mRNA sequence Length = 849 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 gaaagggcatttcagcaaact 89 ||||||||||||||||||||| Sbjct: 56 gaaagggcatttcagcaaact 36
>ref|XM_670697.1| Plasmodium berghei strain ANKA hypothetical protein (PB103910.00.0) partial mRNA Length = 3190 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 attattatttttgctcaatt 34 |||||||||||||||||||| Sbjct: 1392 attattatttttgctcaatt 1373
>gb|AC182808.1| Gasterosteus aculeatus clone VMRC28-105K03, complete sequence Length = 124886 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ccatcggaaagggcatttca 82 |||||||||||||||||||| Sbjct: 120343 ccatcggaaagggcatttca 120324
>gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, complete sequence Length = 192734 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 catgccacattattattttt 26 |||||||||||||||||||| Sbjct: 105697 catgccacattattattttt 105716 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,223,113 Number of Sequences: 3902068 Number of extensions: 2223113 Number of successful extensions: 150322 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150305 Number of HSP's gapped (non-prelim): 17 length of query: 225 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 203 effective length of database: 17,147,199,772 effective search space: 3480881553716 effective search space used: 3480881553716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)