ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC007947.5|AC007947 Drosophila melanogaster, chromosome 3R, r... 42 0.35
2gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 10... 42 0.35
3gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome... 38 5.5
4gb|BC072305.1| Xenopus laevis similar to keratin 18, mRNA (cDNA ... 38 5.5
5gb|BC042269.1| Xenopus laevis similar to keratin 18, mRNA (cDNA ... 38 5.5
6gb|BC054993.1| Xenopus laevis keratin 18, mRNA (cDNA clone MGC:6... 38 5.5
7gb|AC122422.4| Mus musculus BAC clone RP24-169N11 from chromosom... 38 5.5
8emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chr... 38 5.5
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.5
10gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosom... 38 5.5
11emb|AL773561.7| Mouse DNA sequence from clone RP23-71D9 on chrom... 38 5.5
12emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 38 5.5
13gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, co... 38 5.5

>gb|AC007947.5|AC007947 Drosophila melanogaster, chromosome 3R, region 98F-98F, BAC clone
             BACR11O03, complete sequence
          Length = 168505

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    cagcccactgaacatggaaca 51
             |||||||||||||||||||||
Sbjct: 55238 cagcccactgaacatggaaca 55258



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>gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 105 of 118 of the complete
              sequence
          Length = 231562

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     cagcccactgaacatggaaca 51
              |||||||||||||||||||||
Sbjct: 217443 cagcccactgaacatggaaca 217463



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>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
              complete sequence
          Length = 138209

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 91     acagaggacacccgatacattcg 113
              |||||||||| ||||||||||||
Sbjct: 119331 acagaggacagccgatacattcg 119353



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>gb|BC072305.1| Xenopus laevis similar to keratin 18, mRNA (cDNA clone MGC:82575
          IMAGE:4970156), complete cds
          Length = 1396

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 80 tcccacctaccacagagga 98
          |||||||||||||||||||
Sbjct: 82 tcccacctaccacagagga 64



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>gb|BC042269.1| Xenopus laevis similar to keratin 18, mRNA (cDNA clone
          IMAGE:5572092), partial cds
          Length = 1393

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 80 tcccacctaccacagagga 98
          |||||||||||||||||||
Sbjct: 74 tcccacctaccacagagga 56



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>gb|BC054993.1| Xenopus laevis keratin 18, mRNA (cDNA clone MGC:64569
           IMAGE:6880371), complete cds
          Length = 1443

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 80  tcccacctaccacagagga 98
           |||||||||||||||||||
Sbjct: 108 tcccacctaccacagagga 90



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>gb|AC122422.4| Mus musculus BAC clone RP24-169N11 from chromosome 17, complete sequence
          Length = 181626

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     cctaccacagaggacaccc 103
              |||||||||||||||||||
Sbjct: 146070 cctaccacagaggacaccc 146052



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>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a
              phospholipase A2, group XIIA (Pla2g12) pseudogene, complete
              sequence
          Length = 200646

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 78     catcccacctaccacagag 96
              |||||||||||||||||||
Sbjct: 116324 catcccacctaccacagag 116342



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 91      acagaggacacccgatacattcg 113
               |||||||||| ||||||||||||
Sbjct: 7682936 acagaggacagccgatacattcg 7682958



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>gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosome 17, complete
             sequence
          Length = 206481

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    cctaccacagaggacaccc 103
             |||||||||||||||||||
Sbjct: 28599 cctaccacagaggacaccc 28581



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>emb|AL773561.7| Mouse DNA sequence from clone RP23-71D9 on chromosome X, complete
             sequence
          Length = 174072

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    acagcccactgaacatgga 48
             |||||||||||||||||||
Sbjct: 56815 acagcccactgaacatgga 56797



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia
              lipolytica
          Length = 4224103

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     acacccgatacattcgtac 116
              |||||||||||||||||||
Sbjct: 477227 acacccgatacattcgtac 477209



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>gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, complete sequence
          Length = 239743

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    aatcagggggacatcccac 85
             |||||||||||||||||||
Sbjct: 27706 aatcagggggacatcccac 27688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 649,076
Number of Sequences: 3902068
Number of extensions: 649076
Number of successful extensions: 38730
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38696
Number of HSP's gapped (non-prelim): 34
length of query: 119
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 98
effective length of database: 17,151,101,840
effective search space: 1680807980320
effective search space used: 1680807980320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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