ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart46a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476366.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 133 bits (67), Expect = 6e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 196 gtgagcacgccgatggcgcccatcttggccatggagacgcggaagtcccggaagaattgc 255 |||||||||||||||||||||||||| |||||||| ||| ||| ||||||| || Sbjct: 998 gtgagcacgccgatggcgcccatcttcaccatggagtgagcgaaatcctggaagaagtgg 939 Query: 256 ccgttgtacctgccagtggcggcgcggcggacgtaggcagcggtgaagggatgctccatg 315 |||| ||||||||| ||||||||| |||||| |||||| ||||||||| || |||||| Sbjct: 938 ccgtcgtacctgccggtggcggcgaggcggatgtaggcgctggtgaaggggtggtccatg 879 Query: 316 agcccggcgtccgacctgagcagcccgcgcctcctggccacctgccgatagtagctcgtg 375 || | ||||||||||| ||||||| | |||||||| |||||||||| ||||||| || Sbjct: 878 aggcaggcgtccgaccggagcagcgcccgcctcctcaccacctgccggaagtagctgctg 819 Query: 376 tcgaacgtctcgcagctaccggcgtccatctccgc 410 |||||| || | |||| |||| |||||||||||| Sbjct: 818 tcgaacctcgtgaagctcccggggtccatctccgc 784
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 133 bits (67), Expect = 6e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 196 gtgagcacgccgatggcgcccatcttggccatggagacgcggaagtcccggaagaattgc 255 |||||||||||||||||||||||||| |||||||| ||| ||| ||||||| || Sbjct: 252815 gtgagcacgccgatggcgcccatcttcaccatggagtgagcgaaatcctggaagaagtgg 252756 Query: 256 ccgttgtacctgccagtggcggcgcggcggacgtaggcagcggtgaagggatgctccatg 315 |||| ||||||||| ||||||||| |||||| |||||| ||||||||| || |||||| Sbjct: 252755 ccgtcgtacctgccggtggcggcgaggcggatgtaggcgctggtgaaggggtggtccatg 252696 Query: 316 agcccggcgtccgacctgagcagcccgcgcctcctggccacctgccgatagtagctcgtg 375 || | ||||||||||| ||||||| | |||||||| |||||||||| ||||||| || Sbjct: 252695 aggcaggcgtccgaccggagcagcgcccgcctcctcaccacctgccggaagtagctgctg 252636 Query: 376 tcgaacgtctcgcagctaccggcgtccatctccgc 410 |||||| || | |||| |||| |||||||||||| Sbjct: 252635 tcgaacctcgtgaagctcccggggtccatctccgc 252601
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 133 bits (67), Expect = 6e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 196 gtgagcacgccgatggcgcccatcttggccatggagacgcggaagtcccggaagaattgc 255 |||||||||||||||||||||||||| |||||||| ||| ||| ||||||| || Sbjct: 87679 gtgagcacgccgatggcgcccatcttcaccatggagtgagcgaaatcctggaagaagtgg 87620 Query: 256 ccgttgtacctgccagtggcggcgcggcggacgtaggcagcggtgaagggatgctccatg 315 |||| ||||||||| ||||||||| |||||| |||||| ||||||||| || |||||| Sbjct: 87619 ccgtcgtacctgccggtggcggcgaggcggatgtaggcgctggtgaaggggtggtccatg 87560 Query: 316 agcccggcgtccgacctgagcagcccgcgcctcctggccacctgccgatagtagctcgtg 375 || | ||||||||||| ||||||| | |||||||| |||||||||| ||||||| || Sbjct: 87559 aggcaggcgtccgaccggagcagcgcccgcctcctcaccacctgccggaagtagctgctg 87500 Query: 376 tcgaacgtctcgcagctaccggcgtccatctccgc 410 |||||| || | |||| |||| |||||||||||| Sbjct: 87499 tcgaacctcgtgaagctcccggggtccatctccgc 87465
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 133 bits (67), Expect = 6e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 196 gtgagcacgccgatggcgcccatcttggccatggagacgcggaagtcccggaagaattgc 255 |||||||||||||||||||||||||| |||||||| ||| ||| ||||||| || Sbjct: 4814 gtgagcacgccgatggcgcccatcttcaccatggagtgagcgaaatcctggaagaagtgg 4755 Query: 256 ccgttgtacctgccagtggcggcgcggcggacgtaggcagcggtgaagggatgctccatg 315 |||| ||||||||| ||||||||| |||||| |||||| ||||||||| || |||||| Sbjct: 4754 ccgtcgtacctgccggtggcggcgaggcggatgtaggcgctggtgaaggggtggtccatg 4695 Query: 316 agcccggcgtccgacctgagcagcccgcgcctcctggccacctgccgatagtagctcgtg 375 || | ||||||||||| ||||||| | |||||||| |||||||||| ||||||| || Sbjct: 4694 aggcaggcgtccgaccggagcagcgcccgcctcctcaccacctgccggaagtagctgctg 4635 Query: 376 tcgaacgtctcgcagctaccggcgtccatctccgc 410 |||||| || | |||| |||| |||||||||||| Sbjct: 4634 tcgaacctcgtgaagctcccggggtccatctccgc 4600
>tpe|BN000623.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx94 gene for class III peroxidase 94 precursor, exon 1 Length = 1050 Score = 133 bits (67), Expect = 6e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 196 gtgagcacgccgatggcgcccatcttggccatggagacgcggaagtcccggaagaattgc 255 |||||||||||||||||||||||||| |||||||| ||| ||| ||||||| || Sbjct: 998 gtgagcacgccgatggcgcccatcttcaccatggagtgagcgaaatcctggaagaagtgg 939 Query: 256 ccgttgtacctgccagtggcggcgcggcggacgtaggcagcggtgaagggatgctccatg 315 |||| ||||||||| ||||||||| |||||| |||||| ||||||||| || |||||| Sbjct: 938 ccgtcgtacctgccggtggcggcgaggcggatgtaggcgctggtgaaggggtggtccatg 879 Query: 316 agcccggcgtccgacctgagcagcccgcgcctcctggccacctgccgatagtagctcgtg 375 || | ||||||||||| ||||||| | |||||||| |||||||||| ||||||| || Sbjct: 878 aggcaggcgtccgaccggagcagcgcccgcctcctcaccacctgccggaagtagctgctg 819 Query: 376 tcgaacgtctcgcagctaccggcgtccatctccgc 410 |||||| || | |||| |||| |||||||||||| Sbjct: 818 tcgaacctcgtgaagctcccggggtccatctccgc 784
>ref|NM_187572.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 936 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 189 gttgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 897 gttgccggtgagcacgccgatggagcccatcttgaccatgg 857
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 189 gttgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 1152321 gttgccggtgagcacgccgatggagcccatcttgaccatgg 1152361 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||| |||||||||||||||| |||||| Sbjct: 1158349 tgccggtgagcacctggatggcgcccatcttgaccatgg 1158387
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 189 gttgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 56025 gttgccggtgagcacgccgatggagcccatcttgaccatgg 56065 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||| |||||||||||||||| |||||| Sbjct: 62053 tgccggtgagcacctggatggcgcccatcttgaccatgg 62091
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 189 gttgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 1152319 gttgccggtgagcacgccgatggagcccatcttgaccatgg 1152359 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||| |||||||||||||||| |||||| Sbjct: 1158347 tgccggtgagcacctggatggcgcccatcttgaccatgg 1158385
>dbj|AK103660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135H09, full insert sequence Length = 1506 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 189 gttgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 1119 gttgccggtgagcacgccgatggagcccatcttgaccatgg 1079
>dbj|AK073847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069F06, full insert sequence Length = 1491 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 189 gttgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 1119 gttgccggtgagcacgccgatggagcccatcttgaccatgg 1079
>dbj|AK060028.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F06, full insert sequence Length = 1147 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 189 gttgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 823 gttgccggtgagcacgccgatggagcccatcttgaccatgg 783
>tpe|BN000562.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx33 gene for class III peroxidase 33 precursor, exons 1-3 Length = 3361 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 189 gttgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 3322 gttgccggtgagcacgccgatggagcccatcttgaccatgg 3282
>ref|NM_197545.1| Oryza sativa (japonica cultivar-group) putative peroxidase (OSJNBa0040D23.2), mRNA Length = 1204 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 |||||||||||||||||| ||||||||||||| |||||| Sbjct: 1030 tgccggtgagcacgccgacggcgcccatcttgaccatgg 992
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 |||||||||||||||||| ||||||||||||| |||||| Sbjct: 98374 tgccggtgagcacgccgacggcgcccatcttgaccatgg 98336
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 |||||||||||||||||| ||||||||||||| |||||| Sbjct: 23020 tgccggtgagcacgccgacggcgcccatcttgaccatgg 22982
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 |||||||||||||||||| ||||||||||||| |||||| Sbjct: 20382872 tgccggtgagcacgccgacggcgcccatcttgaccatgg 20382834
>dbj|AK105708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E05, full insert sequence Length = 1422 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 |||||||||||||||||| ||||||||||||| |||||| Sbjct: 1139 tgccggtgagcacgccgacggcgcccatcttgaccatgg 1101
>tpe|BN000657.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx128 gene for class III peroxidase 128 precursor, exons 1-3 Length = 1794 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 |||||||||||||||||| ||||||||||||| |||||| Sbjct: 1756 tgccggtgagcacgccgacggcgcccatcttgaccatgg 1718
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 |||||||||||||||||| ||||||||||||| |||||| Sbjct: 20394144 tgccggtgagcacgccgacggcgcccatcttgaccatgg 20394106
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 189 gttgccggtgagcacgccgatggcgcccatcttg 222 ||||||||||||||||||||||| |||||||||| Sbjct: 22362246 gttgccggtgagcacgccgatggagcccatcttg 22362213 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 364 tagtagctcgtgtcgaacgtctcgcagctaccggcgtccatctccg 409 |||||||| ||||||||||||| | |||| |||| ||||||||||| Sbjct: 16679303 tagtagctggtgtcgaacgtcttgtagctgccggggtccatctccg 16679258 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Minus Query: 193 ccggtgagcacgccgatggcgcccatcttggccatggagacgcggaagtcccggaagaa 251 |||||||||||| ||| | ||||||||||| |||||| ||| |||||||| |||||| Sbjct: 16679474 ccggtgagcacggcgacgttgcccatcttggtcatggactcgccgaagtccctgaagaa 16679416 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 364 tagtagctcgtgtcgaacgtctcgcagctaccggcgtccatctc 407 |||||||| ||||||||||||| | |||| || | ||||||||| Sbjct: 11403305 tagtagctggtgtcgaacgtcttgtagctgcccgggtccatctc 11403262
>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0566A10 Length = 174367 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 189 gttgccggtgagcacgccgatggcgcccatcttg 222 ||||||||||||||||||||||| |||||||||| Sbjct: 140669 gttgccggtgagcacgccgatggagcccatcttg 140636
>gb|AY108615.1| Zea mays PCO132912 mRNA sequence Length = 1231 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 |||||||||||||||||| || |||||||||| |||||| Sbjct: 931 tgccggtgagcacgccgacggagcccatcttgaccatgg 893
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 162 gttgcacttggtcctgatcttcccttggttgccggtgagcacgccgatggcgcccatctt 221 ||||||||| ||||||||| || ||| ||||||||||||| ||| | |||||||||| Sbjct: 42126 gttgcacttcttcctgatctcgccctggctgccggtgagcacttcgacgccgcccatctt 42067 Query: 222 ggccatggag 231 | |||||||| Sbjct: 42066 gaccatggag 42057
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 162 gttgcacttggtcctgatcttcccttggttgccggtgagcacgccgatggcgcccatctt 221 ||||||||| ||||||||| || ||| ||||||||||||| ||| | |||||||||| Sbjct: 24439453 gttgcacttcttcctgatctcgccctggctgccggtgagcacttcgacgccgcccatctt 24439394 Query: 222 ggccatggag 231 | |||||||| Sbjct: 24439393 gaccatggag 24439384 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gttgcacttggtcctgatct 181 |||||||||||||||||||| Sbjct: 1986283 gttgcacttggtcctgatct 1986264
>dbj|D14997.1|RICPEROX Oryza sativa (japonica cultivar-group) mRNA for peroxidase, complete cds Length = 1325 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 162 gttgcacttggtcctgatcttcccttggttgccggtgagcacgccgatggcgcccatctt 221 ||||||||| ||||||||| || ||| ||||||||||||| ||| | |||||||||| Sbjct: 1034 gttgcacttcttcctgatctcgccctggctgccggtgagcacttcgacgccgcccatctt 975 Query: 222 ggccatggag 231 | |||||||| Sbjct: 974 gaccatggag 965
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 364 tagtagctcgtgtcgaacgtctcgcagctaccggcgtccatctccg 409 |||||||| ||||||||||||| | |||| |||| ||||||||||| Sbjct: 30790 tagtagctggtgtcgaacgtcttgtagctgccggggtccatctccg 30745 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Minus Query: 193 ccggtgagcacgccgatggcgcccatcttggccatggagacgcggaagtcccggaagaa 251 |||||||||||| ||| | ||||||||||| |||||| ||| |||||||| |||||| Sbjct: 30961 ccggtgagcacggcgacgttgcccatcttggtcatggactcgccgaagtccctgaagaa 30903
>dbj|AK104950.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A02, full insert sequence Length = 1347 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 162 gttgcacttggtcctgatcttcccttggttgccggtgagcacgccgatggcgcccatctt 221 ||||||||| ||||||||| || ||| ||||||||||||| ||| | |||||||||| Sbjct: 1063 gttgcacttcttcctgatctcgccctggctgccggtgagcacttcgacgccgcccatctt 1004 Query: 222 ggccatggag 231 | |||||||| Sbjct: 1003 gaccatggag 994
>dbj|AK066855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082J20, full insert sequence Length = 1348 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 162 gttgcacttggtcctgatcttcccttggttgccggtgagcacgccgatggcgcccatctt 221 ||||||||| ||||||||| || ||| ||||||||||||| ||| | |||||||||| Sbjct: 1064 gttgcacttcttcctgatctcgccctggctgccggtgagcacttcgacgccgcccatctt 1005 Query: 222 ggccatggag 231 | |||||||| Sbjct: 1004 gaccatggag 995
>tpe|BN000609.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx80 gene for class III peroxidase 80 precursor, exons 1-2 Length = 1149 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 364 tagtagctcgtgtcgaacgtctcgcagctaccggcgtccatctccg 409 |||||||| ||||||||||||| | |||| |||| ||||||||||| Sbjct: 935 tagtagctggtgtcgaacgtcttgtagctgccggggtccatctccg 890 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Minus Query: 193 ccggtgagcacgccgatggcgcccatcttggccatggagacgcggaagtcccggaagaa 251 |||||||||||| ||| | ||||||||||| |||||| ||| |||||||| |||||| Sbjct: 1106 ccggtgagcacggcgacgttgcccatcttggtcatggactcgccgaagtccctgaagaa 1048
>tpe|BN000603.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx74 gene for class III peroxidase 74 precursor, exons 1-4 Length = 1311 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 162 gttgcacttggtcctgatcttcccttggttgccggtgagcacgccgatggcgcccatctt 221 ||||||||| ||||||||| || ||| ||||||||||||| ||| | |||||||||| Sbjct: 1299 gttgcacttcttcctgatctcgccctggctgccggtgagcacttcgacgccgcccatctt 1240 Query: 222 ggccatggag 231 | |||||||| Sbjct: 1239 gaccatggag 1230
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Minus Query: 192 gccggtgagcacgccgatggcgcccatcttggccat 227 ||||||||||||||||| | ||||||||||| |||| Sbjct: 17957 gccggtgagcacgccgacgccgcccatcttgaccat 17922
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Minus Query: 192 gccggtgagcacgccgatggcgcccatcttggccat 227 ||||||||||||||||| | ||||||||||| |||| Sbjct: 25705614 gccggtgagcacgccgacgccgcccatcttgaccat 25705579
>dbj|AK108713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B05, full insert sequence Length = 1346 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Minus Query: 192 gccggtgagcacgccgatggcgcccatcttggccat 227 ||||||||||||||||| | ||||||||||| |||| Sbjct: 1061 gccggtgagcacgccgacgccgcccatcttgaccat 1026
>tpe|BN000663.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx134 gene for class III peroxidase 134 precursor, exons 1-2 Length = 1524 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Minus Query: 192 gccggtgagcacgccgatggcgcccatcttggccat 227 ||||||||||||||||| | ||||||||||| |||| Sbjct: 1482 gccggtgagcacgccgacgccgcccatcttgaccat 1447
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Minus Query: 192 gccggtgagcacgccgatggcgcccatcttggccat 227 ||||||||||||||||| | ||||||||||| |||| Sbjct: 26024284 gccggtgagcacgccgacgccgcccatcttgaccat 26024249
>ref|NM_187573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 969 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||| |||||||||||||||| |||||| Sbjct: 928 tgccggtgagcacctggatggcgcccatcttgaccatgg 890
>emb|Y10213.1|ACGLNABGE A.caulinodans glnB & glnA genes Length = 2094 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 209 tggcgcccatcttggccatggag 231 ||||||||||||||||||||||| Sbjct: 1296 tggcgcccatcttggccatggag 1274
>dbj|AK120047.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H03, full insert sequence Length = 520 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||| |||||||||||||||| |||||| Sbjct: 338 tgccggtgagcacctggatggcgcccatcttgaccatgg 300
>dbj|AK064633.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H03, full insert sequence Length = 1164 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||| |||||||||||||||| |||||| Sbjct: 982 tgccggtgagcacctggatggcgcccatcttgaccatgg 944
>tpe|BN000563.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx34 gene for class III peroxidase 34 precursor, exons 1-4 Length = 1461 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 191 tgccggtgagcacgccgatggcgcccatcttggccatgg 229 ||||||||||||| |||||||||||||||| |||||| Sbjct: 1420 tgccggtgagcacctggatggcgcccatcttgaccatgg 1382
>ref|NM_188048.1| Oryza sativa (japonica cultivar-group), Ozsa8468 predicted mRNA Length = 975 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 tcctgatcttcccttggttgccggtgagcacgccgatg 210 ||||||| ||||||| | |||||||||||||| ||||| Sbjct: 952 tcctgatattccctttgctgccggtgagcacgtcgatg 915
>emb|AL136167.8| Human DNA sequence from clone RP1-299I16 on chromosome Xq26.1-27.3 Contains part of the GPR112 gene for G protein-coupled receptor 112, complete sequence Length = 63946 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacat 85 |||||||||||||||||||||| Sbjct: 40916 ggttaaataaattgtggcacat 40895
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 tcctgatcttcccttggttgccggtgagcacgccgatg 210 ||||||| ||||||| | |||||||||||||| ||||| Sbjct: 9340931 tcctgatattccctttgctgccggtgagcacgtcgatg 9340894
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 tcctgatcttcccttggttgccggtgagcacgccgatg 210 ||||||| ||||||| | |||||||||||||| ||||| Sbjct: 11258 tcctgatattccctttgctgccggtgagcacgtcgatg 11221
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 tcctgatcttcccttggttgccggtgagcacgccgatg 210 ||||||| ||||||| | |||||||||||||| ||||| Sbjct: 117525 tcctgatattccctttgctgccggtgagcacgtcgatg 117488
>dbj|AK103467.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129P08, full insert sequence Length = 1384 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 tcctgatcttcccttggttgccggtgagcacgccgatg 210 ||||||| ||||||| | |||||||||||||| ||||| Sbjct: 1103 tcctgatattccctttgctgccggtgagcacgtcgatg 1066
>dbj|AK101508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A16, full insert sequence Length = 1601 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 tcctgatcttcccttggttgccggtgagcacgccgatg 210 ||||||| ||||||| | |||||||||||||| ||||| Sbjct: 1331 tcctgatattccctttgctgccggtgagcacgtcgatg 1294
>dbj|AK060365.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H12, full insert sequence Length = 1391 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 tcctgatcttcccttggttgccggtgagcacgccgatg 210 ||||||| ||||||| | |||||||||||||| ||||| Sbjct: 1105 tcctgatattccctttgctgccggtgagcacgtcgatg 1068
>gb|AY106450.1| Zea mays PCO105015 mRNA sequence Length = 1470 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 206 cgatggcgcccatcttggccatggag 231 ||||||||||||||||| |||||||| Sbjct: 1035 cgatggcgcccatcttgaccatggag 1010
>tpe|BN000533.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx4 gene for class III peroxidase 4 precursor, exons 1-2 Length = 1786 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Minus Query: 173 tcctgatcttcccttggttgccggtgagcacgccgatg 210 ||||||| ||||||| | |||||||||||||| ||||| Sbjct: 1763 tcctgatattccctttgctgccggtgagcacgtcgatg 1726
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 gaatgccggattaatgctgag 137 ||||||||||||||||||||| Sbjct: 1785035 gaatgccggattaatgctgag 1785015
>gb|AC104631.2| Drosophila melanogaster clone BACR35D19, complete sequence Length = 166908 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 gtccatctccgctgccgcgct 419 ||||||||||||||||||||| Sbjct: 87975 gtccatctccgctgccgcgct 87995
>ref|XM_670783.1| Plasmodium berghei strain ANKA hypothetical protein (PB001219.02.0) partial mRNA Length = 1437 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 taaaatagaagggttaaataa 73 ||||||||||||||||||||| Sbjct: 210 taaaatagaagggttaaataa 230
>gb|AC183606.2| Pan troglodytes BAC clone CH251-286M5 from chromosome 12, complete sequence Length = 171738 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 64 ggttaaataaattgtggcacatcct 88 ||||||||||||| ||||||||||| Sbjct: 36674 ggttaaataaattatggcacatcct 36698
>emb|AL357498.16| Human DNA sequence from clone RP11-342H9 on chromosome 6, complete sequence Length = 101064 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcct 88 ||||||||||||||||| ||||||| Sbjct: 3675 ggttaaataaattgtggtacatcct 3651
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 412 gccgcgctgctgtcgccggggccgc 436 |||||||||||||||||| |||||| Sbjct: 222273 gccgcgctgctgtcgccgcggccgc 222249
>gb|AC091722.3| Sus scrofa clone RP44-304F21, complete sequence Length = 165604 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 aatagaagggttaaataaattgtgg 80 ||||||| ||||||||||||||||| Sbjct: 28101 aatagaatggttaaataaattgtgg 28077
>gb|AC024940.39| Homo sapiens 12 BAC RP11-627K11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205952 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 taaaatagaagggttaaataa 73 ||||||||||||||||||||| Sbjct: 58650 taaaatagaagggttaaataa 58630
>gb|AC027667.20| Homo sapiens 12 BAC RP11-972L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157801 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 64 ggttaaataaattgtggcacatcct 88 ||||||||||||| ||||||||||| Sbjct: 41713 ggttaaataaattatggcacatcct 41737
>gb|AC011939.9| Homo sapiens chromosome 15, clone RP11-16E23, complete sequence Length = 162964 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 taaataaattgtggcacatcc 87 ||||||||||||||||||||| Sbjct: 51906 taaataaattgtggcacatcc 51886
>ref|NM_134588.1| Drosophila melanogaster CG1503-RA (CG1503), mRNA Length = 1235 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 gtccatctccgctgccgcgct 419 ||||||||||||||||||||| Sbjct: 450 gtccatctccgctgccgcgct 430
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 gccggtgagcacgccgatggc 212 ||||||||||||||||||||| Sbjct: 1916246 gccggtgagcacgccgatggc 1916266
>gb|AC155245.3| Mus musculus BAC clone RP24-314P16 from chromosome 12, complete sequence Length = 169249 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 taaataaattgtggcacatcc 87 ||||||||||||||||||||| Sbjct: 84128 taaataaattgtggcacatcc 84108
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 taaataatactctaaaataga 61 ||||||||||||||||||||| Sbjct: 16713739 taaataatactctaaaataga 16713719
>gb|BT004894.1| Drosophila melanogaster LD44327 full insert cDNA Length = 1214 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 gtccatctccgctgccgcgct 419 ||||||||||||||||||||| Sbjct: 411 gtccatctccgctgccgcgct 391
>gb|AC084357.23| Homo sapiens 12q BAC RP11-415I12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188527 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcct 88 ||||||||||||| ||||||||||| Sbjct: 107529 ggttaaataaattatggcacatcct 107505
>gb|AC012156.14|AC012156 Homo sapiens 12p11-37.2-54.4 BAC RP11-433D24 (Rosewell Park Cancer Institute Human Bac Library) complete sequence Length = 162200 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 taaaatagaagggttaaataa 73 ||||||||||||||||||||| Sbjct: 130689 taaaatagaagggttaaataa 130709
>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16 Length = 162527 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 taaataatactctaaaataga 61 ||||||||||||||||||||| Sbjct: 90794 taaataatactctaaaataga 90774
>dbj|AK101122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025J07, full insert sequence Length = 2451 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ttaacatgaatatctatagcg 28 ||||||||||||||||||||| Sbjct: 716 ttaacatgaatatctatagcg 696
>gb|AE003569.4| Drosophila melanogaster chromosome X, section 70 of 74 of the complete sequence Length = 283558 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 gtccatctccgctgccgcgct 419 ||||||||||||||||||||| Sbjct: 184207 gtccatctccgctgccgcgct 184227
>emb|CR538726.12| Zebrafish DNA sequence from clone CH211-197C20 in linkage group 15, complete sequence Length = 190731 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 taaataatactctaaaataga 61 ||||||||||||||||||||| Sbjct: 60655 taaataatactctaaaataga 60675
>gb|AC154481.3| Mus musculus BAC clone RP23-197A2 from chromosome 12, complete sequence Length = 197101 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 taaataaattgtggcacatcc 87 ||||||||||||||||||||| Sbjct: 56155 taaataaattgtggcacatcc 56135
>ref|NM_001163.2| Homo sapiens amyloid beta (A4) precursor protein-binding, family A, member 1 (X11) (APBA1), mRNA Length = 3778 Score = 40.1 bits (20), Expect = 6.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 331 ctgagcagcccgcgcct-cctggccacctgcc 361 ||||||||||| ||||| |||||||||||||| Sbjct: 3663 ctgagcagcccccgcctgcctggccacctgcc 3632
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gttgcacttggtcctgatct 181 |||||||||||||||||||| Sbjct: 79160 gttgcacttggtcctgatct 79141
>gb|AC069538.10| Homo sapiens chromosome 10 clone RP11-205C5, complete sequence Length = 169772 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||||| |||||||||| Sbjct: 42579 ggttaaataaattttggcacatcc 42556
>gb|AC120418.10| Mus musculus chromosome 6, clone RP24-474I24, complete sequence Length = 177307 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 cttggtcctgatcttcccttggtt 191 |||||| ||||||||||||||||| Sbjct: 84759 cttggttctgatcttcccttggtt 84736
>gb|AC108117.2| Homo sapiens chromosome 5 clone RP11-348K15, complete sequence Length = 159501 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcac 83 |||||||||||||||||||| Sbjct: 12957 ggttaaataaattgtggcac 12938
>gb|AF030876.2| Homo sapiens chromosome X clone Qc-8D3, RP4-671D9, I104-219D, L110-C1837 map q28, complete sequence Length = 112752 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||||||||| |||||| Sbjct: 76955 ggttaaataaattgtggtacatcc 76978
>gb|AC110422.3| Mus musculus BAC clone RP24-198G12 from 2, complete sequence Length = 111357 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aaataatactctaaaataga 61 |||||||||||||||||||| Sbjct: 102676 aaataatactctaaaataga 102695
>ref|XM_729810.1| Plasmodium chabaudi chabaudi hypothetical protein (PC402860.00.0) partial mRNA Length = 123 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 taaaatagaagggttaaataaatt 76 |||||||||||||| ||||||||| Sbjct: 51 taaaatagaagggtaaaataaatt 28
>emb|AL589943.26| Human DNA sequence from clone RP11-44D23 on chromosome 10, complete sequence Length = 139325 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||||||||| |||||| Sbjct: 100539 ggttaaataaattgtggtacatcc 100562
>emb|AL355140.25| Human DNA sequence from clone RP11-548B3 on chromosome 9 Contains the gene for Friedreich ataxia region gene X123, the 3' end of the APBA1 gene for myloid beta (A4) precursor protein-binding, family A, member 1 (X11), a novel gene and two CpG islands, complete sequence Length = 185096 Score = 40.1 bits (20), Expect = 6.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 331 ctgagcagcccgcgcct-cctggccacctgcc 361 ||||||||||| ||||| |||||||||||||| Sbjct: 138400 ctgagcagcccccgcctgcctggccacctgcc 138431
>emb|AL121758.24|HSDJ850E9 Human DNA sequence from clone RP5-850E9 on chromosome 20 Contains part of the gene for a novel C2H2 type zinc finger protein similar to Drosophila Scratch (Scrt), Slug and Xenopus Snail, the C20orf139 gene for a novel protein similar to Drosophila CG6762 and five CpG islands, complete sequence Length = 114791 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||||||| |||||||| Sbjct: 10453 ggttaaataaattgtagcacatcc 10476
>gb|AC073176.8| Homo sapiens chromosome 10 clone RP11-432J9, complete sequence Length = 175610 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||||| |||||||||| Sbjct: 43418 ggttaaataaattttggcacatcc 43441
>gb|AC124080.15| Mus musculus chromosome 3, clone RP24-380G11, complete sequence Length = 198564 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ataaataatactctaaaata 59 |||||||||||||||||||| Sbjct: 70393 ataaataatactctaaaata 70412
>gb|AC122700.2| Homo sapiens chromosome 5 clone CTD-3136I2, complete sequence Length = 118238 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ggttaaataaattgtggcac 83 |||||||||||||||||||| Sbjct: 47827 ggttaaataaattgtggcac 47846
>gb|AC123022.4| Homo sapiens 3 BAC RP11-36C14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152395 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gaagggttaaataaattgtg 79 |||||||||||||||||||| Sbjct: 100349 gaagggttaaataaattgtg 100330
>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence Length = 169106 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 taaataatactctaaaatag 60 |||||||||||||||||||| Sbjct: 9346 taaataatactctaaaatag 9365
>gb|AC091013.7| Homo sapiens chromosome 11, clone RP11-379P15, complete sequence Length = 223741 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 agaagggttaaataaattgtggca 82 ||||||| |||||||||||||||| Sbjct: 25466 agaagggataaataaattgtggca 25489
>gb|AC087269.5| Homo sapiens chromosome 8, clone RP11-211C9, complete sequence Length = 187924 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||||||||| |||||| Sbjct: 163735 ggttaaataaattgtggtacatcc 163712
>gb|AC105221.3| Homo sapiens chromosome 18, clone RP11-480N3, complete sequence Length = 165396 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||| |||||||||||||||| Sbjct: 23959 ggttaaacaaattgtggcacatcc 23936
>gb|AY197458.1| Uncultured sulfate-reducing bacterium clone B04P037 dissimilatory sulfite reductase alpha subunit (dsrA) and dissimilatory sulfite reductase beta subunit (dsrB) genes, partial cds Length = 1797 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cagcccgcgcctcctggcca 355 |||||||||||||||||||| Sbjct: 1238 cagcccgcgcctcctggcca 1257
>gb|AY197455.1| Uncultured sulfate-reducing bacterium clone B04P026 dissimilatory sulfite reductase alpha subunit (dsrA) and dissimilatory sulfite reductase beta subunit (dsrB) genes, partial cds Length = 1804 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cagcccgcgcctcctggcca 355 |||||||||||||||||||| Sbjct: 1238 cagcccgcgcctcctggcca 1257
>gb|AC108740.6| Homo sapiens 3 BAC RP11-481N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 133915 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gaagggttaaataaattgtg 79 |||||||||||||||||||| Sbjct: 85060 gaagggttaaataaattgtg 85079
>gb|AC090338.6| Homo sapiens chromosome 18, clone RP11-704C2, complete sequence Length = 200525 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aatagaagggttaaataaat 75 |||||||||||||||||||| Sbjct: 5871 aatagaagggttaaataaat 5890
>gb|AC098859.2| Homo sapiens BAC clone RP11-173E2 from 4, complete sequence Length = 183680 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||| |||||||||||| Sbjct: 108343 ggttaaataaagtgtggcacatcc 108320
>gb|AC021506.5|AC021506 Homo sapiens chromosome 18, clone RP11-173L6, complete sequence Length = 155863 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aatagaagggttaaataaat 75 |||||||||||||||||||| Sbjct: 29590 aatagaagggttaaataaat 29571
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 187 tggttgccggtgagcacgccgatggcgcccatcttg 222 |||| ||||||||||||||||| | |||||||||| Sbjct: 20926222 tggtcgccggtgagcacgccgacgcggcccatcttg 20926257
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ataaataatactctaaaata 59 |||||||||||||||||||| Sbjct: 8679533 ataaataatactctaaaata 8679514
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ataaataatactctaaaata 59 |||||||||||||||||||| Sbjct: 3342715 ataaataatactctaaaata 3342734
>gb|AC107016.20| Homo sapiens 12 BAC RP11-153F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191947 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcc 87 |||||| ||||||||||||||||| Sbjct: 78468 ggttaagtaaattgtggcacatcc 78445
>gb|AC007037.4| Homo sapiens BAC clone RP11-119H15 from 2, complete sequence Length = 168084 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcc 87 |||||||||||||||| ||||||| Sbjct: 49969 ggttaaataaattgtgccacatcc 49946
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gccggtgagcacgccgatgg 211 |||||||||||||||||||| Sbjct: 2239243 gccggtgagcacgccgatgg 2239262
>gb|AC174929.1| Mus musculus BAC clone CH25-367I5 from chromosome 3, complete sequence Length = 90189 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||| |||||||||||| Sbjct: 10453 ggttaaataaagtgtggcacatcc 10430
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 364 tagtagctcgtgtcgaacgtctcgcagctaccggcgtccatctc 407 |||||||| ||||||||||||| | |||| || | ||||||||| Sbjct: 91014 tagtagctggtgtcgaacgtcttgtagctgcccgggtccatctc 90971
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ataaataatactctaaaata 59 |||||||||||||||||||| Sbjct: 109329 ataaataatactctaaaata 109310
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ataaataatactctaaaata 59 |||||||||||||||||||| Sbjct: 120282 ataaataatactctaaaata 120301
>dbj|AK109551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A03, full insert sequence Length = 1325 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 187 tggttgccggtgagcacgccgatggcgcccatcttg 222 |||| ||||||||||||||||| | |||||||||| Sbjct: 1088 tggtcgccggtgagcacgccgacgcggcccatcttg 1053
>emb|AJ277661.1|HSA277661 Homo sapiens partial LMO1 gene for LIM domain only 1 protein, exon 1 Length = 131145 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 agaagggttaaataaattgtggca 82 ||||||| |||||||||||||||| Sbjct: 119730 agaagggataaataaattgtggca 119707
>tpe|BN000667.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx138 gene for class III peroxidase 138 precursor, exons 1-4 Length = 9140 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 187 tggttgccggtgagcacgccgatggcgcccatcttg 222 |||| ||||||||||||||||| | |||||||||| Sbjct: 9097 tggtcgccggtgagcacgccgacgcggcccatcttg 9062
>tpe|BN000607.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx78 gene for class III peroxidase 78 precursor, exons 1-2 Length = 1093 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 364 tagtagctcgtgtcgaacgtctcgcagctaccggcgtccatctc 407 |||||||| ||||||||||||| | |||| || | ||||||||| Sbjct: 876 tagtagctggtgtcgaacgtcttgtagctgcccgggtccatctc 833
>emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-439L12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197369 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 ggttaaataaattgtggcacatcc 87 ||||||||||||| |||||||||| Sbjct: 122362 ggttaaataaattatggcacatcc 122339
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 agacgcggaagtcccggaag 249 |||||||||||||||||||| Sbjct: 204305 agacgcggaagtcccggaag 204286
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 187 tggttgccggtgagcacgccgatggcgcccatcttg 222 |||| ||||||||||||||||| | |||||||||| Sbjct: 20852436 tggtcgccggtgagcacgccgacgcggcccatcttg 20852471
>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 182172 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 187 tggttgccggtgagcacgccgatggcgcccatcttg 222 |||| ||||||||||||||||| | |||||||||| Sbjct: 11712 tggtcgccggtgagcacgccgacgcggcccatcttg 11747
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 187 tggttgccggtgagcacgccgatggcgcccatcttg 222 |||| ||||||||||||||||| | |||||||||| Sbjct: 32773 tggtcgccggtgagcacgccgacgcggcccatcttg 32738
>gb|AC139299.3| Mus musculus BAC clone RP23-335D20 from 1, complete sequence Length = 204848 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 gttaaataaattgtggcacatcct 88 |||||||||||| ||||||||||| Sbjct: 179246 gttaaataaattatggcacatcct 179269
>emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chromosome 4, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aaataaattgtggcacatcc 87 |||||||||||||||||||| Sbjct: 159490 aaataaattgtggcacatcc 159471
>gb|AC160762.4| Mus musculus BAC clone RP24-330E8 from chromosome 1, complete sequence Length = 149232 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 gttaaataaattgtggcacatcct 88 |||||||||||| ||||||||||| Sbjct: 29203 gttaaataaattatggcacatcct 29226
>emb|AL732296.11| Mouse DNA sequence from clone RP23-131P6 on chromosome 2, complete sequence Length = 203503 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tagagtacattcatttgaca 159 |||||||||||||||||||| Sbjct: 151638 tagagtacattcatttgaca 151619
>emb|AL773590.8| Mouse DNA sequence from clone RP23-181A13 on chromosome 2, complete sequence Length = 185348 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 aaataatactctaaaataga 61 |||||||||||||||||||| Sbjct: 105429 aaataatactctaaaataga 105410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,792,939 Number of Sequences: 3902068 Number of extensions: 3792939 Number of successful extensions: 79957 Number of sequences better than 10.0: 122 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 78943 Number of HSP's gapped (non-prelim): 1011 length of query: 512 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 489 effective length of database: 17,143,297,704 effective search space: 8383072577256 effective search space used: 8383072577256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
