ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154613.3| Mus musculus BAC clone RP23-338M12 from chromosom... 42 0.78
2gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, co... 40 3.1
3gb|AC162307.5| Mus musculus BAC clone RP23-271I2 from chromosome... 40 3.1
4gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, com... 40 3.1
5gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-3... 40 3.1
6dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 3.1
7dbj|AK015658.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 3.1
8gb|AC125238.5| Homo sapiens BAC clone RP11-711C24 from 2, comple... 40 3.1
9gb|AC069314.5| Homo sapiens BAC clone CTD-2300I22 from 2, comple... 40 3.1
10gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosom... 40 3.1
11gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, comple... 40 3.1
12gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 3.1

>gb|AC154613.3| Mus musculus BAC clone RP23-338M12 from chromosome 13, complete
             sequence
          Length = 200093

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    atgtgatgttttacatacagt 81
             |||||||||||||||||||||
Sbjct: 97627 atgtgatgttttacatacagt 97607



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>gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, complete sequence
          Length = 215331

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   caccaggaaaaggagtgttc 200
             ||||||||||||||||||||
Sbjct: 23990 caccaggaaaaggagtgttc 24009



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>gb|AC162307.5| Mus musculus BAC clone RP23-271I2 from chromosome 18, complete sequence
          Length = 196879

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    tgtcatctgcagcagaatct 145
              ||||||||||||||||||||
Sbjct: 113320 tgtcatctgcagcagaatct 113339



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>gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, complete sequence
          Length = 197826

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 146  actggaaattacagattttt 165
            ||||||||||||||||||||
Sbjct: 8591 actggaaattacagattttt 8610



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>gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-337K7, complete sequence
          Length = 219769

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    actggaaattacagattttt 165
              ||||||||||||||||||||
Sbjct: 152284 actggaaattacagattttt 152303



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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 12      tgccaacccgaatctggggg 31
               ||||||||||||||||||||
Sbjct: 2235377 tgccaacccgaatctggggg 2235396



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>dbj|AK015658.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930500F04 product:unclassifiable, full
           insert sequence
          Length = 577

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 actggaaattacagattttt 165
           ||||||||||||||||||||
Sbjct: 520 actggaaattacagattttt 501



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>gb|AC125238.5| Homo sapiens BAC clone RP11-711C24 from 2, complete sequence
          Length = 196622

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttccatatgtgatgttttac 74
             ||||||||||||||||||||
Sbjct: 50149 ttccatatgtgatgttttac 50168



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>gb|AC069314.5| Homo sapiens BAC clone CTD-2300I22 from 2, complete sequence
          Length = 104906

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttccatatgtgatgttttac 74
             ||||||||||||||||||||
Sbjct: 95696 ttccatatgtgatgttttac 95715



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>gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosome 13, complete
             sequence
          Length = 229410

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   caccaggaaaaggagtgttc 200
             ||||||||||||||||||||
Sbjct: 40682 caccaggaaaaggagtgttc 40663



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>gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, complete sequence
          Length = 190233

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    caccaggaaaaggagtgttc 200
              ||||||||||||||||||||
Sbjct: 132039 caccaggaaaaggagtgttc 132058



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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 12      tgccaacccgaatctggggg 31
               ||||||||||||||||||||
Sbjct: 2081653 tgccaacccgaatctggggg 2081634


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,656,443
Number of Sequences: 3902068
Number of extensions: 2656443
Number of successful extensions: 42160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42136
Number of HSP's gapped (non-prelim): 24
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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