ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart46a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6 61 1e-09
2RS6A_ARATH (O48549) 40S ribosomal protein S6-1 59 7e-09
3RS6B_ARATH (P51430) 40S ribosomal protein S6-2 59 7e-09
4RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment) 58 1e-08
5RS6_ICTPU (Q90YR8) 40S ribosomal protein S6 42 0.001
6RS6_RAT (P62755) 40S ribosomal protein S6 41 0.002
7RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33) 41 0.002
8RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33) 41 0.002
9RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6 40 0.004
10RS6_CHICK (P47838) 40S ribosomal protein S6 40 0.004
11RS6_XENLA (P39017) 40S ribosomal protein S6 38 0.010
12RS6_MANSE (Q94624) 40S ribosomal protein S6 35 0.088
13RS6_SPOFR (Q95V32) 40S ribosomal protein S6 33 0.33
14RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6 32 0.57
15RS6_APLCA (Q9BMX5) 40S ribosomal protein S6 31 1.3
16RS6_CANGA (Q6FJH3) 40S ribosomal protein S6 31 1.7
17RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6 30 2.2
18RS6_YARLI (Q6C169) 40S ribosomal protein S6 30 2.8
19RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9) 30 2.8
20RS6_KLULA (Q6CM04) 40S ribosomal protein S6 30 2.8
21COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) ... 30 3.7
22RS6_DROME (P29327) 40S ribosomal protein S6 29 4.8
23RS6_BRAFL (O01727) 40S ribosomal protein S6 29 6.3

>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6|
          Length = 251

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 34/54 (62%), Positives = 37/54 (68%)
 Frame = -3

Query: 451 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 290
           LTLQ                KSEAAEYQKLLA RLKEQRDRRSES+AK+RS+LS
Sbjct: 187 LTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRLS 240



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>RS6A_ARATH (O48549) 40S ribosomal protein S6-1|
          Length = 250

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 31/54 (57%), Positives = 36/54 (66%)
 Frame = -3

Query: 451 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 290
           LTLQ                 S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS
Sbjct: 187 LTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240



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>RS6B_ARATH (P51430) 40S ribosomal protein S6-2|
          Length = 249

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 31/54 (57%), Positives = 36/54 (66%)
 Frame = -3

Query: 451 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 290
           LTLQ                 S+AA+YQKLLA RLKEQRDRRSES+AK+RS+LS
Sbjct: 187 LTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRLS 240



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>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)|
          Length = 199

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -3

Query: 451 LTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS 290
           LTLQ                KSEAAEYQKLLA RLKEQR++RSES+AK+RS+LS
Sbjct: 137 LTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRLS 190



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>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = -3

Query: 385 EAAEYQKLLAQRLKEQRDRRSESMAKRR 302
           EAAEY KLLA+RLKE +++R E +AKRR
Sbjct: 205 EAAEYAKLLAKRLKEAKEKRQEKIAKRR 232



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>RS6_RAT (P62755) 40S ribosomal protein S6|
          Length = 249

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -3

Query: 385 EAAEYQKLLAQRLKEQRDRRSESMAKRR 302
           EAAEY KLLA+R+KE +++R E +AKRR
Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232



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>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)|
          Length = 249

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -3

Query: 385 EAAEYQKLLAQRLKEQRDRRSESMAKRR 302
           EAAEY KLLA+R+KE +++R E +AKRR
Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232



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>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)|
          Length = 249

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -3

Query: 385 EAAEYQKLLAQRLKEQRDRRSESMAKRR 302
           EAAEY KLLA+R+KE +++R E +AKRR
Sbjct: 205 EAAEYAKLLAKRMKEAKEKRQEQIAKRR 232



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>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6|
          Length = 249

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = -3

Query: 385 EAAEYQKLLAQRLKEQRDRRSESMAKRR 302
           EA+EY KLLA+R+KE +++R E +AKRR
Sbjct: 205 EASEYAKLLAKRMKEAKEKRQEQIAKRR 232



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>RS6_CHICK (P47838) 40S ribosomal protein S6|
          Length = 249

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = -3

Query: 385 EAAEYQKLLAQRLKEQRDRRSESMAKRR 302
           EAA+Y KLLA+R+KE +++R E +AKRR
Sbjct: 205 EAADYAKLLAKRMKEAKEKRQEQIAKRR 232



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>RS6_XENLA (P39017) 40S ribosomal protein S6|
          Length = 249

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = -3

Query: 385 EAAEYQKLLAQRLKEQRDRRSESMAKRR 302
           EA+EY KLLA+R KE +++R E +AKRR
Sbjct: 205 EASEYAKLLAKRSKEAKEKRQEQIAKRR 232



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>RS6_MANSE (Q94624) 40S ribosomal protein S6|
          Length = 253

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = -3

Query: 388 SEAAEYQKLLAQRLKEQRDRRSESMAKRRS 299
           S  A+Y KLLAQR KE + RR E + +RRS
Sbjct: 208 SAEADYAKLLAQRKKESKVRRQEEIKRRRS 237



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>RS6_SPOFR (Q95V32) 40S ribosomal protein S6|
          Length = 253

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -3

Query: 376 EYQKLLAQRLKEQRDRRSESMAKRRS 299
           +Y KLLAQR KE + RR E + +RRS
Sbjct: 212 DYAKLLAQRKKESKVRRQEELKRRRS 237



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>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6|
          Length = 236

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = -3

Query: 382 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 293
           AAEY +LLAQRL E++  R+E   +R S L
Sbjct: 205 AAEYAQLLAQRLHERKAERAEIKKRRASSL 234



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>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6|
          Length = 247

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 379 AEYQKLLAQRLKEQRDRRSE-SMAKRRSK 296
           AEY KLLAQR+KE ++R+ E   +  RSK
Sbjct: 208 AEYTKLLAQRMKEAKERKMERKRSNSRSK 236



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>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6|
          Length = 236

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -3

Query: 382 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 293
           AAEY +LLA+RL E++  ++E+  +R S L
Sbjct: 205 AAEYAQLLAKRLAERKAEKAETRKRRASSL 234



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>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6|
          Length = 236

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 382 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 293
           AAEY +LLA+RL E++  ++E   +R S L
Sbjct: 205 AAEYAQLLAKRLTEKKAEKAEERKRRASSL 234



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>RS6_YARLI (Q6C169) 40S ribosomal protein S6|
          Length = 242

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 382 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 293
           AAEY +LLA+R+ E++  ++E   +R S L
Sbjct: 206 AAEYAQLLAKRVAEKKSEKAEEKKRRASSL 235



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>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)|
          Length = 236

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 382 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 293
           AAEY +LLA+RL E++  ++E   +R S L
Sbjct: 205 AAEYAQLLAKRLSERKAEKAEIRKRRASSL 234



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>RS6_KLULA (Q6CM04) 40S ribosomal protein S6|
          Length = 236

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 382 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 293
           AAEY +LLA+RL E++  ++E   +R S L
Sbjct: 205 AAEYAQLLAKRLSERKAEKAEVRKRRASSL 234



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>COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 272

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 214 ATFSFLGLVIDAVLREHGYFIVGSFVTGVAFLCLYLMQFT 95
           A+       I  V+  H Y + GSF+  ++F CL L+ FT
Sbjct: 28  ASLCAFSCAIGGVMYMHAY-VNGSFILSISFFCLLLVMFT 66



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>RS6_DROME (P29327) 40S ribosomal protein S6|
          Length = 248

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 382 AAEYQKLLAQRLKEQRDRRSESMAKRRSKL 293
           +A+Y KLL QR KE + +R E+  +R + +
Sbjct: 207 SADYAKLLVQRKKESKAKREEAKRRRSASI 236



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>RS6_BRAFL (O01727) 40S ribosomal protein S6|
          Length = 244

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = -3

Query: 385 EAAEYQKLLAQRLKEQRDRRSESMAKRRS 299
           E A Y KLLA+R KE+R    E+ AKRRS
Sbjct: 206 EEATYAKLLAKRKKEER----EAHAKRRS 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,073,984
Number of Sequences: 219361
Number of extensions: 764558
Number of successful extensions: 2155
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2155
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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