Clone Name | rbart46a01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_479548.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1425 Score = 204 bits (103), Expect = 2e-49 Identities = 247/295 (83%) Strand = Plus / Minus Query: 186 tggaggaacggcgcgggcctgacatatgtgaaccccgcaaagtttccttgcccaccgccg 245 ||||||||||| || |||||||| || |||||||| || ||| | | || || ||||| Sbjct: 1220 tggaggaacggagccggcctgacgtaggtgaacccggcgaagctgctgtggccggcgccg 1161 Query: 246 gcggtgacgggggtggcggccggggagtccagcacgggcgtgttggtccagcacacgtca 305 ||| ||| |||||||| |||| ||||||||||| ||| || ||||||||||| |||| Sbjct: 1160 ccggcgacaggggtggccaccggcgagtccagcaccggcatgctggtccagcactcgtcg 1101 Query: 306 aagttggcaatgcaggtcaggccggcgacgtcaggccggaagctcggctggatctcccgg 365 |||||||| |||||||| || ||| |||| || ||||||||||||||||||| |||| Sbjct: 1100 aagttggcgatgcaggtgagcccgctcacgttgggtcggaagctcggctggatctgccgg 1041 Query: 366 gcgtccagcttcctccagttgatcggcttgaaccacttgtgcttctttatctcgtcgctg 425 || ||||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||| Sbjct: 1040 gcctccagcttcctccagttgatcggtttgagccatttgtgcctctttatctcatcgctg 981 Query: 426 ccgccgggtccggttcccagccgcttgccggcttctttgtgcagcaatcctttca 480 ||||| || ||| |||| ||||||||||| |||||||||| |||| |||||||| Sbjct: 980 ccgcccggaccgcttcctagccgcttgccaccttctttgtggagcagtcctttca 926
>dbj|AK062218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B02, full insert sequence Length = 1425 Score = 204 bits (103), Expect = 2e-49 Identities = 247/295 (83%) Strand = Plus / Minus Query: 186 tggaggaacggcgcgggcctgacatatgtgaaccccgcaaagtttccttgcccaccgccg 245 ||||||||||| || |||||||| || |||||||| || ||| | | || || ||||| Sbjct: 1220 tggaggaacggagccggcctgacgtaggtgaacccggcgaagctgctgtggccggcgccg 1161 Query: 246 gcggtgacgggggtggcggccggggagtccagcacgggcgtgttggtccagcacacgtca 305 ||| ||| |||||||| |||| ||||||||||| ||| || ||||||||||| |||| Sbjct: 1160 ccggcgacaggggtggccaccggcgagtccagcaccggcatgctggtccagcactcgtcg 1101 Query: 306 aagttggcaatgcaggtcaggccggcgacgtcaggccggaagctcggctggatctcccgg 365 |||||||| |||||||| || ||| |||| || ||||||||||||||||||| |||| Sbjct: 1100 aagttggcgatgcaggtgagcccgctcacgttgggtcggaagctcggctggatctgccgg 1041 Query: 366 gcgtccagcttcctccagttgatcggcttgaaccacttgtgcttctttatctcgtcgctg 425 || ||||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||| Sbjct: 1040 gcctccagcttcctccagttgatcggtttgagccatttgtgcctctttatctcatcgctg 981 Query: 426 ccgccgggtccggttcccagccgcttgccggcttctttgtgcagcaatcctttca 480 ||||| || ||| |||| ||||||||||| |||||||||| |||| |||||||| Sbjct: 980 ccgcccggaccgcttcctagccgcttgccaccttctttgtggagcagtcctttca 926
>dbj|AK066191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051C07, full insert sequence Length = 2598 Score = 196 bits (99), Expect = 5e-47 Identities = 246/295 (83%) Strand = Plus / Minus Query: 186 tggaggaacggcgcgggcctgacatatgtgaaccccgcaaagtttccttgcccaccgccg 245 ||||||||||| || |||||||| || |||||||| || ||| | | || || ||||| Sbjct: 2401 tggaggaacggagccggcctgacgtaggtgaacccggcgaagctgctgtggccggcgccg 2342 Query: 246 gcggtgacgggggtggcggccggggagtccagcacgggcgtgttggtccagcacacgtca 305 ||| ||| |||||||| |||| ||||||||||| ||| || ||||||||||| |||| Sbjct: 2341 ccggcgacaggggtggccaccggcgagtccagcaccggcatgctggtccagcactcgtcg 2282 Query: 306 aagttggcaatgcaggtcaggccggcgacgtcaggccggaagctcggctggatctcccgg 365 |||||||| |||||||| || ||| |||| || ||||||||||||||||||| |||| Sbjct: 2281 aagttggcgatgcaggtgagcccgctcacgttgggtcggaagctcggctggatctgccgg 2222 Query: 366 gcgtccagcttcctccagttgatcggcttgaaccacttgtgcttctttatctcgtcgctg 425 || ||||||||||||||||||||||| |||| ||| |||| | |||||||||| |||||| Sbjct: 2221 gcctccagcttcctccagttgatcggtttgagccatttgtacctctttatctcatcgctg 2162 Query: 426 ccgccgggtccggttcccagccgcttgccggcttctttgtgcagcaatcctttca 480 ||||| || ||| |||| ||||||||||| |||||||||| |||| |||||||| Sbjct: 2161 ccgcccggaccgcttcctagccgcttgccaccttctttgtggagcagtcctttca 2107
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 194 bits (98), Expect = 2e-46 Identities = 239/286 (83%) Strand = Plus / Minus Query: 186 tggaggaacggcgcgggcctgacatatgtgaaccccgcaaagtttccttgcccaccgccg 245 ||||||||||| || |||||||| || |||||||| || ||| | | || || ||||| Sbjct: 28805725 tggaggaacggagccggcctgacgtaggtgaacccggcgaagctgctgtggccggcgccg 28805666 Query: 246 gcggtgacgggggtggcggccggggagtccagcacgggcgtgttggtccagcacacgtca 305 ||| ||| |||||||| |||| ||||||||||| ||| || ||||||||||| |||| Sbjct: 28805665 ccggcgacaggggtggccaccggcgagtccagcaccggcatgctggtccagcactcgtcg 28805606 Query: 306 aagttggcaatgcaggtcaggccggcgacgtcaggccggaagctcggctggatctcccgg 365 |||||||| |||||||| || ||| |||| || ||||||||||||||||||| |||| Sbjct: 28805605 aagttggcgatgcaggtgagcccgctcacgttgggtcggaagctcggctggatctgccgg 28805546 Query: 366 gcgtccagcttcctccagttgatcggcttgaaccacttgtgcttctttatctcgtcgctg 425 || ||||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||| Sbjct: 28805545 gcctccagcttcctccagttgatcggtttgagccatttgtgcctctttatctcatcgctg 28805486 Query: 426 ccgccgggtccggttcccagccgcttgccggcttctttgtgcagca 471 ||||| || ||| |||| ||||||||||| |||||||||| |||| Sbjct: 28805485 ccgcccggaccgcttcctagccgcttgccaccttctttgtggagca 28805440
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 194 bits (98), Expect = 2e-46 Identities = 239/286 (83%) Strand = Plus / Minus Query: 186 tggaggaacggcgcgggcctgacatatgtgaaccccgcaaagtttccttgcccaccgccg 245 ||||||||||| || |||||||| || |||||||| || ||| | | || || ||||| Sbjct: 63411 tggaggaacggagccggcctgacgtaggtgaacccggcgaagctgctgtggccggcgccg 63352 Query: 246 gcggtgacgggggtggcggccggggagtccagcacgggcgtgttggtccagcacacgtca 305 ||| ||| |||||||| |||| ||||||||||| ||| || ||||||||||| |||| Sbjct: 63351 ccggcgacaggggtggccaccggcgagtccagcaccggcatgctggtccagcactcgtcg 63292 Query: 306 aagttggcaatgcaggtcaggccggcgacgtcaggccggaagctcggctggatctcccgg 365 |||||||| |||||||| || ||| |||| || ||||||||||||||||||| |||| Sbjct: 63291 aagttggcgatgcaggtgagcccgctcacgttgggtcggaagctcggctggatctgccgg 63232 Query: 366 gcgtccagcttcctccagttgatcggcttgaaccacttgtgcttctttatctcgtcgctg 425 || ||||||||||||||||||||||| |||| ||| |||||| |||||||||| |||||| Sbjct: 63231 gcctccagcttcctccagttgatcggtttgagccatttgtgcctctttatctcatcgctg 63172 Query: 426 ccgccgggtccggttcccagccgcttgccggcttctttgtgcagca 471 ||||| || ||| |||| ||||||||||| |||||||||| |||| Sbjct: 63171 ccgcccggaccgcttcctagccgcttgccaccttctttgtggagca 63126
>gb|AY103726.1| Zea mays PCO100951 mRNA sequence Length = 2440 Score = 190 bits (96), Expect = 3e-45 Identities = 165/188 (87%) Strand = Plus / Minus Query: 265 ccggggagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggtca 324 |||| ||||||||||||||||| || ||||||||| |||| |||||||| || ||||| | Sbjct: 1041 ccggagagtccagcacgggcgtcttcgtccagcactcgtcgaagttggcgatacaggtaa 982 Query: 325 ggccggcgacgtcaggccggaagctcggctggatctcccgggcgtccagcttcctccagt 384 | |||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||| Sbjct: 981 gcccggcgacgttcggccgaaagctcggctggatctgccgggcctccagcttcctccagt 922 Query: 385 tgatcggcttgaaccacttgtgcttctttatctcgtcgctgccgccgggtccggttccca 444 |||| ||||||||||||||||| || |||||||||| |||||| ||||| | | | |||| Sbjct: 921 tgattggcttgaaccacttgtggttttttatctcgttgctgcctccggggcagctgccca 862 Query: 445 gccgcttg 452 |||||||| Sbjct: 861 gccgcttg 854 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 189 aggaacggcgcgggcctgacatatgtgaaccccgcaaagtt 229 |||| ||||||||||||||| || ||||||||||| ||||| Sbjct: 1111 aggaccggcgcgggcctgacgtaggtgaaccccgcgaagtt 1071
>gb|AY389497.1| Zea mays cultivar Chalqueno ribosomal protein S6 kinase mRNA, complete cds Length = 1861 Score = 157 bits (79), Expect = 4e-35 Identities = 165/194 (85%), Gaps = 6/194 (3%) Strand = Plus / Minus Query: 265 ccggggagtccagcacgggcgtgttggtccagcacacgtca------aagttggcaatgc 318 |||| ||||||||||||||||| || ||||||||| |||| |||||||| || | Sbjct: 1514 ccggagagtccagcacgggcgtcttcgtccagcactcgtcgtcgtcgaagttggcgatac 1455 Query: 319 aggtcaggccggcgacgtcaggccggaagctcggctggatctcccgggcgtccagcttcc 378 |||| || |||||||||| ||||| |||||||||||||||| |||||| |||||||||| Sbjct: 1454 aggtaagcccggcgacgttcggccgaaagctcggctggatctgccgggcctccagcttcc 1395 Query: 379 tccagttgatcggcttgaaccacttgtgcttctttatctcgtcgctgccgccgggtccgg 438 |||||||||| ||||||||||||||||| || |||||||||| |||||| ||||| | | Sbjct: 1394 tccagttgattggcttgaaccacttgtggttttttatctcgttgctgcctccggggcagc 1335 Query: 439 ttcccagccgcttg 452 | |||||||||||| Sbjct: 1334 tgcccagccgcttg 1321 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 189 aggaacggcgcgggcctgacatatgtgaaccccgcaaagtt 229 |||| ||||||||||||||| || ||||||||||| ||||| Sbjct: 1584 aggatcggcgcgggcctgacgtaggtgaaccccgcgaagtt 1544
>gb|AY104101.1| Zea mays PCO133302 mRNA sequence Length = 646 Score = 153 bits (77), Expect = 6e-34 Identities = 173/205 (84%) Strand = Plus / Minus Query: 276 agcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggtcaggccggcgacg 335 ||||||||| |||| ||||||||| |||||||||| |||||||||||| ||| || || Sbjct: 340 agcacgggcatgttcgtccagcactcgtcaaagttcgcaatgcaggtcttgccagcaaca 281 Query: 336 tcaggccggaagctcggctggatctcccgggcgtccagcttcctccagttgatcggcttg 395 | ||||||||||| |||| ||||| |||||| |||||| || ||||||| | | |||| Sbjct: 280 ttcggccggaagcttggctcgatctgccgggcctccagcctcttccagtttacagacttg 221 Query: 396 aaccacttgtgcttctttatctcgtcgctgccgccgggtccggttcccagccgcttgccg 455 ||||||||||| ||||| || ||||| |||||||| |||||| |||||||||| |||| Sbjct: 220 aaccacttgtggttcttgatttcgtcactgccgcctggtccgcttcccagccgtctgcca 161 Query: 456 gcttctttgtgcagcaatcctttca 480 ||||||||||||| |||||||||| Sbjct: 160 gcttctttgtgcaataatcctttca 136 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Minus Query: 186 tggaggaacggcgcgggcctgacatatgtgaaccccgcaaagtt 229 ||||||||||| |||||||| ||||| |||||||| ||||||| Sbjct: 421 tggaggaacggtgcgggcctcacataactgaaccccacaaagtt 378
>dbj|AK072649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131A03, full insert sequence Length = 2244 Score = 101 bits (51), Expect = 2e-18 Identities = 174/215 (80%) Strand = Plus / Minus Query: 270 gagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggtcaggccg 329 ||||| ||||||||| || ||||||||||| ||||||||||||| |||||||| ||| Sbjct: 1755 gagtcgagcacgggcatgctggtccagcactcgtcaaagttggcgatgcaggttttgcca 1696 Query: 330 gcgacgtcaggccggaagctcggctggatctcccgggcgtccagcttcctccagttgatc 389 || || | || |||||||| ||||| |||| |||| ||| |||||| ||||||| | Sbjct: 1695 gcaacatttgggcggaagcttggctgaatctgtcgggagtctagcttcttccagtttact 1636 Query: 390 ggcttgaaccacttgtgcttctttatctcgtcgctgccgccgggtccggttcccagccgc 449 | ||||||||||||||| |||||||| || | ||| ||||| ||||| ||||||| | Sbjct: 1635 gacttgaaccacttgtgattctttatttcattgctcccgcctggtccacagcccagcctc 1576 Query: 450 ttgccggcttctttgtgcagcaatcctttcagcag 484 |||| |||||||||||||| || ||||| ||||| Sbjct: 1575 ctgccagcttctttgtgcagtaagccttttagcag 1541
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 95.6 bits (48), Expect = 1e-16 Identities = 162/200 (81%) Strand = Plus / Plus Query: 270 gagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggtcaggccg 329 ||||| ||||||||| || ||||||||||| ||||||||||||| |||||||| ||| Sbjct: 12313794 gagtcgagcacgggcatgctggtccagcactcgtcaaagttggcgatgcaggttttgcca 12313853 Query: 330 gcgacgtcaggccggaagctcggctggatctcccgggcgtccagcttcctccagttgatc 389 || || | || |||||||| ||||| |||| |||| ||| |||||| ||||||| | Sbjct: 12313854 gcaacatttgggcggaagcttggctgaatctgtcgggagtctagcttcttccagtttact 12313913 Query: 390 ggcttgaaccacttgtgcttctttatctcgtcgctgccgccgggtccggttcccagccgc 449 | ||||||||||||||| |||||||| || | ||| ||||| ||||| ||||||| | Sbjct: 12313914 gacttgaaccacttgtgattctttatttcattgctcccgcctggtccacagcccagcctc 12313973 Query: 450 ttgccggcttctttgtgcag 469 |||| |||||||||||||| Sbjct: 12313974 ctgccagcttctttgtgcag 12313993 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 270 gagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggt 322 ||||| ||||||||| || ||||||||||| ||||||| ||||| |||||||| Sbjct: 12297601 gagtcgagcacgggcatgctggtccagcactcgtcaaaattggcgatgcaggt 12297653
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 95.6 bits (48), Expect = 1e-16 Identities = 162/200 (81%) Strand = Plus / Plus Query: 270 gagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggtcaggccg 329 ||||| ||||||||| || ||||||||||| ||||||||||||| |||||||| ||| Sbjct: 12310557 gagtcgagcacgggcatgctggtccagcactcgtcaaagttggcgatgcaggttttgcca 12310616 Query: 330 gcgacgtcaggccggaagctcggctggatctcccgggcgtccagcttcctccagttgatc 389 || || | || |||||||| ||||| |||| |||| ||| |||||| ||||||| | Sbjct: 12310617 gcaacatttgggcggaagcttggctgaatctgtcgggagtctagcttcttccagtttact 12310676 Query: 390 ggcttgaaccacttgtgcttctttatctcgtcgctgccgccgggtccggttcccagccgc 449 | ||||||||||||||| |||||||| || | ||| ||||| ||||| ||||||| | Sbjct: 12310677 gacttgaaccacttgtgattctttatttcattgctcccgcctggtccacagcccagcctc 12310736 Query: 450 ttgccggcttctttgtgcag 469 |||| |||||||||||||| Sbjct: 12310737 ctgccagcttctttgtgcag 12310756 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 270 gagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggt 322 ||||| ||||||||| || ||||||||||| ||||||| ||||| |||||||| Sbjct: 12294364 gagtcgagcacgggcatgctggtccagcactcgtcaaaattggcgatgcaggt 12294416
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 95.6 bits (48), Expect = 1e-16 Identities = 162/200 (81%) Strand = Plus / Plus Query: 270 gagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggtcaggccg 329 ||||| ||||||||| || ||||||||||| ||||||||||||| |||||||| ||| Sbjct: 83327 gagtcgagcacgggcatgctggtccagcactcgtcaaagttggcgatgcaggttttgcca 83386 Query: 330 gcgacgtcaggccggaagctcggctggatctcccgggcgtccagcttcctccagttgatc 389 || || | || |||||||| ||||| |||| |||| ||| |||||| ||||||| | Sbjct: 83387 gcaacatttgggcggaagcttggctgaatctgtcgggagtctagcttcttccagtttact 83446 Query: 390 ggcttgaaccacttgtgcttctttatctcgtcgctgccgccgggtccggttcccagccgc 449 | ||||||||||||||| |||||||| || | ||| ||||| ||||| ||||||| | Sbjct: 83447 gacttgaaccacttgtgattctttatttcattgctcccgcctggtccacagcccagcctc 83506 Query: 450 ttgccggcttctttgtgcag 469 |||| |||||||||||||| Sbjct: 83507 ctgccagcttctttgtgcag 83526 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 270 gagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggt 322 ||||| ||||||||| || ||||||||||| ||||||| ||||| |||||||| Sbjct: 67134 gagtcgagcacgggcatgctggtccagcactcgtcaaaattggcgatgcaggt 67186
>emb|X79992.1|ASPK11 A.sativa Aspk11 mRNA Length = 1987 Score = 87.7 bits (44), Expect = 3e-14 Identities = 161/200 (80%) Strand = Plus / Minus Query: 270 gagtccagcacgggcgtgttggtccagcacacgtcaaagttggcaatgcaggtcaggccg 329 ||||||||||| ||| | | ||||||||| |||||||||| |||||||||||| | ||| Sbjct: 1683 gagtccagcaccggcatactcgtccagcactcgtcaaagtttgcaatgcaggtctgcccg 1624 Query: 330 gcgacgtcaggccggaagctcggctggatctcccgggcgtccagcttcctccagttgatc 389 || || | || | |||||| |||||||||| || || || || || ||||||| | Sbjct: 1623 gcaacattcgggcagaagcttggctggatctgtcgagcctcgagtctcttccagtttact 1564 Query: 390 ggcttgaaccacttgtgcttctttatctcgtcgctgccgccgggtccggttcccagccgc 449 | |||||||||||||| |||||||| || ||||||||||| | ||| ||||||| ||| Sbjct: 1563 gctttgaaccacttgtggttctttatttcatcgctgccgcccagaccgcttcccagtcgc 1504 Query: 450 ttgccggcttctttgtgcag 469 || || |||||||||||||| Sbjct: 1503 ttaccagcttctttgtgcag 1484
>emb|AJ277534.1|AOF277534 Asparagus officinalis mRNA for S6 ribosomal protein kinase (pk1 gene) Length = 1747 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 372 agcttcctccagttgatcggcttgaaccacttgtgcttctttatctcgtcgctgcc 427 |||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| Sbjct: 1277 agcttcctccagtttatcaacttgaaccacttgtgattctttatctcgttgctgcc 1222
>gb|AC163724.4| Mus musculus BAC clone RP23-464C19 from chromosome 6, complete sequence Length = 177662 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 tcaaaaggaagatgcagaggaa 53 |||||||||||||||||||||| Sbjct: 87726 tcaaaaggaagatgcagaggaa 87705
>ref|XM_968614.1| PREDICTED: Tribolium castaneum similar to CG10033-PA, isoform A (LOC662523), mRNA Length = 2535 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 395 gaaccacttgtgcttctttatctcg 419 ||||||||||||||||| ||||||| Sbjct: 2376 gaaccacttgtgcttctgtatctcg 2352
>emb|BX530078.6| Zebrafish DNA sequence from clone DKEYP-88A5 in linkage group 5, complete sequence Length = 191073 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 catagaacacagtcgttcagtgaat 98 ||||||||||||| ||||||||||| Sbjct: 175684 catagaacacagtagttcagtgaat 175708
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 ttgcccaccgccggcggtga 252 |||||||||||||||||||| Sbjct: 443304 ttgcccaccgccggcggtga 443285
>ref|XM_879672.1| PREDICTED: Bos taurus hypothetical protein LOC615338 (LOC615338), mRNA Length = 1938 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 accgccggcggtgacggggg 258 |||||||||||||||||||| Sbjct: 446 accgccggcggtgacggggg 427
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 ttgcccaccgccggcggtga 252 |||||||||||||||||||| Sbjct: 101309 ttgcccaccgccggcggtga 101290
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 ttgcccaccgccggcggtga 252 |||||||||||||||||||| Sbjct: 101233 ttgcccaccgccggcggtga 101214
>emb|CR749531.1| Homo sapiens genomic DNA; cDNA DKFZp686C24246 (from clone DKFZp686C24246) Length = 4462 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 ccggttcccagccgcttgcc 454 |||||||||||||||||||| Sbjct: 4148 ccggttcccagccgcttgcc 4167
>gb|AC099307.1| Drosophila melanogaster, chromosome 2R, region 57C-57D, BAC clone BACR13H23, complete sequence Length = 179139 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 acccgtttcgggtgcactga 140 |||||||||||||||||||| Sbjct: 65902 acccgtttcgggtgcactga 65921
>gb|AC019086.7| Homo sapiens BAC clone RP11-360H4 from 2, complete sequence Length = 199934 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aaaaggaagatgcagaggaa 53 |||||||||||||||||||| Sbjct: 17159 aaaaggaagatgcagaggaa 17140
>gb|AF525490.2| Streptomyces griseus fredericamycin biosynthetic gene cluster, complete sequence Length = 33064 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 242 gccggcggtgacgggggtggcggccggg 269 |||||||||||| |||| |||||||||| Sbjct: 14960 gccggcggtgaccggggaggcggccggg 14987
>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete sequence Length = 313634 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 acccgtttcgggtgcactga 140 |||||||||||||||||||| Sbjct: 55737 acccgtttcgggtgcactga 55756
>gb|AC129557.10| Mus musculus chromosome 19, clone RP24-245F23, complete sequence Length = 174415 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ctcaaaaggaagatgcagag 50 |||||||||||||||||||| Sbjct: 91890 ctcaaaaggaagatgcagag 91909
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 tggcggccggggagtccagc 278 |||||||||||||||||||| Sbjct: 2050317 tggcggccggggagtccagc 2050336
>gb|AC004564.1|AC004564 Drosophila melanogaster DNA sequence (P1 DS08012 (D224)), complete sequence Length = 67833 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 acccgtttcgggtgcactga 140 |||||||||||||||||||| Sbjct: 61612 acccgtttcgggtgcactga 61593 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,432,130 Number of Sequences: 3902068 Number of extensions: 3432130 Number of successful extensions: 65465 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65132 Number of HSP's gapped (non-prelim): 323 length of query: 489 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 467 effective length of database: 17,147,199,772 effective search space: 8007742293524 effective search space used: 8007742293524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)