ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45h06 |
|---|---|
| Clone Library Name | barley_pub |
>Y3136_ARATH (Q9LIG0) Clavaminate synthase-like protein At3g21360 (EC 1.-.-.-)| Length = 330 Score = 97.4 bits (241), Expect = 7e-21 Identities = 43/53 (81%), Positives = 48/53 (90%) Frame = -2 Query: 385 GSPLPADVIEACGKILEEECVAVPWQQGDVLLIDNWAVLHSRRSFEPPRRVLA 227 G PLPAD++ C +ILEEECVAVPWQ+GDVLLIDNWAVLHSRR F+PPRRVLA Sbjct: 274 GKPLPADIVHDCLRILEEECVAVPWQRGDVLLIDNWAVLHSRRPFDPPRRVLA 326
>CAS1_STRCL (Q05581) Clavaminate synthase 1 (EC 1.14.11.21) (Clavaminic acid| synthetase 1) (CAS1) (CS1) Length = 323 Score = 36.6 bits (83), Expect = 0.015 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 379 PLPADVIEACGKILEEECVAVPWQQGDVLLIDNWAVLHSRRSFEP 245 P + + A K L+E AV + GD+L++DN+ H+R F P Sbjct: 241 PADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHARTPFSP 285
>CAS2_STRCL (Q05582) Clavaminate synthase 2 (EC 1.14.11.21) (Clavaminic acid| synthetase 2) (CAS2) (CS2) Length = 324 Score = 33.1 bits (74), Expect = 0.17 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -2 Query: 379 PLPADVIEACGKILEEECVAVPWQQGDVLLIDNWAVLHSRRSFEP 245 P + + + L++ V V GDVL+IDN+ H+R F P Sbjct: 242 PADKEAVAHLSQALDDVTVGVKLVPGDVLIIDNFRTTHARTPFSP 286
>BODG_RAT (Q9QZU7) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 387 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 304 GDVLLIDNWAVLHSRRSFE 248 GDV+ DNW +LH RRS+E Sbjct: 335 GDVITFDNWRLLHGRRSYE 353
>BODG_MOUSE (Q924Y0) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 387 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 304 GDVLLIDNWAVLHSRRSFE 248 GDV+ DNW +LH RRS+E Sbjct: 335 GDVITFDNWRLLHGRRSYE 353
>BODG_HUMAN (O75936) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 387 Score = 33.1 bits (74), Expect = 0.17 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 304 GDVLLIDNWAVLHSRRSFE 248 GDV+ DNW +LH RRS+E Sbjct: 335 GDVITFDNWRLLHGRRSYE 353
>TMLH_RAT (Q91ZW6) Trimethyllysine dioxygenase, mitochondrial precursor (EC| 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 405 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 319 VPWQQGDVLLIDNWAVLHSRRSFEPPRRV 233 V + G VL IDNW VLH R SF R++ Sbjct: 356 VKLKPGKVLFIDNWRVLHGRESFTGYRQL 384
>TMLH_MOUSE (Q91ZE0) Trimethyllysine dioxygenase, mitochondrial precursor (EC| 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 421 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 319 VPWQQGDVLLIDNWAVLHSRRSFEPPRRV 233 V + G VL IDNW VLH R SF R++ Sbjct: 372 VKLKPGKVLFIDNWRVLHGRESFTGYRQL 400
>TMLH_NEUCR (Q96UB1) Trimethyllysine dioxygenase (EC 1.14.11.8)| (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 471 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 319 VPWQQGDVLLIDNWAVLHSRRSFEPPRRV 233 V + G L+ DNW VLH R +F RR+ Sbjct: 413 VQLEPGKPLIFDNWRVLHGRSAFSGIRRI 441
>TMLH_HUMAN (Q9NVH6) Trimethyllysine dioxygenase, mitochondrial precursor (EC| 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 421 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -2 Query: 319 VPWQQGDVLLIDNWAVLHSRRSFEPPRRV 233 V + G VL IDNW VLH R F R++ Sbjct: 372 VKLKPGRVLFIDNWRVLHGRECFTGYRQL 400
>CSTF1_HUMAN (Q05048) Cleavage stimulation factor, 50 kDa subunit (CSTF 50 kDa| subunit) (CF-1 50 kDa subunit) (CstF-50) Length = 431 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 18 FRCYRSANKQEQHNDSSCPAAQNYSS 95 F+C+ S N Q+QH D+ C N S+ Sbjct: 249 FQCFVSCNPQDQHTDAICSVNYNSSA 274
>CSTF1_RAT (Q5BJQ6) Cleavage stimulation factor, 50 kDa subunit (CSTF 50 kDa| subunit) (CF-1 50 kDa subunit) (CstF-50) Length = 431 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 18 FRCYRSANKQEQHNDSSCPAAQNYSS 95 F+C+ S N Q+QH D+ C N S+ Sbjct: 249 FQCFVSCNPQDQHTDAICSVNYNPSA 274
>CSTF1_MOUSE (Q99LC2) Cleavage stimulation factor, 50 kDa subunit (CSTF 50 kDa| subunit) (CF-1 50 kDa subunit) (CstF-50) Length = 431 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 18 FRCYRSANKQEQHNDSSCPAAQNYSS 95 F+C+ S N Q+QH D+ C N S+ Sbjct: 249 FQCFVSCNPQDQHTDAICSVNYNPSA 274
>VP7_BPPH6 (P11123) Protein P7| Length = 161 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Frame = +1 Query: 1 IAKLGTSDVIGLQTSKSSTMI-LPVLLHRIIPVSYVQIKSRSTW*WYTH--PTEVWINLE 171 IA L +++ L S+ ++ LPV + + SY RS W H P+E WI L Sbjct: 47 IAALNANNLAILNRHMSTLLVELPVAVMAVPGASY-----RSDWNMIAHALPSEDWITLS 101 Query: 172 QSLVSKTLMTN 204 ++ L+ N Sbjct: 102 NKMLKSGLLAN 112
>SDHD_VIBPA (Q87QA2) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 443 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -3 Query: 348 ARSWKRNVSRSHGSKVTSFSSTTGQCCTHG 259 AR WK+N RSHG V + G G Sbjct: 194 AREWKKNKLRSHGVNVVEYEQDYGVAVEQG 223
>CSTF1_PONPY (Q5R8K2) Cleavage stimulation factor, 50 kDa subunit (CSTF 50 kDa| subunit) (CF-1 50 kDa subunit) (CstF-50) Length = 431 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 18 FRCYRSANKQEQHNDSSCPAAQNYSS 95 F+C+ S N Q+QH D+ C N S+ Sbjct: 249 FQCFVSCNPQDQHADAICSVNYNSSA 274
>REG2_YEAST (P38232) Protein REG2| Length = 338 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 210 HYLQREASTRRGGSKDRRECSTAQLSMRRTSPCCHGTATHSS 335 H++QR STR + ++R CS ++L PC A+ S Sbjct: 184 HFIQRLPSTRLNSTDEQRPCSKSEL-----DPCIGNAASKRS 220
>QUEA_ACIAD (Q6FEJ3) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 344 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -1 Query: 188 LETRLCSRLIHTSVGCVYHYHVLRDLICTYDTGIIL 81 L+TR SRL+H YH H D++ + G +L Sbjct: 20 LDTRSASRLLHLDAHGHYHDHAFTDILDLINDGDLL 55
>NADO2_ORYSA (Q7G765) Probable NAD(P)H-dependent oxidoreductase 2 (EC 1.-.-.-)| Length = 322 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -2 Query: 367 DVIEACGKILEEECVAVPWQQGDVLLIDNW 278 D+ + GK L + C+ ++QGDVLL+ + Sbjct: 238 DIAQTKGKTLAQICLRWMYEQGDVLLVKTY 267
>ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3452 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 203 FVIRVLETRLCSRLIHTSVGCVYH-YHVLRDLICTYDTGIILCSRTGRIIV 54 F + + R+ LIH YH Y+V D IC T I C++TG +++ Sbjct: 1126 FTVSFSDGRVLCYLIHH-----YHPYYVPFDAICQRTTQTIECTQTGSVVL 1171
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = +3 Query: 192 SNDEHLHYLQREASTRRGGSKDRRECSTAQLSMRRTSPCCHGTATHSSSRILPHASMTSA 371 S +H E+S+ +R CS+ S +S C H + SSS +S +S+ Sbjct: 2118 SKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSS 2177
>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2| (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3305 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 Query: 295 GRHLAAMGPRHIPLPGSCRMPL*H 366 G+H+ RH+ PG+CR L H Sbjct: 2740 GQHIFTFDGRHLTFPGTCRYVLIH 2763
>Y1570_AQUAE (O67514) Hypothetical protein aq_1570| Length = 128 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/28 (32%), Positives = 19/28 (67%) Frame = +1 Query: 133 WYTHPTEVWINLEQSLVSKTLMTNIYTI 216 W+ H + + L+++ ++KT +TNIY + Sbjct: 26 WFFHLLKNEVRLKKNAITKTFLTNIYNM 53
>5HTB2_APLCA (Q16951) 5-hydroxytryptamine 2 receptor (5-HTB2) (Serotonin| receptor 2) Length = 421 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = -1 Query: 176 LCSRLIHT--SVGCVYHYHVLRDLICTYDTGIILCSRTGRIIVLLLLVCRPITSEVPS 9 LC RL HT S C + + + LI + II S G ++V L + PI S S Sbjct: 2 LCGRLRHTMNSTTCFFSHRTV--LIGIVGSLIIAVSVVGNVLVCLAIFTEPILSHSKS 57
>ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3461 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 203 FVIRVLETRLCSRLIHTSVGCVYH-YHVLRDLICTYDTGIILCSRTGRIIV 54 F + + R+ LIH YH Y+V D IC T + C++TG +++ Sbjct: 1135 FTVSFSDGRVLCYLIHH-----YHPYYVPFDAICQRTTQTVECTQTGSVVL 1180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,755,408 Number of Sequences: 219361 Number of extensions: 1175476 Number of successful extensions: 3398 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3329 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3397 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
