>COPE_ARATH (O64748) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 293

 Score =  137 bits (346), Expect = 1e-32
 Identities = 65/94 (69%), Positives = 77/94 (81%)
 Frame = -3

Query: 472 AEKYPMTGMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKPSS 293
           +EKYPMT ++LNGKAVCCM MG+F          LNKDAKDPETLANL+VC+LH+GK SS
Sbjct: 200 SEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSS 259

Query: 292 RYFSQLKLSHPDHVLVKTTTSAEDNFERALQAVA 191
           R+ SQLKLSHP+H+LVK  +SAEDNFERA+Q VA
Sbjct: 260 RHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293

>COPE_HUMAN (O14579) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
 Frame = -3

Query: 472 AEKYPMTGMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP-- 299
           A+K   T ++LNG+A C M  G +          L+KD+  PETL NLIV + HLGKP  
Sbjct: 208 ADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPE 267

Query: 298 -SSRYFSQLKLSHPDHVLVKTTTSAEDNFER 209
            ++RY SQLK +H  H  +K   + E++F+R
Sbjct: 268 VTNRYLSQLKDAHRSHPFIKEYQAKENDFDR 298

>COPE_BOVIN (Q28104) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
 Frame = -3

Query: 472 AEKYPMTGMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP-- 299
           A+K   T ++LNG+A C M  G +          L+KD+  PETL NL+V + HLGKP  
Sbjct: 208 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 267

Query: 298 -SSRYFSQLKLSHPDHVLVKTTTSAEDNFER 209
            ++RY SQLK +H  H  +K   + E++F+R
Sbjct: 268 VTNRYLSQLKDAHRSHPFIKEYRAKENDFDR 298

>COPE_CRIGR (Q60445) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP) (LDLF)
          Length = 307

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
 Frame = -3

Query: 472 AEKYPMTGMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP-- 299
           A+K   T ++LNG+A C    G +          L+KD+  PETL NLIV + HLGKP  
Sbjct: 208 ADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPE 267

Query: 298 -SSRYFSQLKLSHPDHVLVKTTTSAEDNFER-ALQ 200
            ++RY SQLK +H  H  +K   + E++F+R ALQ
Sbjct: 268 VTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQ 302

>COPE_MOUSE (O89079) Coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 307

 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
 Frame = -3

Query: 472 AEKYPMTGMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKP-- 299
           A+K   T ++LNG+A C    G +          L+KD+  PETL NLIV + HLGKP  
Sbjct: 208 ADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPE 267

Query: 298 -SSRYFSQLKLSHPDHVLVKTTTSAEDNFER 209
            ++RY SQLK +H  H  +K   + E++F+R
Sbjct: 268 VTNRYLSQLKDAHRAHPFIKEYQAKENDFDR 298

>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
 Frame = -3

Query: 451 GMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKPSSR------ 290
           G+ +     CC     F           NKDAKDP T  +L      L KP  R      
Sbjct: 599 GVAMEMAEKCCQANAQFAEISENLRARSNKDAKDPTTKNSL---ETLLYKPVDRVTRSTL 655

Query: 289 ----YFSQLKLSHPDHVLVKTTTSAEDNF 215
                      SHPDH L++       NF
Sbjct: 656 VLHDLLKHTPASHPDHPLLQDALRISQNF 684

>COPE_CAEEL (O62246) Probable coatomer subunit epsilon (Epsilon-coat protein)|
           (Epsilon-COP)
          Length = 292

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
 Frame = -3

Query: 472 AEKYPMTGMVLNGKAVCCMHMGSFXXXXXXXXXXLNKDAKDPETLANLIVCNLHLGKPSS 293
           ++KY  T  +   +AV  +    +          L +D KD + L N IV      K   
Sbjct: 195 SDKYGRTTDLEMHQAVVSILTQDYAAAEELLESALERDNKDADVLINSIVSAQLNEKDDD 254

Query: 292 ---RYFSQLKLSHPDHVLVKTTTSAEDNFER 209
              R+ SQLK  HP+H  V      E  F+R
Sbjct: 255 VVERFISQLKHEHPNHPWVIDFNEKEAEFDR 285

>SECY_PYRSA (P38397) Preprotein translocase secY subunit (Fragment)|
          Length = 412

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 105 TNTIHSVKALQNGTGEAQRANCNQARMFQATAWSALSKL 221
           T +I +++ LQ   GEA R   +Q   ++A  W+A+  L
Sbjct: 88  TTSIPNLEKLQKEEGEAGRQKISQITRYRALGWAAIQSL 126

>GH32_ARATH (Q9SZT9) Indole-3-acetic acid-amido synthetase GH3.2 (EC 6.3.2.-)|
           (Auxin-responsive GH3-like protein 2) (AtGH3-2)
           (YADOKARI 1 protein)
          Length = 549

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +3

Query: 15  FYIYIRSYSGCFEYRVG---RPVCYH--IEQYK--AKTNTIHSVKALQNGTGEAQRANCN 173
           + + I +Y+G + YRVG   R   +H    Q+K   + N + SV++ +    E Q+A  N
Sbjct: 403 YELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSVESDKTDEAELQKAVEN 462

Query: 174 QARMFQATAWSALSKLSSAD 233
            +R+F       +   S A+
Sbjct: 463 ASRLFAEQGTRGIEYTSYAE 482

>DMDA_DROME (Q9VDW6) Dystrophin, isoforms A/C/DLP1/DLP3|
          Length = 3497

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 274  KLSHPDHVLVKTTTSAED--NFERALQ 200
            KL+HP H    TTTS ED  +F RAL+
Sbjct: 3150 KLTHPMHEYCTTTTSTEDVRDFTRALK 3176

>YGY4_HALSQ (P21562) Hypothetical 80.2 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 4)
          Length = 744

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 137 KRNRGGSTR*LQSGKDVSGDSLERPFEVILRRRGGLN*HVIRVRQLQLAEVSGRRFAKVE 316
           +R   G  R   +G DV G+ + RP E++ R  G  +   +R+  +    V  RR   VE
Sbjct: 382 RRLEPGQMRAALAGVDVVGEGVNRPLELVGRLHGDFDLDALRLVVVVDDVVVERRLGLVE 441

Query: 317 I 319
           +
Sbjct: 442 V 442

>CLA4_ASHGO (Q9HFW2) Serine/threonine-protein kinase CLA4 (EC 2.7.11.1)|
          Length = 793

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 279 WLKYRDDGLPRWRLHTIRLARVSGSFASLFRASSNRVSASSKLPI 413
           W+ Y+DDGL  + L   R   ++ ++ SL++  S R  A  ++P+
Sbjct: 62  WVSYKDDGLLSF-LWQKRYMVLNDNYLSLYKGDSGREDAVVQIPL 105

>DMDB_DROME (Q9VDW3) Dystrophin, isoform B|
          Length = 1669

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 274  KLSHPDHVLVKTTTSAED--NFERALQ 200
            KL+HP H    TTTS ED  +F RAL+
Sbjct: 1322 KLTHPMHEYCTTTTSTEDVRDFTRALK 1348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,561,745
Number of Sequences: 219361
Number of extensions: 1365773
Number of successful extensions: 3221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3216
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)