ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017884.1| Zea mays clone EL01N0514G01.c mRNA sequence 143 6e-31
2gb|AY104013.1| Zea mays PCO085678 mRNA sequence 143 6e-31
3ref|NM_185032.1| Oryza sativa (japonica cultivar-group), mRNA 84 5e-13
4ref|XM_476962.1| Oryza sativa (japonica cultivar-group), mRNA 84 5e-13
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 84 5e-13
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
7gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genom... 84 5e-13
8dbj|AK062383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
10dbj|AP005173.4| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
11gb|AY575954.1| Glycine max thioredoxin mRNA, complete cds 48 0.026
12emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chr... 44 0.40
13ref|XM_747823.1| Aspergillus fumigatus Af293 MFS multidrug trans... 42 1.6
14gb|AC092836.4| Homo sapiens BAC clone RP11-50B16 from 2, complet... 42 1.6
15gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome... 40 6.2
16gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
17gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
18gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
19gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
20ref|NM_009925.2| Mus musculus procollagen, type X, alpha 1 (Col1... 40 6.2
21gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, co... 40 6.2
22emb|AL513549.13| Human DNA sequence from clone RP11-424H23 on ch... 40 6.2
23emb|Z21610.1|MMA1TXCOL M.musculus encoding alpha-1 type-x collagen 40 6.2
24emb|X67348.1|MMCOL10A Mus musculus COL10A1 gene for alpha-1 coll... 40 6.2
25emb|X65121.1|MMCOL10A1 M.musculus COL10A1 gene for alpha 1 (X) c... 40 6.2
26emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 6.2
27gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.2
28gb|DQ021448.1| Nicotiana alata thioredoxin H (Trxh) mRNA, comple... 40 6.2
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
31gb|AC004086.14| Homo sapiens 12 PAC RP3-329E11 (Roswell Park Can... 40 6.2
32gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosom... 40 6.2
33gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
34dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
35dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
36emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 6.2
37gb|AF153282.1|AF153282 Methylocystis sp. WI14 soluble methane mo... 40 6.2
38gb|AC153960.3| Mus musculus 10 BAC RP24-210O10 (Roswell Park Can... 40 6.2
39emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 6.2
40gb|U81594.1|MSU81594 Methylocystis sp. M soluble methane monooxy... 40 6.2
41gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
42emb|X88892.1|CJVPI4YEL C.jacchus intron 4 of visual pigment gene... 40 6.2
43gb|AY142333.1|AY142332S2 Callithrix geoffroyi 556nm X-linked ops... 40 6.2 
>gb|BT017884.1| Zea mays clone EL01N0514G01.c mRNA sequence
          Length = 627

 Score =  143 bits (72), Expect = 6e-31
 Identities = 156/184 (84%)
 Strand = Plus / Minus

                                                                       
Query: 278 tgatcttcctgtcaagctcatccttcttagccccgaccacgcgactcacctcctgcccgc 337
           |||||||||| |||||||| |||||||||||||| | ||| || |  ||||||| |||  
Sbjct: 361 tgatcttcctctcaagctcgtccttcttagccccaatcacacggcctacctccttcccat 302

                                                                       
Query: 338 ccttcaccagcacaaaggtcggcatcgcctctacgcggaatgtctttgcaacctccgcga 397
           |||| |||||||| || || ||||||||||||||     ||||| |||| ||||||||||
Sbjct: 301 ccttgaccagcacgaacgttggcatcgcctctaccttccatgtccttgcgacctccgcga 242

                                                                       
Query: 398 gctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttga 457
           ||||||||||||||| ||||| ||||| ||| |||| |||||||||||||| ||||||||
Sbjct: 241 gctcgtcgacgtcgaccttgatgaagatggcatcggtgaagcgggaggccagctccttga 182

               
Query: 458 aggc 461
           ||||
Sbjct: 181 aggc 178
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>gb|AY104013.1| Zea mays PCO085678 mRNA sequence
          Length = 736

 Score =  143 bits (72), Expect = 6e-31
 Identities = 156/184 (84%)
 Strand = Plus / Minus

                                                                       
Query: 278 tgatcttcctgtcaagctcatccttcttagccccgaccacgcgactcacctcctgcccgc 337
           |||||||||| |||||||| |||||||||||||| | ||| || |  ||||||| |||  
Sbjct: 425 tgatcttcctctcaagctcgtccttcttagccccaatcacacggcctacctccttcccat 366

                                                                       
Query: 338 ccttcaccagcacaaaggtcggcatcgcctctacgcggaatgtctttgcaacctccgcga 397
           |||| |||||||| || || ||||||||||||||     ||||| |||| ||||||||||
Sbjct: 365 ccttgaccagcacgaacgttggcatcgcctctaccttccatgtccttgcgacctccgcga 306

                                                                       
Query: 398 gctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttga 457
           ||||||||||||||| ||||| ||||| ||| |||| |||||||||||||| ||||||||
Sbjct: 305 gctcgtcgacgtcgaccttgatgaagatggcatcggtgaagcgggaggccagctccttga 246

               
Query: 458 aggc 461
           ||||
Sbjct: 245 aggc 242
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>ref|NM_185032.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 745

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 99/118 (83%)
 Strand = Plus / Minus

                                                                       
Query: 251 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 310
           ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 507 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 448

                                                                     
Query: 311 cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 368
           | ||||||||||| ||||||| ||||||||| |  | ||||||||||||||| |||||
Sbjct: 447 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 390



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 400 tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 459
           |||||||| |||||||||| ||||| |||||||||||||||   |||||| |||||||||
Sbjct: 358 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 299

             
Query: 460 gc 461
           ||
Sbjct: 298 gc 297
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>ref|XM_476962.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 417

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 111/134 (82%)
 Strand = Plus / Minus

                                                                       
Query: 325 acctcctgcccgcccttcaccagcacaaaggtcggcatcgcctctacgcggaatgtcttt 384
           |||||||  |||||| || ||||||| || |||||||||||||| || ||  | |||   
Sbjct: 326 acctcctcgccgcccctcgccagcacgaacgtcggcatcgcctccacccgccaggtccgc 267

                                                                       
Query: 385 gcaacctccgcgagctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggag 444
           || ||||||||||||||||||||||||| ||||| ||||  | |||||| |||||||  |
Sbjct: 266 gccacctccgcgagctcgtcgacgtcgaccttgaggaaggcgacgtcggtgaagcggccg 207

                         
Query: 445 gccatctccttgaa 458
           ||||||||||||||
Sbjct: 206 gccatctccttgaa 193
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 99/118 (83%)
 Strand = Plus / Plus

                                                                            
Query: 251      aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 310
                ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 33087731 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 33087790

                                                                          
Query: 311      cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 368
                | ||||||||||| ||||||| ||||||||| |  | ||||||||||||||| |||||
Sbjct: 33087791 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 33087848



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 400      tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 459
                |||||||| |||||||||| ||||| |||||||||||||||   |||||| |||||||||
Sbjct: 33089201 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 33089260

                  
Query: 460      gc 461
                ||
Sbjct: 33089261 gc 33089262
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 99/118 (83%)
 Strand = Plus / Plus

                                                                            
Query: 251      aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 310
                ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 33178241 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 33178300

                                                                          
Query: 311      cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 368
                | ||||||||||| ||||||| ||||||||| |  | ||||||||||||||| |||||
Sbjct: 33178301 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 33178358



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 400      tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 459
                |||||||| |||||||||| ||||| |||||||||||||||   |||||| |||||||||
Sbjct: 33179711 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 33179770

                  
Query: 460      gc 461
                ||
Sbjct: 33179771 gc 33179772
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>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete
             sequence
          Length = 139823

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 99/118 (83%)
 Strand = Plus / Minus

                                                                         
Query: 251   aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 310
             ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 35577 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 35518

                                                                       
Query: 311   cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 368
             | ||||||||||| ||||||| ||||||||| |  | ||||||||||||||| |||||
Sbjct: 35517 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 35460



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 400   tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 459
             |||||||| |||||||||| ||||| |||||||||||||||   |||||| |||||||||
Sbjct: 34107 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 34048

               
Query: 460   gc 461
             ||
Sbjct: 34047 gc 34046
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>dbj|AK062383.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B11, full
           insert sequence
          Length = 701

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 99/118 (83%)
 Strand = Plus / Minus

                                                                       
Query: 251 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 310
           ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 511 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 452

                                                                     
Query: 311 cgaccacgcgactcacctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 368
           | ||||||||||| ||||||| ||||||||| |  | ||||||||||||||| |||||
Sbjct: 451 caaccacgcgactaacctccttcccgcccttgattaacacaaaggtcggcatggcctc 394



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 400 tcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatctccttgaag 459
           |||||||| |||||||||| ||||| |||||||||||||||   |||||| |||||||||
Sbjct: 362 tcgtcgacatcgatcttgaagaagacggcgtcggcgaagcgtccggccatgtccttgaag 303

             
Query: 460 gc 461
           ||
Sbjct: 302 gc 301
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                           
Query: 392     ccgcgagctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatct 451
               ||||||||||||||||||||| ||||| ||||  | |||||| |||||||  ||||||||
Sbjct: 4913699 ccgcgagctcgtcgacgtcgaccttgaggaaggcgacgtcggtgaagcggccggccatct 4913758

                      
Query: 452     ccttgaa 458
               |||||||
Sbjct: 4913759 ccttgaa 4913765



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 325     acctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 368
               |||||||  |||||| || ||||||| || ||||||||||||||
Sbjct: 4913076 acctcctcgccgcccctcgccagcacgaacgtcggcatcgcctc 4913119
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>dbj|AP005173.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0003E08
          Length = 161095

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                         
Query: 392   ccgcgagctcgtcgacgtcgatcttgacgaagagggcgtcggcgaagcgggaggccatct 451
             ||||||||||||||||||||| ||||| ||||  | |||||| |||||||  ||||||||
Sbjct: 99183 ccgcgagctcgtcgacgtcgaccttgaggaaggcgacgtcggtgaagcggccggccatct 99242

                    
Query: 452   ccttgaa 458
             |||||||
Sbjct: 99243 ccttgaa 99249



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 325   acctcctgcccgcccttcaccagcacaaaggtcggcatcgcctc 368
             |||||||  |||||| || ||||||| || ||||||||||||||
Sbjct: 98560 acctcctcgccgcccctcgccagcacgaacgtcggcatcgcctc 98603
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>gb|AY575954.1| Glycine max thioredoxin mRNA, complete cds
          Length = 408

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 400 tcgtcgacgtcgatcttgacgaag 423
           ||||||||||||||||||||||||
Sbjct: 263 tcgtcgacgtcgatcttgacgaag 240
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>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the
             gene for a novel protein (3732413I11Rik), a novel gene
             (4930597A21Rik), the 5' end of the Ebf1 gene for early
             B-cell factor 1, a novel gene and a CpG island, complete
             sequence
          Length = 215524

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 127   ggattttgcagcattttagaag 148
             ||||||||||||||||||||||
Sbjct: 99922 ggattttgcagcattttagaag 99901
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>ref|XM_747823.1| Aspergillus fumigatus Af293 MFS multidrug transporter (Afu1g15490)
           partial mRNA
          Length = 1809

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 43  caaggtgacagatgacgatca 63
           |||||||||||||||||||||
Sbjct: 168 caaggtgacagatgacgatca 188
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>gb|AC092836.4| Homo sapiens BAC clone RP11-50B16 from 2, complete sequence
          Length = 165768

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 175    accataggagcctcttgccactggg 199
              |||||||| ||||||||||||||||
Sbjct: 127895 accataggtgcctcttgccactggg 127919
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>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence
          Length = 200560

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    ccagagttacacatttacacgatc 93
             ||||||| ||||||||||||||||
Sbjct: 82506 ccagagtcacacatttacacgatc 82483
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>gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0023H09,
             complete sequence
          Length = 178320

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 404   cgacgtcgatcttgacgaagaggg 427
             |||| |||||||||||||||||||
Sbjct: 60694 cgacatcgatcttgacgaagaggg 60717
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>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12,
             complete sequence
          Length = 187972

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 404   cgacgtcgatcttgacgaagaggg 427
             |||| |||||||||||||||||||
Sbjct: 16241 cgacatcgatcttgacgaagaggg 16218
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>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0008H02, complete sequence
          Length = 143438

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 423  gagggcgtcggcgaagcgggaggc 446
            |||||||||||||||| |||||||
Sbjct: 7522 gagggcgtcggcgaagtgggaggc 7545
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>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0028G07, complete sequence
          Length = 157463

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 423   gagggcgtcggcgaagcgggaggc 446
             |||||||||||||||| |||||||
Sbjct: 93839 gagggcgtcggcgaagtgggaggc 93862
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>ref|NM_009925.2| Mus musculus procollagen, type X, alpha 1 (Col10a1), mRNA
          Length = 4964

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  cttcctgtcaagctcatcct 301
            ||||||||||||||||||||
Sbjct: 2741 cttcctgtcaagctcatcct 2760
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>gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, complete sequence
          Length = 319367

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   cttcctgtcaagctcatcct 301
             ||||||||||||||||||||
Sbjct: 69717 cttcctgtcaagctcatcct 69698
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>emb|AL513549.13| Human DNA sequence from clone RP11-424H23 on chromosome 6 Contains part
             of a novel gene (FLJ20342), complete sequence
          Length = 131374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    atcacagtaacttgattgcc 42
             ||||||||||||||||||||
Sbjct: 22916 atcacagtaacttgattgcc 22935
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>emb|Z21610.1|MMA1TXCOL M.musculus encoding alpha-1 type-x collagen
          Length = 3422

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  cttcctgtcaagctcatcct 301
            ||||||||||||||||||||
Sbjct: 2342 cttcctgtcaagctcatcct 2361
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>emb|X67348.1|MMCOL10A Mus musculus COL10A1 gene for alpha-1 collagen type X
          Length = 9331

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  cttcctgtcaagctcatcct 301
            ||||||||||||||||||||
Sbjct: 7108 cttcctgtcaagctcatcct 7127
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>emb|X65121.1|MMCOL10A1 M.musculus COL10A1 gene for alpha 1 (X) collagen
          Length = 2215

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  cttcctgtcaagctcatcct 301
            ||||||||||||||||||||
Sbjct: 1938 cttcctgtcaagctcatcct 1957
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    cgaagagggcgtcggcgaag 438
              ||||||||||||||||||||
Sbjct: 177544 cgaagagggcgtcggcgaag 177525
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     tgcccgcccttcaccagcac 350
               ||||||||||||||||||||
Sbjct: 4313213 tgcccgcccttcaccagcac 4313194
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>gb|DQ021448.1| Nicotiana alata thioredoxin H (Trxh) mRNA, complete cds
          Length = 699

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 396 gagctcgtcgacgtcgatcttgacgaag 423
           |||||| ||||||||||| |||||||||
Sbjct: 412 gagctcatcgacgtcgattttgacgaag 385
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 423      gagggcgtcggcgaagcgggaggc 446
                |||||||||||||||| |||||||
Sbjct: 17499825 gagggcgtcggcgaagtgggaggc 17499848
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 404      cgacgtcgatcttgacgaagaggg 427
                |||| |||||||||||||||||||
Sbjct: 12679062 cgacatcgatcttgacgaagaggg 12679039
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>gb|AC004086.14| Homo sapiens 12 PAC RP3-329E11 (Roswell Park Cancer Institute Human
            Bac Library) complete sequence
          Length = 94508

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  ggattttgcagcattttaga 146
            ||||||||||||||||||||
Sbjct: 6430 ggattttgcagcattttaga 6411
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>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete
            sequence
          Length = 206798

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 70   ccagagttacacatttacacgatc 93
            ||||||| ||||||||||||||||
Sbjct: 9002 ccagagtcacacatttacacgatc 9025
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   tgcccgcccttcaccagcac 350
             ||||||||||||||||||||
Sbjct: 91802 tgcccgcccttcaccagcac 91783
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>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0058D03
          Length = 184235

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 404   cgacgtcgatcttgacgaagaggg 427
             |||| |||||||||||||||||||
Sbjct: 23057 cgacatcgatcttgacgaagaggg 23034
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>dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0051M20
          Length = 152702

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 404   cgacgtcgatcttgacgaagaggg 427
             |||| |||||||||||||||||||
Sbjct: 65031 cgacatcgatcttgacgaagaggg 65008
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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 399     ctcgtcgacgtcgatcttgacgaa 422
               |||||||||||||||||| |||||
Sbjct: 1239124 ctcgtcgacgtcgatcttcacgaa 1239147
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>gb|AF153282.1|AF153282 Methylocystis sp. WI14 soluble methane monooxygenase gene cluster,
            partial sequence
          Length = 5253

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  ctcgtcgacgtcgatcttga 418
            ||||||||||||||||||||
Sbjct: 2840 ctcgtcgacgtcgatcttga 2821
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>gb|AC153960.3| Mus musculus 10 BAC RP24-210O10 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162022

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    cttcctgtcaagctcatcct 301
              ||||||||||||||||||||
Sbjct: 121212 cttcctgtcaagctcatcct 121193
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 388     acctccgcgagctcgtcgac 407
               ||||||||||||||||||||
Sbjct: 1333317 acctccgcgagctcgtcgac 1333336
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>gb|U81594.1|MSU81594 Methylocystis sp. M soluble methane monooxygenase gene cluster mmoX,
            mmoY, mmoB, mmoZ and mmoC genes, complete cds
          Length = 5873

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  ctcgtcgacgtcgatcttga 418
            ||||||||||||||||||||
Sbjct: 3404 ctcgtcgacgtcgatcttga 3385
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 423      gagggcgtcggcgaagcgggaggc 446
                |||||||||||||||| |||||||
Sbjct: 17593535 gagggcgtcggcgaagtgggaggc 17593558
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>emb|X88892.1|CJVPI4YEL C.jacchus intron 4 of visual pigment gene (yellow allele)
          Length = 1821

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 ggagcctcttgccactggga 200
           ||||||||||||||||||||
Sbjct: 854 ggagcctcttgccactggga 873
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>gb|AY142333.1|AY142332S2 Callithrix geoffroyi 556nm X-linked opsin gene, exon 4
          Length = 1322

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  ggagcctcttgccactggga 200
            ||||||||||||||||||||
Sbjct: 1020 ggagcctcttgccactggga 1039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,434,265
Number of Sequences: 3902068
Number of extensions: 3434265
Number of successful extensions: 61242
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60876
Number of HSP's gapped (non-prelim): 364
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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