ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45g03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483676.1| Oryza sativa (japonica cultivar-group), mRNA Length = 783 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 235 cggcacagcgggcacgacgcatgccggcacagccacccgtctatgcacgacaggtggaac 294 |||||||| ||||||||||| |||| | |||||| | ||| ||||| ||||||||| Sbjct: 731 cggcacagggggcacgacgcgtgcctgagcagccagctgtcgatgcagcggaggtggaac 672 Query: 295 gtgtggcggcactccggcaggctccgcgccgcctcgccggcctcgaactcctggaggcac 354 ||||||| |||||||||||| ||||||||| ||||||| |||| || |||||||||||| Sbjct: 671 gtgtggccgcactccggcagcctccgcgcccgctcgccgtcctccaagtcctggaggcac 612 Query: 355 acggagcagccg 366 |||||||||||| Sbjct: 611 acggagcagccg 600
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 235 cggcacagcgggcacgacgcatgccggcacagccacccgtctatgcacgacaggtggaac 294 |||||||| ||||||||||| |||| | |||||| | ||| ||||| ||||||||| Sbjct: 27595421 cggcacagggggcacgacgcgtgcctgagcagccagctgtcgatgcagcggaggtggaac 27595480 Query: 295 gtgtggcggcactccggcaggctccgcgccgcctcgccggcctcgaactcctggaggcac 354 ||||||| |||||||||||| ||||||||| ||||||| |||| || |||||||||||| Sbjct: 27595481 gtgtggccgcactccggcagcctccgcgcccgctcgccgtcctccaagtcctggaggcac 27595540 Query: 355 acggagcagccg 366 |||||||||||| Sbjct: 27595541 acggagcagccg 27595552 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tccgcgccgcctcgccggcctc 338 |||||||||||||||||||||| Sbjct: 22965264 tccgcgccgcctcgccggcctc 22965243
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 235 cggcacagcgggcacgacgcatgccggcacagccacccgtctatgcacgacaggtggaac 294 |||||||| ||||||||||| |||| | |||||| | ||| ||||| ||||||||| Sbjct: 77711 cggcacagggggcacgacgcgtgcctgagcagccagctgtcgatgcagcggaggtggaac 77770 Query: 295 gtgtggcggcactccggcaggctccgcgccgcctcgccggcctcgaactcctggaggcac 354 ||||||| |||||||||||| ||||||||| ||||||| |||| || |||||||||||| Sbjct: 77771 gtgtggccgcactccggcagcctccgcgcccgctcgccgtcctccaagtcctggaggcac 77830 Query: 355 acggagcagccg 366 |||||||||||| Sbjct: 77831 acggagcagccg 77842
>dbj|AK105338.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F06, full insert sequence Length = 1246 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 235 cggcacagcgggcacgacgcatgccggcacagccacccgtctatgcacgacaggtggaac 294 |||||||| ||||||||||| |||| | |||||| | ||| ||||| ||||||||| Sbjct: 884 cggcacagggggcacgacgcgtgcctgagcagccagctgtcgatgcagcggaggtggaac 825 Query: 295 gtgtggcggcactccggcaggctccgcgccgcctcgccggcctcgaactcctggaggcac 354 ||||||| |||||||||||| ||||||||| ||||||| |||| || |||||||||||| Sbjct: 824 gtgtggccgcactccggcagcctccgcgcccgctcgccgtcctccaagtcctggaggcac 765 Query: 355 acggagcagccg 366 |||||||||||| Sbjct: 764 acggagcagccg 753
>gb|BT018051.1| Zea mays clone EL01N0531F06.c mRNA sequence Length = 755 Score = 107 bits (54), Expect = 3e-20 Identities = 114/134 (85%) Strand = Plus / Minus Query: 220 gcctagacggcgcggcggcacagcgggcacgacgcatgccggcacagccacccgtctatg 279 |||||||| ||||||||||||| ||||| || || |||||| |||||| ||||| ||| Sbjct: 540 gcctagacagcgcggcggcacaaggggcaggaggcgtgccggagcagccagccgtcgatg 481 Query: 280 cacgacaggtggaacgtgtggcggcactccggcaggctccgcgccgcctcgccggcctcg 339 |||| |||||||||||||||||||||| |||||||||||| ||| |||||||| | | Sbjct: 480 cacggcaggtggaacgtgtggcggcacaccggcaggctcctcgcgctgtcgccggcttgg 421 Query: 340 aactcctggaggca 353 || ||||||||||| Sbjct: 420 aattcctggaggca 407
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 329 cgccggcctcgaactcctggaggca 353 ||||||||||||||||||||||||| Sbjct: 19134 cgccggcctcgaactcctggaggca 19158
>ref|XM_517617.1| PREDICTED: Pan troglodytes similar to NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase); NADH dehydrogenase (ubiquinone) Fe-S protein 6 (13kD) (NADH-coenzyme Q reductase) (LOC461705), mRNA Length = 789 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Minus Query: 310 ggcaggctccgcgccgcctcgccg 333 |||||||||||||||||||||||| Sbjct: 239 ggcaggctccgcgccgcctcgccg 216
>ref|NM_004553.3| Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) (NDUFS6), mRNA Length = 541 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 310 ggcaggctccgcgccgcctcgcc 332 ||||||||||||||||||||||| Sbjct: 88 ggcaggctccgcgccgcctcgcc 66
>gb|BC046155.2| Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase), mRNA (cDNA clone MGC:57685 IMAGE:6047460), complete cds Length = 548 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 310 ggcaggctccgcgccgcctcgcc 332 ||||||||||||||||||||||| Sbjct: 70 ggcaggctccgcgccgcctcgcc 48
>gb|BC038664.1| Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase), mRNA (cDNA clone MGC:40334 IMAGE:5204222), complete cds Length = 589 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 310 ggcaggctccgcgccgcctcgcc 332 ||||||||||||||||||||||| Sbjct: 80 ggcaggctccgcgccgcctcgcc 58
>dbj|AK022503.1| Homo sapiens cDNA FLJ12441 fis, clone NT2RM1000132, highly similar to Homo sapiens NADH:ubiquinone oxidoreductase NDUFS6 subunit mRNA, nuclear gene encoding mitochondrial protein Length = 525 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 310 ggcaggctccgcgccgcctcgcc 332 ||||||||||||||||||||||| Sbjct: 84 ggcaggctccgcgccgcctcgcc 62
>emb|CR456880.1| Homo sapiens full open reading frame cDNA clone RZPDo834B017D for gene NDUFS6, NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase); complete cds, incl. stopcodon Length = 375 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 310 ggcaggctccgcgccgcctcgcc 332 ||||||||||||||||||||||| Sbjct: 65 ggcaggctccgcgccgcctcgcc 43
>gb|AC026443.4| Homo sapiens chromosome 5 clone CTD-2296H22, complete sequence Length = 118562 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 310 ggcaggctccgcgccgcctcgcc 332 ||||||||||||||||||||||| Sbjct: 70343 ggcaggctccgcgccgcctcgcc 70321
>gb|AF044959.1|AF044959 Homo sapiens NADH:ubiquinone oxidoreductase NDUFS6 subunit mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 547 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 310 ggcaggctccgcgccgcctcgcc 332 ||||||||||||||||||||||| Sbjct: 75 ggcaggctccgcgccgcctcgcc 53
>ref|XM_482852.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2096 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tccgcgccgcctcgccggcctc 338 |||||||||||||||||||||| Sbjct: 555 tccgcgccgcctcgccggcctc 534
>ref|XM_507264.1| PREDICTED Oryza sativa (japonica cultivar-group), P0104B02.35 mRNA Length = 2284 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tccgcgccgcctcgccggcctc 338 |||||||||||||||||||||| Sbjct: 743 tccgcgccgcctcgccggcctc 722
>ref|NM_197606.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0001O14.25), mRNA Length = 702 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 tcctggaggcacacggagcagc 364 |||||||||||||||||||||| Sbjct: 581 tcctggaggcacacggagcagc 560
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 363 gccgccgttctgcacggcggcctgct 388 ||||||||||||||||||||| |||| Sbjct: 2210703 gccgccgttctgcacggcggcttgct 2210728
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tccgcgccgcctcgccggcctc 338 |||||||||||||||||||||| Sbjct: 139102 tccgcgccgcctcgccggcctc 139081
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tccgcgccgcctcgccggcctc 338 |||||||||||||||||||||| Sbjct: 24992 tccgcgccgcctcgccggcctc 24971
>dbj|AK119595.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D09, full insert sequence Length = 2284 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tccgcgccgcctcgccggcctc 338 |||||||||||||||||||||| Sbjct: 743 tccgcgccgcctcgccggcctc 722
>dbj|AK119332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B11, full insert sequence Length = 2956 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 tcctggaggcacacggagcagc 364 |||||||||||||||||||||| Sbjct: 617 tcctggaggcacacggagcagc 596
>dbj|AK106796.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B04, full insert sequence Length = 2096 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tccgcgccgcctcgccggcctc 338 |||||||||||||||||||||| Sbjct: 555 tccgcgccgcctcgccggcctc 534
>dbj|AK105882.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D04, full insert sequence Length = 1236 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 tcctggaggcacacggagcagc 364 |||||||||||||||||||||| Sbjct: 679 tcctggaggcacacggagcagc 658
>dbj|AK099554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033K23, full insert sequence Length = 1159 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 tcctggaggcacacggagcagc 364 |||||||||||||||||||||| Sbjct: 675 tcctggaggcacacggagcagc 654
>dbj|AK061763.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B04, full insert sequence Length = 1236 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 tcctggaggcacacggagcagc 364 |||||||||||||||||||||| Sbjct: 679 tcctggaggcacacggagcagc 658
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 cctggaggcacacggagcagc 364 ||||||||||||||||||||| Sbjct: 17402 cctggaggcacacggagcagc 17382
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 cctggaggcacacggagcagc 364 ||||||||||||||||||||| Sbjct: 20755003 cctggaggcacacggagcagc 20754983
>gb|AC164651.3| Ornithorhynchus anatinus BAC clone OABb-375A1 from chromosome unknown, complete sequence Length = 183178 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 ccgcgccgcctcgccggcctc 338 ||||||||||||||||||||| Sbjct: 14125 ccgcgccgcctcgccggcctc 14145
>gb|AF038423.1|AF038423 Mycobacterium smegmatis NADH dehydrogenase (ndh) gene, complete cds Length = 1376 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 381 ggcctgctgctcggtgatggt 401 ||||||||||||||||||||| Sbjct: 1299 ggcctgctgctcggtgatggt 1279
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 cctggaggcacacggagcagc 364 ||||||||||||||||||||| Sbjct: 20766267 cctggaggcacacggagcagc 20766247
>ref|XM_469016.1| Oryza sativa (japonica cultivar-group), mRNA Length = 663 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 gacggcgcggcggcacagcg 244 |||||||||||||||||||| Sbjct: 402 gacggcgcggcggcacagcg 383
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 tctgcacggcggcctgctgc 390 |||||||||||||||||||| Sbjct: 1451507 tctgcacggcggcctgctgc 1451526
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gacggcgcggcggcacagcg 244 |||||||||||||||||||| Sbjct: 57883 gacggcgcggcggcacagcg 57902
>gb|AC107688.13| Mus musculus chromosome 7, clone RP24-170K5, complete sequence Length = 173086 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 agccatgcctttgaaggagg 451 |||||||||||||||||||| Sbjct: 147115 agccatgcctttgaaggagg 147096
>gb|AC007808.5| Drosophila melanogaster clone BACR18C01, complete sequence Length = 167195 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ctcgccggcctcgaactcct 346 |||||||||||||||||||| Sbjct: 120408 ctcgccggcctcgaactcct 120427
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gacggcgcggcggcacagcg 244 |||||||||||||||||||| Sbjct: 24941480 gacggcgcggcggcacagcg 24941499
>gb|BT011377.1| Drosophila melanogaster LP10202 full insert cDNA Length = 3876 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ctcgccggcctcgaactcct 346 |||||||||||||||||||| Sbjct: 3540 ctcgccggcctcgaactcct 3559
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gccgttctgcacggcggcct 385 |||||||||||||||||||| Sbjct: 2643482 gccgttctgcacggcggcct 2643501
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 acgacgcatgccggcacagc 267 |||||||||||||||||||| Sbjct: 2598936 acgacgcatgccggcacagc 2598955
>gb|AC129351.6| Homo sapiens 12 BAC RP11-466G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161618 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gctaactacaagagattaac 96 |||||||||||||||||||| Sbjct: 42062 gctaactacaagagattaac 42043
>gb|AE005997.1| Caulobacter crescentus CB15 section 323 of 359 of the complete genome Length = 11386 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cggcggcctgctgctcggtg 396 |||||||||||||||||||| Sbjct: 6606 cggcggcctgctgctcggtg 6587
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cggcggcctgctgctcggtg 396 |||||||||||||||||||| Sbjct: 453642 cggcggcctgctgctcggtg 453623
>ref|NM_206488.1| Drosophila melanogaster CG3563-RB, transcript variant B (CG3563), mRNA Length = 3258 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ctcgccggcctcgaactcct 346 |||||||||||||||||||| Sbjct: 2922 ctcgccggcctcgaactcct 2941
>ref|NM_142132.2| Drosophila melanogaster CG3563-RA, transcript variant A (CG3563), mRNA Length = 4191 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ctcgccggcctcgaactcct 346 |||||||||||||||||||| Sbjct: 3855 ctcgccggcctcgaactcct 3874
>ref|NM_134927.1| Drosophila melanogaster CG15412-RA (CG15412), mRNA Length = 1452 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 tcctaaggagccggacacgccaag 220 ||||| |||||||||||||||||| Sbjct: 1072 tcctacggagccggacacgccaag 1095
>gb|AC158216.7| Mus musculus chromosome 7, clone RP24-167K8, complete sequence Length = 189027 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 agccatgcctttgaaggagg 451 |||||||||||||||||||| Sbjct: 163823 agccatgcctttgaaggagg 163842
>gb|AY051933.1| Drosophila melanogaster LD41490 full length cDNA Length = 2444 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ctcgccggcctcgaactcct 346 |||||||||||||||||||| Sbjct: 2107 ctcgccggcctcgaactcct 2126
>gb|AF094582.1|AF094582 Spodoptera litura apolipophorin-III precursor (apoLp-III) mRNA, complete cds Length = 704 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 369 gttctgcacggcggcctgctgctcggtg 396 ||||||||||||||||||| ||| |||| Sbjct: 465 gttctgcacggcggcctgcagcttggtg 438
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcgcggcggcacagcgggca 248 |||||||||||||||||||| Sbjct: 320034 gcgcggcggcacagcgggca 320053 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 gcgccgcctcgccggcctcg 339 |||||||||||||||||||| Sbjct: 71590 gcgccgcctcgccggcctcg 71609
>gb|BT022696.1| Drosophila melanogaster IP12313 full insert cDNA Length = 1875 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 tcctaaggagccggacacgccaag 220 ||||| |||||||||||||||||| Sbjct: 1375 tcctacggagccggacacgccaag 1398
>gb|BT022656.1| Drosophila melanogaster IP12213 full insert cDNA Length = 1867 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 tcctaaggagccggacacgccaag 220 ||||| |||||||||||||||||| Sbjct: 1365 tcctacggagccggacacgccaag 1388
>gb|BT022636.1| Drosophila melanogaster IP12013 full insert cDNA Length = 1869 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 tcctaaggagccggacacgccaag 220 ||||| |||||||||||||||||| Sbjct: 1364 tcctacggagccggacacgccaag 1387
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 gacggcgcggcggcacagcg 244 |||||||||||||||||||| Sbjct: 25032755 gacggcgcggcggcacagcg 25032774
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 cgcgccgcctcgccggcctc 338 |||||||||||||||||||| Sbjct: 20215839 cgcgccgcctcgccggcctc 20215820
>gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone BACR26A07, complete sequence Length = 172436 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 tcctaaggagccggacacgccaag 220 ||||| |||||||||||||||||| Sbjct: 31629 tcctacggagccggacacgccaag 31606
>gb|AC009750.7|AC009750 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone BACR15P13, complete sequence Length = 187049 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 tcctaaggagccggacacgccaag 220 ||||| |||||||||||||||||| Sbjct: 116966 tcctacggagccggacacgccaag 116943
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 318 ccgcgccgcctcgccggcctcgaactcc 345 |||||||| |||| |||||||||||||| Sbjct: 8597418 ccgcgccgtctcgtcggcctcgaactcc 8597445 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cggcggcctgctgctcggtg 396 |||||||||||||||||||| Sbjct: 1374184 cggcggcctgctgctcggtg 1374165
>dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0472F10 Length = 136076 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 cgcgccgcctcgccggcctc 338 |||||||||||||||||||| Sbjct: 89145 cgcgccgcctcgccggcctc 89126
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 cggcggcctgctgctcggtg 396 |||||||||||||||||||| Sbjct: 332278 cggcggcctgctgctcggtg 332297
>emb|BX927243.9| Zebrafish DNA sequence from clone DKEY-21E2 in linkage group 22, complete sequence Length = 227003 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 ggcatacatatcatgtaatg 58 |||||||||||||||||||| Sbjct: 128609 ggcatacatatcatgtaatg 128590
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 gcaggctccgcgccgcctcg 330 |||||||||||||||||||| Sbjct: 30686 gcaggctccgcgccgcctcg 30705
>gb|AE003706.5| Drosophila melanogaster chromosome 3R, section 44 of 118 of the complete sequence Length = 270961 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 ctcgccggcctcgaactcct 346 |||||||||||||||||||| Sbjct: 93709 ctcgccggcctcgaactcct 93728
>gb|AE003580.3| Drosophila melanogaster chromosome 2L, section 11 of 83 of the complete sequence Length = 286920 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 tcctaaggagccggacacgccaag 220 ||||| |||||||||||||||||| Sbjct: 229628 tcctacggagccggacacgccaag 229605
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 gcctgctgctcggtgatggt 401 |||||||||||||||||||| Sbjct: 1714987 gcctgctgctcggtgatggt 1715006
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ccggcaggctccgcgccgcc 327 |||||||||||||||||||| Sbjct: 35658 ccggcaggctccgcgccgcc 35639
>gb|M97560.1|HUM21SEQE Human (clone LA171) chromosome 21 sequence Length = 796 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gctccgcgccgcctcgccggcctc 338 ||||||||||||||| |||||||| Sbjct: 355 gctccgcgccgcctccccggcctc 332 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,147,801 Number of Sequences: 3902068 Number of extensions: 3147801 Number of successful extensions: 70853 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69786 Number of HSP's gapped (non-prelim): 1062 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
